Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338191.1

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 708

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338191.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 382 bp

atgaagtatgaacccggccgattgatccctcagaggttctctccttacctagtcagaactgtcctgaaaaccatcaaagatctgagtcacaaccaactcggtgactctgtcctggcagacctcttttaccacccatctctccagcagctcactctctccttcaaccaattcacctctatccaaatactaaaatcaatactgaggttacctagagatggaaacggcggcgacaaggtgaggctgagtgacaccgacgacgccgaacttggtgtagcctcgtctgtaaaggatttgagagaagaacagattattaacagaagaagtgaagaactaaagagtggaggagagactcagaagagatcaagagagttgggaacaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

9.3

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	113, 163, 247
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	80, 142, 209
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	2 cut(s)	50, 210
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	146, 226
BlsI	GCNGC	2 cut(s)	147, 227
Bme1390I	CCNGG	2 cut(s)	15, 113
BmrFI	CCNGG	2 cut(s)	15, 113
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	5 cut(s)	44, 74, 191, 233, 365
BseRI	GAGGAG	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	24, 79, 359
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	5 cut(s)	43, 75, 192, 234, 364
BspPI	GGATC	1 cut(s)	19
BssMI	GATC	3 cut(s)	24, 79, 359
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	30, 83, 200, 242, 351
BstEII	GGTNACC	1 cut(s)	204
BstKTI	GATC	3 cut(s)	27, 82, 362
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	24, 79, 359
BstMCI	CGRYCG	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	13, 111
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	266
CviJI	RGCY	4 cut(s)	18, 148, 241, 275
CviKI_1	RGCY	4 cut(s)	18, 148, 241, 275
DdeI	CTNAG	5 cut(s)	30, 83, 200, 242, 351
DpnI	GATC	3 cut(s)	26, 81, 361
DpnII	GATC	3 cut(s)	24, 79, 359
EaeI	YGGCCR	1 cut(s)	16
EagI	CGGCCG	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
EclXI	CGGCCG	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	111
FaiI	YATR	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	146, 226
Fsp4HI	GCNGC	2 cut(s)	146, 226
FspBI	CTAG	2 cut(s)	50, 210
GluI	GCNGC	2 cut(s)	146, 226
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	85, 104, 349
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	113, 163, 247
Hpy188I	TCNGA	4 cut(s)	33, 56, 84, 354
Hpy188III	TCNNGA	2 cut(s)	64, 363
Hpy99I	CGWCG	2 cut(s)	257, 260
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	61
HpyF3I	CTNAG	5 cut(s)	30, 83, 200, 242, 351
Hsp92I	GRCGYC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	24, 79, 359
LpnPI	CCDG	5 cut(s)	28, 77, 98, 125, 155
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	50, 210
MaeIII	GTNAC	4 cut(s)	86, 101, 204, 245
MalI	GATC	3 cut(s)	26, 81, 361
MboI	GATC	3 cut(s)	24, 79, 359
MboII	GAAGA	4 cut(s)	311, 330, 338, 367
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	3 cut(s)	94, 98, 343
MnlI	CCTC	8 cut(s)	27, 39, 131, 184, 195, 231, 286, 335
MseI	TTAA	1 cut(s)	312
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	15, 113
MvaI	CCWGG	1 cut(s)	113
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	24, 79, 359
NmuCI	GTSAC	3 cut(s)	86, 101, 245
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	147, 227
PleI	GAGTC	3 cut(s)	93, 98, 343
PpsI	GAGTC	3 cut(s)	93, 98, 343
Psp6I	CCWGG	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	146, 226
Sau3AI	GATC	3 cut(s)	24, 79, 359
SchI	GAGTC	3 cut(s)	94, 98, 343
ScrFI	CCNGG	2 cut(s)	15, 113
SetI	ASST	8 cut(s)	38, 51, 123, 150, 176, 206, 211, 237
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	50, 210
StyD4I	CCNGG	2 cut(s)	13, 111
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	1 cut(s)	167
TauI	GCSGC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	3 cut(s)	86, 101, 245
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	3 cut(s)	86, 101, 245
TspDTI	ATGAA	2 cut(s)	17, 24
Tth111I	GACNNNGTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	50, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.