Rorug02G0084800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010221
Physical Location & Seq
Reverse (-)
6807642 .. 6808958
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0084800.1

Sequence Viewer

Length: 1317 bp
ATGGCTTCATCACAAACACTTCCTTCTGACCTCTATTTCGAGATTCTGACCCGAGCATCCTTCGATACTGTTGGCCGGTGCCGGCTCGTTTCGAAACAATGGAACCACCTTACATACGATTCAAGTTTCATAAATCAACTATCTCAGAGAACCAAAACAACACACGGGGTTTTCATTCAAAGCTCGATCAGCAGTAATTATATATCCACCTTTGTTCAAGCTGTGGGTAACAACGTCGACGTCTCCAACTCCGAACAGCTGTCCTTAAGTTTCCTGCCTCAGCCGGTGAAGATTGAAGCTGCTCATCAGGGTATACTCGTTTGTGTGAGCCAGAAACGTGTTCCTCAATATTATGTCTGCAAGCCAACCACTAGGGAATGGGAGCAGATACACAACCCAAAAACGAGGTATATGACGGTAAAAATTGCCTTAATGGTGTTACGATCAAACCCGTTAAGGTACAAGATCGTCCGGTTCTCAGAACCAAAGTCTCCATATTCCAATTACAAGTCGCAGGAACACTGCTACAACCTTAGGTGTGAGGTATATGATTCCAAAGCTCGAGCATGGAAACAGTTGAACAATGTAGCTTTACCCAAAGATGCTTATATCTTGAGGTTTCAACCTGCAGTATCGGCATGCGGTGCACTCCACTGGCTTTTGTCAGACAACCGAGTCGGAATCTTTGCTTTTCATGTAGATGAAGAGAACTGGGAAATATTTGCACCACCGTGCTTGCCAGTCGATAATGTCAATGGGAATCAGGTGGTGGAGTACCAAGGCCGCCTTGCATGGATTTGTGAAGTAGAGGACTCGATAGAGCTATGGGTTATGGAAGACTACAAGAACAAAGTATGGAGTAAAAGACAGATAATAAGGATCAAAGGACTGGATCGTCTTGCTTCTTTTGCAACTCTTTGCAATAATGATGTTGCACTCATGAGAGGATTTTTCAAGATAATATTTTACAAGTTTGGAGATTATAGCTCCAAGATAGCAAATCTAGAGGAAATTTCTCGACCAGATGAGATCTTCATGTTGCAATCAGATTCAGAGCCTACTAGAATATTGAAGGGTCCATTGAAGTCTTGGGTAATAATAAGGTGGTTTCGTTCGATTAAAAAGAAGTGGTCTCCAATAACTAAGTATCGCCTCAGGACTGTTGGGAAATTCTGCAGTACATACGGGACGTATGCCATAGAGTTTGTGTTTCTGTTTTTGGCTTTGAGGACACAATTAATCCAAAGATTGACACACTATCTATATGGCATAACACATGTATTGCAAACGGGGTTGGAGTGGTTAGCTGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

438

Amino Acids

50.82

Weight (kDa)

9.31

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 6 - 47 5.4e-06 F-box-like
FBA_1 PF07734 84 - 288 5.3e-14 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 100 - 240 1.2e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 101 - 293 2.5e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 674, 894
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 78
AccI GTMKAC 2 cut(s) 237, 313
AciI CCGC 2 cut(s) 642, 784
AclWI GGATC 2 cut(s) 887, 900
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 1011, 1169
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 3 cut(s) 461, 776, 1180
AflII CTTAAG 1 cut(s) 265
AflIII ACRYGT 2 cut(s) 337, 1276
AgsI TTSAA 9 cut(s) 123, 179, 218, 296, 580, 623, 955, 1072, 1084
AleI CACNNNNGTG 1 cut(s) 730
AluBI AGCT 9 cut(s) 183, 221, 259, 299, 560, 590, 823, 987, 1307
AluI AGCT 9 cut(s) 183, 221, 259, 299, 560, 590, 823, 987, 1307
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 247, 495, 1137
Alw44I GTGCAC 1 cut(s) 645
AlwI GGATC 2 cut(s) 887, 900
Ama87I CYCGRG 2 cut(s) 51, 561
AoxI GGCC 2 cut(s) 73, 781
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 1011, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 1 cut(s) 1238
AspS9I GGNCC 1 cut(s) 1076
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 51, 561
AvaII GGWCC 1 cut(s) 1076
AxyI CCTNAGG 2 cut(s) 533, 1154
BaeGI GKGCMC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 247, 495, 1137
BfaI CTAG 3 cut(s) 372, 1004, 1062
BfmI CTRYAG 2 cut(s) 627, 1174
BfrI CTTAAG 1 cut(s) 265
BfuAI ACCTGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 1029
BisI GCNGC 2 cut(s) 300, 784
BlsI GCNGC 2 cut(s) 301, 785
Bme18I GGWCC 1 cut(s) 1076
BmeT110I CYCGRG 2 cut(s) 51, 561
BmgT120I GGNCC 1 cut(s) 1076
BmiI GGNNCC 3 cut(s) 80, 104, 1077
BmrI ACTGGG 1 cut(s) 721
BmsI GCATC 2 cut(s) 65, 592
BmuI ACTGGG 1 cut(s) 721
BpiI GAAGAC 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 1137
BsaJI CCNNGG 1 cut(s) 778
BsaWI WCCGGW 1 cut(s) 471
Bse118I RCCGGY 3 cut(s) 75, 81, 283
Bse1I ACTGG 4 cut(s) 659, 716, 740, 894
Bse21I CCTNAGG 2 cut(s) 533, 1154
BseDI CCNNGG 1 cut(s) 778
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 4 cut(s) 158, 293, 492, 1168
BseNI ACTGG 4 cut(s) 659, 716, 740, 894
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 2 cut(s) 75, 783
BshNI GGYRCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 2 cut(s) 51, 561
BsiSI CCGG 4 cut(s) 76, 82, 284, 472
BslFI GGGAC 1 cut(s) 1201
BsmAI GTCTC 3 cut(s) 247, 495, 1137
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 1201
BsnI GGCC 2 cut(s) 75, 783
Bso31I GGTCTC 1 cut(s) 1137
BsoBI CYCGRG 2 cut(s) 51, 561
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
BspACI CCGC 2 cut(s) 642, 784
BspANI GGCC 2 cut(s) 75, 783
BspCNI CTCAG 4 cut(s) 157, 292, 491, 1167
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 3 cut(s) 80, 104, 1077
BspMAI CTGCAG 2 cut(s) 631, 1178
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 2 cut(s) 887, 900
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 1137
BsrFI RCCGGY 3 cut(s) 75, 81, 283
BsrI ACTGG 4 cut(s) 659, 716, 740, 894
BssAI RCCGGY 3 cut(s) 75, 81, 283
BssECI CCNNGG 1 cut(s) 778
BssMI GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
BssNAI GTATAC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 314
Bst4CI ACNGT 5 cut(s) 70, 418, 576, 732, 1162
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 4 cut(s) 83, 362, 640, 737
BstDEI CTNAG 6 cut(s) 144, 279, 478, 533, 1143, 1154
BstF5I GGATG 1 cut(s) 56
BstKTI GATC 6 cut(s) 189, 446, 468, 882, 895, 1032
BstMAI GTCTC 3 cut(s) 247, 495, 1137
BstMBI GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 189, 635, 644, 908
BstNSI RCATGY 2 cut(s) 642, 1280
BstSFI CTRYAG 2 cut(s) 627, 1174
BstSLI GKGCMC 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 1029
BstYI RGATCY 1 cut(s) 1029
BstZ17I GTATAC 1 cut(s) 314
Bsu36I CCTNAGG 2 cut(s) 533, 1154
BsuRI GGCC 2 cut(s) 75, 783
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 520, 652
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 4 cut(s) 83, 362, 640, 737
CciI TCATGA 1 cut(s) 939
Cfr10I RCCGGY 3 cut(s) 75, 81, 283
Cfr13I GGNCC 1 cut(s) 1076
Csp6I GTAC 3 cut(s) 460, 775, 1179
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 7 cut(s) 567, 639, 695, 792, 940, 1036, 1277
CviQI GTAC 3 cut(s) 460, 775, 1179
DdeI CTNAG 6 cut(s) 144, 279, 478, 533, 1143, 1154
DpnI GATC 6 cut(s) 188, 445, 467, 881, 894, 1031
DpnII GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
DrdI GACNNNNNNGTC 2 cut(s) 674, 894
DseDI GACNNNNNNGTC 2 cut(s) 674, 894
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 778
Eco31I GGTCTC 1 cut(s) 1137
Eco47I GGWCC 1 cut(s) 1076
Eco81I CCTNAGG 2 cut(s) 533, 1154
Eco88I CYCGRG 2 cut(s) 51, 561
EcoT14I CCWWGG 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 7 cut(s) 570, 642, 698, 795, 943, 1039, 1280
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 1201
FatI CATG 7 cut(s) 566, 638, 694, 791, 939, 1035, 1276
FblI GTMKAC 2 cut(s) 237, 313
Fnu4HI GCNGC 2 cut(s) 300, 784
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 300, 784
FspBI CTAG 3 cut(s) 372, 1004, 1062
GluI GCNGC 2 cut(s) 300, 784
HaeIII GGCC 2 cut(s) 75, 783
HapII CCGG 4 cut(s) 76, 82, 284, 472
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 7 cut(s) 570, 642, 698, 795, 943, 1039, 1280
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 8 cut(s) 43, 119, 551, 675, 681, 760, 812, 1049
HpaII CCGG 4 cut(s) 76, 82, 284, 472
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 238, 314, 647
Hpy188I TCNGA 9 cut(s) 28, 48, 147, 253, 481, 667, 680, 1048, 1054
Hpy188III TCNNGA 7 cut(s) 40, 613, 940, 955, 1004, 1017, 1156
Hpy8I GTNNAC 3 cut(s) 238, 314, 647
Hpy99I CGWCG 2 cut(s) 239, 242
HpyAV CCTTC 3 cut(s) 33, 70, 1066
HpyCH4III ACNGT 5 cut(s) 70, 418, 576, 732, 1162
HpyCH4IV ACGT 4 cut(s) 234, 240, 337, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 635, 644, 908
HpyF3I CTNAG 6 cut(s) 144, 279, 478, 533, 1143, 1154
HpySE526I ACGT 4 cut(s) 234, 240, 337, 1190
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 7 cut(s) 570, 642, 698, 795, 943, 1039, 1280
KroI GCCGGC 1 cut(s) 81
KroNI GCCGGC 1 cut(s) 83
Kzo9I GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
LmnI GCTCC 2 cut(s) 382, 992
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 65, 592
MaeI CTAG 3 cut(s) 372, 1004, 1062
MaeII ACGT 4 cut(s) 234, 240, 337, 1190
MaeIII GTNAC 2 cut(s) 227, 438
MalI GATC 6 cut(s) 188, 445, 467, 881, 894, 1031
MboI GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
MboII GAAGA 4 cut(s) 301, 716, 848, 1024
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 6 cut(s) 196, 423, 502, 1011, 1169, 1235
MlyI GAGTC 2 cut(s) 684, 806
MmeI TCCRAC 3 cut(s) 270, 658, 1275
MroNI GCCGGC 1 cut(s) 81
MseI TTAA 5 cut(s) 266, 431, 455, 1119, 1238
MslI CAYNNNNRTG 2 cut(s) 699, 730
MspA1I CMGCKG 1 cut(s) 259
MspCI CTTAAG 1 cut(s) 265
MspI CCGG 4 cut(s) 76, 82, 284, 472
MwoI GCNNNNNNNGC 4 cut(s) 189, 635, 644, 908
NaeI GCCGGC 1 cut(s) 83
NdeII GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
NgoMIV GCCGGC 1 cut(s) 81
NlaIII CATG 7 cut(s) 570, 642, 698, 795, 943, 1039, 1280
NlaIV GGNNCC 3 cut(s) 80, 104, 1077
NspI RCATGY 2 cut(s) 642, 1280
NspV TTCGAA 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 730
PaeI GCATGC 1 cut(s) 642
PaeR7I CTCGAG 1 cut(s) 561
PagI TCATGA 1 cut(s) 939
PciI ACATGT 1 cut(s) 1276
PdiI GCCGGC 1 cut(s) 83
PfeI GAWTC 6 cut(s) 43, 119, 551, 681, 760, 1049
PkrI GCNGC 2 cut(s) 301, 785
PleI GAGTC 2 cut(s) 683, 806
PpsI GAGTC 2 cut(s) 683, 806
PscI ACATGT 1 cut(s) 1276
PshBI ATTAAT 1 cut(s) 1238
PspN4I GGNNCC 3 cut(s) 80, 104, 1077
PspPI GGNCC 1 cut(s) 1076
PspXI VCTCGAGB 1 cut(s) 561
PstI CTGCAG 2 cut(s) 631, 1178
PsuI RGATCY 1 cut(s) 1029
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 461, 776, 1180
RsaNI GTAC 3 cut(s) 460, 775, 1179
RseI CAYNNNNRTG 2 cut(s) 699, 730
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 5 cut(s) 266, 431, 455, 1119, 1238
SatI GCNGC 2 cut(s) 300, 784
Sau3AI GATC 6 cut(s) 186, 443, 465, 879, 892, 1029
Sau96I GGNCC 1 cut(s) 1076
SchI GAGTC 2 cut(s) 684, 806
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 2 cut(s) 65, 592
SfcI CTRYAG 2 cut(s) 627, 1174
Sfr274I CTCGAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 92
SgrDI CGTCGACG 1 cut(s) 236
SinI GGWCC 1 cut(s) 1076
SlaI CTCGAG 1 cut(s) 561
SmiMI CAYNNNNRTG 2 cut(s) 699, 730
SmlI CTYRAG 3 cut(s) 265, 561, 613
SmoI CTYRAG 3 cut(s) 265, 561, 613
SphI GCATGC 1 cut(s) 642
Sse9I AATT 6 cut(s) 196, 423, 502, 1011, 1169, 1235
SsiI CCGC 2 cut(s) 642, 784
SspI AATATT 4 cut(s) 350, 720, 963, 1068
SspMI CTAG 3 cut(s) 372, 1004, 1062
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 5 cut(s) 70, 418, 576, 732, 1162
TaiI ACGT 4 cut(s) 237, 243, 340, 1193
TasI AATT 6 cut(s) 196, 423, 502, 1011, 1169, 1235
TatI WGTACW 1 cut(s) 1178
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 6 cut(s) 43, 119, 551, 681, 760, 1049
Tru1I TTAA 5 cut(s) 266, 431, 455, 1119, 1238
Tru9I TTAA 5 cut(s) 266, 431, 455, 1119, 1238
TscAI CASTG 2 cut(s) 527, 659
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 5 cut(s) 118, 163, 683, 717, 1024
TspRI CASTG 2 cut(s) 527, 659
Vha464I CTTAAG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 1076
VspI ATTAAT 1 cut(s) 1238
XapI RAATTY 2 cut(s) 1011, 1169
XbaI TCTAGA 1 cut(s) 1003
XceI RCATGY 2 cut(s) 642, 1280
XcmI CCANNNNNNNNNTGG 1 cut(s) 1086
XhoI CTCGAG 1 cut(s) 561
XmiI GTMKAC 2 cut(s) 237, 313
XspI CTAG 3 cut(s) 372, 1004, 1062
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.