Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006323.1

Orthogroup ID

OG0010221

Physical Location & Seq

Genomic Coordinates Forward (+)

29967 .. 33575

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006323.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgggtaaggacgattcagatgtgtctggcgggaggaccaaggcagaggagaaagggaggatttcaatcatgatcgagcatcagaagatgctggatgagatggcggcggaaaggaagaagaagaaagagaaaaaggacaagaagaagaagaaatccaaggtgaagagtgacttcgtcccgacacacctcttttaccacccatctctccagcagctcactctctccttcaaccagttcacctccctccaaatactgatatcaatactgaggttacctggcgacggagacggtggtgacacggtgaggctgagtgacgccgatgaagccggacttcgtgtagcctcgtctgtaaaggatttgagagaagaacagattattaatagaagaagaagtgaagaactgaagagtctctcgatcaagagaattggggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

144

Amino Acids

16.31

Weight (kDa)

9.6

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66330
fragaria_vesca	FvH4_1g12241
malus_domestica	MD02G1136300.v1.1 MD08G1048400.v1.1 MD15G1250000.v1.1
prunus_persica	Prupe.2G102000_v2.0.a1 Prupe.7G164300_v2.0.a1
pyrus_communis	pycom15g22030
rosa_chinensis	RchiOBHm_Chr2g0100031
rosa_laevigata	RLG00000016931
rosa_multiflora	Rmu_co8338191.1_g000001 Rmu_sc0001616.1_g000058 Rmu_sc0006323.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142620
rosa_rugosa	Rorug02G0084800
rosa_samantha	Rh2AG133900 Rh2BG137600 Rh2CG139000 Rh2DG139300 Rh4BG311000
rosa_wichuraiana	Rw2G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 104, 107
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	66, 229
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	279, 413
ApeKI	GCWGC	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	4 cut(s)	172, 229, 305, 313
AvaII	GGWCC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	94, 208
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	279, 413
BisI	GCNGC	2 cut(s)	105, 212
BlsI	GCNGC	2 cut(s)	106, 213
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	78, 88
BpmI	CTGGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	39, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	39, 156
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	257, 299
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	279, 413
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	72, 414
BspACI	CCGC	3 cut(s)	30, 104, 107
BspCNI	CTCAG	2 cut(s)	258, 300
BspHI	TCATGA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	39, 156
BssMI	GATC	2 cut(s)	72, 414
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	39, 156
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	290, 301
Bst6I	CTCTTC	2 cut(s)	158, 398
BstACI	GRCGYC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	266, 308
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	75, 417
BstMAI	GTCTC	2 cut(s)	279, 413
BstMBI	GATC	2 cut(s)	72, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	214, 307, 326, 341
CviKI_1	RGCY	4 cut(s)	214, 307, 326, 341
DdeI	CTNAG	2 cut(s)	266, 308
DpnI	GATC	2 cut(s)	74, 416
DpnII	GATC	2 cut(s)	72, 414
Eam1104I	CTCTTC	2 cut(s)	158, 398
EarI	CTCTTC	2 cut(s)	158, 398
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	39, 156
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	39, 156
ErhI	CCWWGG	2 cut(s)	39, 156
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 315, 347
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	105, 212
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	105, 212
GluI	GCNGC	2 cut(s)	105, 212
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	73
HinfI	GANTC	2 cut(s)	14, 406
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	4 cut(s)	172, 229, 305, 313
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	19, 84
Hpy188III	TCNNGA	4 cut(s)	70, 178, 412, 418
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	290, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	266, 308
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	72, 414
LpnPI	CCDG	7 cut(s)	12, 77, 221, 245, 261, 288, 340
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	78, 88
MaeIII	GTNAC	4 cut(s)	167, 270, 293, 311
MalI	GATC	2 cut(s)	74, 416
MboI	GATC	2 cut(s)	72, 414
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	9 cut(s)	27, 40, 51, 197, 250, 254, 261, 297, 352
MseI	TTAA	1 cut(s)	378
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	72, 414
NlaIII	CATG	1 cut(s)	73
NmuCI	GTSAC	3 cut(s)	167, 293, 311
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	106, 213
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	105, 212
Sau3AI	GATC	2 cut(s)	72, 414
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	6 cut(s)	162, 189, 216, 242, 272, 277
SfaNI	GCATC	2 cut(s)	78, 88
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	3 cut(s)	30, 104, 107
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	39, 156
TaaI	ACNGT	2 cut(s)	290, 301
TaqI	TCGA	2 cut(s)	75, 413
TasI	AATT	1 cut(s)	423
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	3 cut(s)	167, 293, 311
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	3 cut(s)	167, 293, 311
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.