Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

6980527 .. 6982827

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12711.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTGAAAGAAAATAAAAGGGAAAAGGATGAAGAAGAAAAAAGGAAGAAGCAAGAGGAAATGCAAGACTCAAACCCAGCTCATTTGACGCTTTCGGGGTTGTTGAACTTCATTGATGGCTTGTGGTCAAGTTGTGGTGATGAGAGGATCATTGTGTTCACAACGAACCATAAGGATCGGCTTGACCCGGCACTGCTGCGTCCGGGGCGAATGGACATGCACATCAACTTGTCCTATTGCACTGCAGGGGCGTTTAGCATTTTGGCCTCAAACTATCTTGGGATTCATCGCAGCAACCGTCACAGGCTTTATGGCGAAATTGAGGGGCTAATTGAGGGCAGTGAGGTTACGCCTGCTGAGGTTGCTGAGGAGCTTTTGAAAATCGATGATGCTGAAGTTGCTCTTGAAGGACTATTGAGTTTGCTCAAGAGGAAGAAGGTTGAGAGAGATCAAGCAGAGGAGGGGAGTAACAAAGCTGAGATTCAAGAAGAGGCAGAAAACTTGCAGCTTTGCTCAGAGTTGCTAAAGATTTCCAGGGGTGCTAATTGTATGTGTGATCGATCATACTCTCATCTGCATCAAAAGTTGGCAAGTAAACAAACAATTATTCAAACCCCAATTCATATTTGTGCAAGATGGTGGATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

217

Amino Acids

24.63

Weight (kDa)

5.67

Isoelectric Point (pI)

62.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	20 - 78	1.7e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	80 - 151	8.2e-19	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	155, 183
AcuI	CTGAAG	1 cut(s)	414
AgsI	TTSAA	5 cut(s)	106, 379, 407, 485, 611
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	4 cut(s)	80, 373, 476, 508
AluI	AGCT	4 cut(s)	80, 373, 476, 508
AlwI	GGATC	2 cut(s)	155, 183
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	196, 291, 505
AsuC2I	CCSGG	2 cut(s)	188, 204
AsuHPI	GGTGA	2 cut(s)	16, 149
BbvCI	CCTCAGC	2 cut(s)	357, 366
BbvI	GCAGC	3 cut(s)	183, 303, 517
BccI	CCATC	2 cut(s)	110, 630
BciT130I	CCWGG	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	188, 204
BfmI	CTRYAG	2 cut(s)	243, 647
BisI	GCNGC	3 cut(s)	197, 292, 506
BlsI	GCNGC	3 cut(s)	198, 293, 507
Bme1390I	CCNGG	3 cut(s)	188, 204, 535
BmrFI	CCNGG	3 cut(s)	188, 204, 535
BmsI	GCATC	3 cut(s)	379, 586, 633
Bpu10I	CCTNAGC	2 cut(s)	357, 366
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	188, 204
Bsa29I	ATCGAT	2 cut(s)	384, 559
BsaJI	CCNNGG	2 cut(s)	203, 534
BseBI	CCWGG	1 cut(s)	535
BseCI	ATCGAT	2 cut(s)	384, 559
BseDI	CCNNGG	2 cut(s)	203, 534
BseGI	GGATG	2 cut(s)	34, 648
BseMII	CTCAG	4 cut(s)	348, 357, 468, 528
BseRI	GAGGAG	2 cut(s)	383, 473
BseXI	GCAGC	3 cut(s)	183, 303, 517
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	2 cut(s)	384, 559
BsiSI	CCGG	2 cut(s)	188, 203
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	147, 175, 448, 556, 560
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	4 cut(s)	349, 358, 469, 527
BspDI	ATCGAT	2 cut(s)	384, 559
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	155, 183
BssECI	CCNNGG	2 cut(s)	203, 534
BssMI	GATC	5 cut(s)	147, 175, 448, 556, 560
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	4 cut(s)	357, 366, 477, 514
BstF5I	GGATG	2 cut(s)	34, 648
BstKTI	GATC	5 cut(s)	150, 178, 451, 559, 563
BstMBI	GATC	5 cut(s)	147, 175, 448, 556, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 362, 398
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	186, 202, 533
BstSFI	CTRYAG	2 cut(s)	243, 647
BstV1I	GCAGC	3 cut(s)	183, 303, 517
Bsu15I	ATCGAT	2 cut(s)	384, 559
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	2 cut(s)	384, 559
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	34, 648
BtsI	GCAGTG	3 cut(s)	191, 240, 346
BtsIMutI	CAGTG	3 cut(s)	191, 240, 346
Cac8I	GCNNGC	1 cut(s)	354
ClaI	ATCGAT	2 cut(s)	384, 559
CseI	GACGC	2 cut(s)	97, 188
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	9 cut(s)	80, 120, 181, 266, 307, 328, 373, 476, 508
CviKI_1	RGCY	9 cut(s)	80, 120, 181, 266, 307, 328, 373, 476, 508
DdeI	CTNAG	4 cut(s)	357, 366, 477, 514
DpnI	GATC	5 cut(s)	149, 177, 450, 558, 562
DpnII	GATC	5 cut(s)	147, 175, 448, 556, 560
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	533
FaeI	CATG	1 cut(s)	220
FaiI	YATR	6 cut(s)	171, 218, 312, 551, 565, 624
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	197, 292, 506
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	197, 292, 506
GluI	GCNGC	3 cut(s)	197, 292, 506
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	188, 203
HgaI	GACGC	2 cut(s)	97, 188
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	3 cut(s)	68, 283, 481
HpaII	CCGG	2 cut(s)	188, 203
HphI	GGTGA	2 cut(s)	16, 149
Hpy166II	GTNNAC	2 cut(s)	159, 596
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	3 cut(s)	404, 427, 485
Hpy8I	GTNNAC	2 cut(s)	159, 596
HpyAV	CCTTC	2 cut(s)	401, 430
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	7 cut(s)	64, 220, 240, 245, 505, 577, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 362, 398
HpyF3I	CTNAG	4 cut(s)	357, 366, 477, 514
Hsp92II	CATG	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	147, 175, 448, 556, 560
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	90, 201, 216, 231, 289, 366, 520, 547
Lsp1109I	GCAGC	3 cut(s)	183, 303, 517
LweI	GCATC	3 cut(s)	379, 586, 633
MaeIII	GTNAC	3 cut(s)	299, 346, 467
MalI	GATC	5 cut(s)	149, 177, 450, 558, 562
MboI	GATC	5 cut(s)	147, 175, 448, 556, 560
MboII	GAAGA	5 cut(s)	44, 47, 58, 445, 500
MluCI	AATT	5 cut(s)	318, 330, 544, 603, 618
MlyI	GAGTC	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	627
MspI	CCGG	2 cut(s)	188, 203
MspR9I	CCNGG	3 cut(s)	188, 204, 535
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	205, 362, 398
NciI	CCSGG	2 cut(s)	188, 204
NdeII	GATC	5 cut(s)	147, 175, 448, 556, 560
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	283, 481
PkrI	GCNGC	3 cut(s)	198, 293, 507
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	627
SatI	GCNGC	3 cut(s)	197, 292, 506
Sau3AI	GATC	5 cut(s)	147, 175, 448, 556, 560
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	188, 204, 535
SetI	ASST	7 cut(s)	82, 348, 363, 375, 441, 478, 510
SfaNI	GCATC	3 cut(s)	379, 586, 633
SfcI	CTRYAG	2 cut(s)	243, 647
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	5 cut(s)	318, 330, 544, 603, 618
StyD4I	CCNGG	3 cut(s)	186, 202, 533
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	384, 559
TasI	AATT	5 cut(s)	318, 330, 544, 603, 618
TfiI	GAWTC	2 cut(s)	283, 481
TscAI	CASTG	3 cut(s)	198, 247, 346
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	196, 291, 505
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	45, 100, 275, 611
TspRI	CASTG	3 cut(s)	198, 247, 346
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.