Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

12080414 .. 12081522

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017009

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGTGCTACTTGCCGTATGTGCTTGCTAAAGCCAAGGACATTAAGCAAGAGGAGAAGTTGTTGAAGATTTTCAGCTGCGGCGGCAATAGCTCTCGATCGATAGGCCTTGAGCACCCTGCAACTTTTGAGACAATGGCGATGGATCCGGAGCAGAAGAAAATGGTTATGGATGATTTGGATCGGTTTGTGAGGAGGAGGGACTTTTACAAGAGGGTTGGCAAGGCTTGGAAGAGAGGTGTGGAAGCCGGAAATCGGGTGGCAGCTGAGAAGTTCATGGGGAGTAGATACAATAGACCATCACAAATGAAGTTTACACTCTCAGGTCTACTTAATGTCATTGATGGTCTGTGGTCATGTGTTGGAGATGAGAGGATCATCATCTTCACCACTAACCACAAGGATCGGCTAGACCCGGCATTGTTGCGACCTGGACGAATGGATGTGCACATTCACATGTCCTATTGTACTCCAAGCGGGTTCAGGATCTTGGCCTCTAACTACCTTGGCATTCATGAGAGCAACCCTCATCGGCTCTGTGGAGCCTGCGCACAGAGTTTGATAGAGAGCACAGAGGTCACCCCTGCACAGGTTGCTGAGGAGCTTGTGCAGAGTGATGATGCTGATGTTGCTCTTGAAGGGCTTGTCAATTTTCTCAAATGCAAGATAGAGGTTGATAGCAAGAAAACAAAGGATGAAGGGACTAAGAAAGCAGAGAGTTTCCAAGAAGAGTTGGAACAACTTGATAATGGTACTCACCCAATTTTTTCCAAGAGTACTGCTGCGTTTTACAAAGAGGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

269

Amino Acids

30.26

Weight (kDa)

6.67

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	95 - 154	3.3e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	156 - 229	4.3e-17	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	3 cut(s)	81, 84, 477
AclWI	GGATC	6 cut(s)	140, 153, 189, 383, 411, 494
AfaI	GTAC	3 cut(s)	469, 754, 778
AfiI	CCNNNNNNNGG	2 cut(s)	255, 589
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	2 cut(s)	67, 638
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	4 cut(s)	78, 93, 266, 604
AluI	AGCT	4 cut(s)	78, 93, 266, 604
Alw21I	GWGCWC	3 cut(s)	117, 450, 572
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	6 cut(s)	140, 153, 189, 383, 411, 494
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	106, 492
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	78, 263, 782
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	379, 571, 749
BaeGI	GKGCMC	1 cut(s)	450
BamHI	GGATCC	1 cut(s)	145
Bbv12I	GWGCWC	3 cut(s)	117, 450, 572
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	65, 275, 769
BccI	CCATC	3 cut(s)	136, 307, 338
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	5 cut(s)	79, 82, 85, 264, 783
BlsI	GCNGC	5 cut(s)	80, 83, 86, 265, 784
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	416, 432
BmiI	GGNNCC	2 cut(s)	147, 544
BmrFI	CCNGG	2 cut(s)	416, 432
BmsI	GCATC	1 cut(s)	610
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	180, 380
BsaJI	CCNNGG	2 cut(s)	36, 505
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 589
Bse8I	GATNNNNATC	2 cut(s)	180, 380
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	432
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	36, 505
BseGI	GGATG	3 cut(s)	178, 448, 700
BseJI	GATNNNNATC	2 cut(s)	180, 380
BseLI	CCNNNNNNNGG	2 cut(s)	255, 589
BseMII	CTCAG	3 cut(s)	258, 336, 588
BseRI	GAGGAG	4 cut(s)	68, 208, 211, 614
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	3 cut(s)	65, 275, 769
BsgI	GTGCAG	2 cut(s)	570, 629
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	108, 494
BshVI	ATCGAT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	3 cut(s)	117, 450, 572
BsiSI	CCGG	3 cut(s)	149, 249, 416
BslFI	GGGAC	2 cut(s)	215, 715
BslI	CCNNNNNNNGG	2 cut(s)	255, 589
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	2 cut(s)	215, 715
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	108, 494
Bsp1286I	GDGCHC	3 cut(s)	117, 450, 572
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
BspACI	CCGC	3 cut(s)	81, 84, 477
BspANI	GGCC	2 cut(s)	108, 494
BspCNI	CTCAG	3 cut(s)	259, 335, 589
BspDI	ATCGAT	1 cut(s)	101
BspEI	TCCGGA	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	147, 544
BspPI	GGATC	6 cut(s)	140, 153, 189, 383, 411, 494
BssECI	CCNNGG	2 cut(s)	36, 505
BssMI	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
BssT1I	CCWWGG	2 cut(s)	36, 505
Bst2UI	CCWGG	1 cut(s)	432
Bst6I	CTCTTC	2 cut(s)	227, 723
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	27, 547
BstDEI	CTNAG	4 cut(s)	267, 322, 597, 705
BstEII	GGTNACC	1 cut(s)	577
BstF5I	GGATG	3 cut(s)	178, 448, 700
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	6 cut(s)	101, 148, 184, 378, 406, 489
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 84, 90, 593, 629
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	460
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	2 cut(s)	414, 430
BstSLI	GKGCMC	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	65, 275, 769
BstX2I	RGATCY	2 cut(s)	145, 486
BstYI	RGATCY	2 cut(s)	145, 486
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	108, 494
BsuTUI	ATCGAT	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	178, 448, 700
Cac8I	GCNNGC	2 cut(s)	27, 547
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	551
ClaI	ATCGAT	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	468, 753, 777
CviAII	CATG	4 cut(s)	277, 357, 457, 515
CviQI	GTAC	3 cut(s)	468, 753, 777
DdeI	CTNAG	4 cut(s)	267, 322, 597, 705
DpnI	GATC	6 cut(s)	100, 147, 183, 377, 405, 488
DpnII	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
Eam1104I	CTCTTC	2 cut(s)	227, 723
EarI	CTCTTC	2 cut(s)	227, 723
Eco130I	CCWWGG	2 cut(s)	36, 505
Eco147I	AGGCCT	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	36, 505
ErhI	CCWWGG	2 cut(s)	36, 505
FaeI	CATG	4 cut(s)	280, 360, 460, 518
FaiI	YATR	6 cut(s)	21, 170, 278, 358, 458, 516
FaqI	GGGAC	2 cut(s)	215, 715
FatI	CATG	4 cut(s)	276, 356, 456, 514
FauI	CCCGC	1 cut(s)	470
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	5 cut(s)	79, 82, 85, 264, 783
FokI	GGATG	3 cut(s)	185, 455, 707
Fsp4HI	GCNGC	5 cut(s)	79, 82, 85, 264, 783
FspBI	CTAG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	550
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	5 cut(s)	79, 82, 85, 264, 783
HaeIII	GGCC	2 cut(s)	108, 494
HapII	CCGG	3 cut(s)	149, 249, 416
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	280, 360, 460, 518
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HpaII	CCGG	3 cut(s)	149, 249, 416
HphI	GGTGA	3 cut(s)	379, 571, 749
Hpy166II	GTNNAC	3 cut(s)	315, 329, 448
Hpy188III	TCNNGA	5 cut(s)	96, 149, 484, 515, 635
Hpy8I	GTNNAC	3 cut(s)	315, 329, 448
HpyAV	CCTTC	2 cut(s)	632, 692
HpyCH4V	TGCA	5 cut(s)	122, 448, 587, 610, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 84, 90, 593, 629
HpyF3I	CTNAG	4 cut(s)	267, 322, 597, 705
Hsp92II	CATG	4 cut(s)	280, 360, 460, 518
HspAI	GCGC	1 cut(s)	549
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
LmnI	GCTCC	3 cut(s)	151, 542, 601
Lsp1109I	GCAGC	3 cut(s)	65, 275, 769
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	6 cut(s)	100, 147, 183, 377, 405, 488
MboI	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
MboII	GAAGA	5 cut(s)	79, 169, 244, 376, 740
MflI	RGATCY	2 cut(s)	145, 486
MhlI	GDGCHC	3 cut(s)	117, 450, 572
MluCI	AATT	2 cut(s)	649, 762
MmeI	TCCRAC	2 cut(s)	343, 714
MroI	TCCGGA	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	45, 333
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	78, 266
MspI	CCGG	3 cut(s)	149, 249, 416
MspR9I	CCNGG	2 cut(s)	416, 432
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	22, 84, 90, 593, 629
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
NlaIII	CATG	4 cut(s)	280, 360, 460, 518
NlaIV	GGNNCC	2 cut(s)	147, 544
NmuCI	GTSAC	1 cut(s)	577
NsbI	TGCGCA	1 cut(s)	550
NspI	RCATGY	1 cut(s)	460
PagI	TCATGA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	108
PciI	ACATGT	1 cut(s)	456
PctI	GAATGC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	80, 83, 86, 265, 784
Ple19I	CGATCG	1 cut(s)	101
PscI	ACATGT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	430
PspEI	GGTNACC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	147, 544
PsuI	RGATCY	2 cut(s)	145, 486
PvuI	CGATCG	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	78, 266
RsaI	GTAC	3 cut(s)	469, 754, 778
RsaNI	GTAC	3 cut(s)	468, 753, 777
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	45, 333
SatI	GCNGC	5 cut(s)	79, 82, 85, 264, 783
Sau3AI	GATC	6 cut(s)	98, 145, 181, 375, 403, 486
ScaI	AGTACT	1 cut(s)	778
ScrFI	CCNGG	2 cut(s)	416, 432
SduI	GDGCHC	3 cut(s)	117, 450, 572
SfaNI	GCATC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	649, 762
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	3 cut(s)	81, 84, 477
SspMI	CTAG	1 cut(s)	410
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	414, 430
StyI	CCWWGG	2 cut(s)	36, 505
TaqI	TCGA	2 cut(s)	97, 101
TasI	AATT	2 cut(s)	649, 762
TatI	WGTACW	2 cut(s)	467, 776
TauI	GCSGC	2 cut(s)	84, 87
Tru1I	TTAA	2 cut(s)	45, 333
Tru9I	TTAA	2 cut(s)	45, 333
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	78, 263, 782
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	265, 323, 503, 711
VneI	GTGCAC	1 cut(s)	446
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.