Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028022.1

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

3795 .. 4474

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028022.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggtttccgaagccaagtttacactctcgggtctactgaatgtcgtcgatggtctatggtcaagttgcggtgatgagagaattattgtgtttaccaccaaccacaaggagcggctagaccctgcattgttgaggcctggtcgaatggacatgcacattcacatgtcgtattgcaccccaaaagggttcaagaccttggcttcaaactacctcgacattcaggacaccagcgaacatcgcctgtgtggagaaattgaagcattgatggagagcactgacatcacccctgcagaggtttgtgaggagcttatgaggggtgggggtgatggtgatgaagccgatgctgctcttgaaggacttgtcaattgtctcaagcgtaagaggcttgagaccaacaagatagaggatgaagaggttgggaaagcaaagaggcagaaaacagattataatgcatctgaaatttccgaaaattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

158

Amino Acids

17.7

Weight (kDa)

4.81

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccBSI	CCGCTC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	2 cut(s)	69, 112
AcsI	RAATTY	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	183, 292, 471
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	4 cut(s)	190, 204, 257, 353
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	374, 383
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	459
AsuHPI	GGTGA	4 cut(s)	83, 274, 335, 341
AvaI	CYCGRG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	44, 259, 320
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	374, 383
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	113, 345
BlsI	GCNGC	2 cut(s)	114, 346
Bme1390I	CCNGG	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	331, 461
BpuEI	CTTGAG	2 cut(s)	356, 407
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 292, 471
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	183, 292, 471
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	183, 292, 471
BsmAI	GTCTC	2 cut(s)	374, 383
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	275
BspACI	CCGC	2 cut(s)	69, 112
BspANI	GGCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	374, 383
BstMWI	GCNNNNNNNGC	3 cut(s)	237, 344, 382
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	154, 166
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	273
CviAII	CATG	2 cut(s)	151, 163
CviJI	RGCY	7 cut(s)	14, 115, 136, 200, 307, 338, 385
CviKI_1	RGCY	7 cut(s)	14, 115, 136, 200, 307, 338, 385
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	154, 166
FaiI	YATR	5 cut(s)	58, 152, 164, 311, 447
FatI	CATG	2 cut(s)	150, 162
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	113, 345
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	2 cut(s)	113, 345
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	113, 345
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	154, 166
HphI	GGTGA	4 cut(s)	83, 274, 335, 341
Hpy166II	GTNNAC	3 cut(s)	21, 35, 93
Hpy188I	TCNGA	3 cut(s)	10, 457, 466
Hpy188III	TCNNGA	3 cut(s)	190, 221, 350
Hpy8I	GTNNAC	3 cut(s)	21, 35, 93
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	347
HpyCH4V	TGCA	5 cut(s)	125, 154, 174, 290, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	237, 344, 382
Hsp92II	CATG	2 cut(s)	154, 166
LmnI	GCTCC	2 cut(s)	109, 304
LpnPI	CCDG	7 cut(s)	123, 135, 150, 206, 241, 254, 300
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	331, 461
MaeI	CTAG	1 cut(s)	116
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	422
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	5 cut(s)	81, 252, 364, 459, 469
MnlI	CCTC	9 cut(s)	126, 221, 286, 295, 306, 375, 397, 406, 423
Mph1103I	ATGCAT	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	237, 344, 382
NlaIII	CATG	2 cut(s)	154, 166
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	154, 166
PceI	AGGCCT	1 cut(s)	136
PciI	ACATGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	114, 346
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	2 cut(s)	113, 345
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	5 cut(s)	197, 213, 297, 309, 417
SfaNI	GCATC	2 cut(s)	331, 461
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	371, 386
SmoI	CTYRAG	2 cut(s)	371, 386
Sse9I	AATT	5 cut(s)	81, 252, 364, 459, 469
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	69, 112
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	3 cut(s)	48, 142, 213
TasI	AATT	5 cut(s)	81, 252, 364, 459, 469
TauI	GCSGC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	348, 423
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	2 cut(s)	154, 166
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.