Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Forward (+)

21224104 .. 21227283

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGCCCACTCTGTTCCTCCATTTCTTCCTTTTCTTATTCACAACCACTGTTTCTAACCTCATCCCCGCAGTTCACAGCAACTGCATTGAAGCCCAGCAACAATCATTGCTCCATTTCAAGAAAAGTCTTGAATTTGATTCTTCCGAATCCTCCAAGCTTATCACATGGAATTCGAGCACCGACTGCTGTTCTTGGCTCGGTGTAAATTGCAGCACCAATGGGCGTGTTGTCGGACTTGACCTCAGCGGAGAGTATTTCTCATGCAACATTGACAATTCAAGCAGTCTCTTCCAACTTCGACATCTTCAGAGCCTCAATTTGGCCTATAACTTCTTCGATCGCTCTGCAATTCCATCTGCAATTGGAAAGCTTGCAAATTTGAGGTATTTGAATTTAAGTGAAGCTCTTTTTTCTGGCCAAATTCCCATTGAGGTTGCACGCTTGACAAGGTTGGTAGTTCTTGATCTCTCTATGTATTACTCGGGTGGGGAGTTAAAACTTGAGAACCCGAATTTAGGCACTTTAATCCAGAACCTTACAGAGCTTACTGAGTTAAATCTTGGTGGTCTAAACCTATCAGCTGAGGGAACTCTATGGAGCCAAACCATATCATCTTCACTTCCAAAGCTGAGTGCGTTGACCTTGTCCTATTGTGATCTTTCAGGCCCTATTCATGAATCATTTGCCAATTTTTCAAGCTTGATTTCCTTGAGTCTCTCTGACTGTAACTTGTATGGAGCATTTCCCAAAGAGATATTCCAGATACCTTCACTACAGTCTGTTGTCCTATCAGATAATTCAGAGCTTCGTGGTTCCTTACCGGAGTTTCCAAAGAATGGATCTCTTGAATTCCTAGTCCTTAGCAGGACTAAATTTTCAGGAGTCTTGCCGGACTCTATTGGCAACCTTAAATTGCTATCTAGATTAGATCTTTCAGATTGCAATTTCACAGGAGCAGTTCCAAAGTCACTGGCAAACCTAACACAATTGGAGGATTTGGCCTTGTCATCCAACAAGTTTTCTAGTCCGATAAATTCTATTCAATGGGACAAACTCATCAAGCTTGACGGTCTCGACTTGGCCAACAATCTACTCTACGGGAGTATTCCATTGTCTCCATTTTCTATTCCCTCACTGCAGAGGTTAGATCTTTCTGGAAATAACTTCTCTGGTCAATTGCTTGAATTTTCTAATGTCTCTTCGTACTTGCTGGACGTACTTGATTTGAGTAGCAACAATTTGGAAGGATCAATACCCGTGTCTATCTTTAATCTTCCAAACCTTCTAATATTTAATCTTTCTTCAAACAACTTGAGTGGTTTTCCTTTTTATGCCCCTCACATTCAGGATATCTTGTTGTTCAATCTCAATTTGAGTAACATGATGAGTAACAGATTTTCTTCGTTTCTTGATCTATCCTACAATAGCTTGTTGTTCAATCATAATGAGACCTACTCATCACCACCCTCCCTCCGGATTAAGGATTTGTATTTGGCTTCTAACAAGTTGAAAACATTCCCAAGTTTCCTGAAAAAAATTTCTGTTTTAATTTCCTTGGACCTTTCAGACAACCAGATTCAAGGTCAGATACCCAATTGGATTTGGGGGCTTGGTATTGATAATCTATATCTATGTCGAAACAAGCTGGTAAGTCTAGAAGCTCCTTTACTTGGTTGTAATACTTGTACTTACCATCTGATGAATCTTGATCTTCACTCAAACCAGATTCAGGGACAAATACCATTGTTTGTAAGTGGTAATTATTTGGATTACTCAGGAAATAATTTCAGCTCTAGTATACCAATTGACATTGGTGATTTCATTGTTTCCACGGCCTACCTTTCTCTTTCAAGCAGTAACTTGTTTGGGGAAATTCCAAAATCAATATGCAAAGCAAGTGTTATACTTCTTGATCTCTCTAATAACTCTTTGAGTGGAATCATTCCCCAGTGCTTGACTCAGACTACTCTTTCTGTCCTTGATTTGAGGAGAAACAACCTTACTGGATCTATCCCTGATACTTTTCTTGAAGGTTGTAATTTGGAAACTCTATCTCTGAGCAGAAATCAGATACAAGGTCAATTTCCAAAATCTCTAGCCAATTGTTCAAGCTTAAAGGTTTTAGACCTTGGAATCAATCAAATAACAGATGCCTTTCCCTGCCCGTTGAAGACCATATCCACCTTGCATGTCCTTGTGTTGCGATCCAACAAATTTTATGGACCCATTGGATGTCCTGAGACCAATGGCACCTGGTCGGAGCTTCAAATCATAGACTTGGCTCATAACAGTTTCAATGGTGAAATACCAGGTACATCATTGACAACATGGCAGGCAATGATGGTTAATGCAAATGAGATCGGATATTACCTTAGCTTTTCGTGGGGAGCAGGTGGTGCATTTAGGCTGGCATTTCATTATGGAGATGCAGTAACAACTACAAGCAAAGGTCTAGAGACGGATCTTGTAAAAATTTTTTCTAGCTTCAATTCGATTGACTTCTCTGCTAACAAGTTCAGTGGAACAATACCCAAGGAAATAGGCCAATTGAGAACATTATATACACTCAATCTGTCCAGTAATGCTTTCACAGGCAAAATCCCATCATCCTTTGGTAACATGAGAAGCATAGAGTCCTTAGACCTCTCACAGAACCACCTGAGCGGCCAAATTCCACCGCAGCTTGCAAATCTCACTTTCCTTTCGTACTTGAATGTCTCATATAATCAACTGACAGGAAGGATCCCAACCAGCACTCAGTTTTCGACATTTCCAAATAACTCCTTCGAGGGTAACAAAGGATTATGGGGGCCTCCTCTGACATCGGATACAGCAATCGTATTGCCACCTCCAATGTTAAATGGAAACTCAAGTAATCCGAATTCTGGAGATGAGATTGATTGGAATGTCATCAGTGTTGAAATTGGATTTACATGTGGGTTTGGAATTGCCGTCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGAGCTATGTTTAACATCCTGTTCAAGATATTCCCTCGGCTGGAACACAGATTTGGTAATCACAGAAGGCATGTTTACATAAATCAAAGGTATTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

1033

Amino Acids

114.22

Weight (kDa)

5.86

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 71	1.1e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	79 - 262	3.6e-08	Leucine-rich repeat region
LRR_14	PF23598	281 - 339	7.4e-06	Leucine-rich repeat region
LRR_8	PF13855	656 - 715	4.6e-09	Leucine rich repeat
LRR_4	PF12799	680 - 717	5.4e-07	Leucine Rich repeats (2 copies)
LRR_8	PF13855	851 - 911	7.5e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2381
Acc36I	ACCTGC	1 cut(s)	2381
AccB1I	GGYRCC	1 cut(s)	2249
AccB7I	CCANNNNNTGG	1 cut(s)	836
AccBSI	CCGCTC	1 cut(s)	2664
AccI	GTMKAC	1 cut(s)	1798
AccIII	TCCGGA	1 cut(s)	1473
AciI	CCGC	4 cut(s)	66, 246, 2664, 2678
AclWI	GGATC	7 cut(s)	847, 1255, 2014, 2199, 2469, 2737, 2750
AcoI	YGGCCR	3 cut(s)	415, 1080, 2665
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	5 cut(s)	1205, 1218, 1687, 2314, 2708
AfiI	CCNNNNNNNGG	9 cut(s)	319, 515, 836, 1473, 1480, 1670, 1729, 2885, 3037
AflIII	ACRYGT	1 cut(s)	2933
AjnI	CCWGG	2 cut(s)	2252, 2308
AjuI	GAANNNNNNNTTGG	4 cut(s)	740, 772, 3033, 3065
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	7 cut(s)	847, 1255, 2014, 2199, 2469, 2737, 2750
AlwNI	CAGNNNCTG	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	1473
AoxI	GGCC	9 cut(s)	321, 415, 664, 999, 1080, 1833, 2542, 2665, 2810
ApeKI	GCWGC	2 cut(s)	210, 2680
Asp700I	GAANNNNTTC	1 cut(s)	1514
AspS9I	GGNCC	4 cut(s)	665, 1558, 2222, 2810
AsuHPI	GGTGA	3 cut(s)	1452, 1826, 2312
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	1558, 2222
BalI	TGGCCA	2 cut(s)	417, 1082
BamHI	GGATCC	1 cut(s)	2742
BanI	GGYRCC	1 cut(s)	2249
BarI	GAAGNNNNNNTAC	4 cut(s)	1236, 1268, 1650, 1682
BbsI	GAAGAC	1 cut(s)	2177
Bbv12I	GWGCWC	1 cut(s)	179
BbvCI	CCTCAGC	2 cut(s)	242, 582
BbvI	GCAGC	2 cut(s)	222, 2692
BccI	CCATC	5 cut(s)	361, 1701, 2335, 2611, 2973
BceAI	ACGGC	2 cut(s)	1848, 2936
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	2254, 2310
BciVI	GTATCC	1 cut(s)	2821
BfaI	CTAG	8 cut(s)	854, 921, 1023, 1655, 1794, 2096, 2453, 2481
BfmI	CTRYAG	2 cut(s)	773, 1136
BfuAI	ACCTGC	1 cut(s)	2381
BfuI	GTATCC	1 cut(s)	2821
BglII	AGATCT	2 cut(s)	928, 1147
BisI	GCNGC	3 cut(s)	211, 2665, 2681
BlsI	GCNGC	3 cut(s)	212, 2666, 2682
Bme1390I	CCNGG	2 cut(s)	2254, 2310
Bme18I	GGWCC	2 cut(s)	1558, 2222
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	665, 1558, 2222, 2810
BmiI	GGNNCC	6 cut(s)	599, 814, 2224, 2251, 2744, 2811
BmrFI	CCNGG	2 cut(s)	2254, 2310
BmrI	ACTGGG	1 cut(s)	1942
BmsI	GCATC	2 cut(s)	2140, 2416
BmuI	ACTGGG	1 cut(s)	1942
BpiI	GAAGAC	1 cut(s)	2177
BplI	GAGNNNNNCTC	4 cut(s)	242, 274, 1439, 1471
BpmI	CTGGAG	1 cut(s)	2907
Bpu10I	CCTNAGC	5 cut(s)	242, 582, 860, 2372, 2660
BpuEI	CTTGAG	4 cut(s)	521, 730, 1333, 2854
BsaI	GGTCTC	3 cut(s)	1076, 1442, 2234
BsaJI	CCNNGG	5 cut(s)	1554, 1830, 2128, 2532, 3032
BsaWI	WCCGGW	2 cut(s)	820, 1473
BsaXI	ACNNNNNCTCC	4 cut(s)	1455, 1485, 2415, 2445
Bsc4I	CCNNNNNNNGG	9 cut(s)	319, 515, 836, 1473, 1480, 1670, 1729, 2885, 3037
Bse1I	ACTGG	4 cut(s)	975, 1948, 2008, 2577
Bse3DI	GCAATG	2 cut(s)	104, 2343
BseAI	TCCGGA	1 cut(s)	1473
BseBI	CCWGG	2 cut(s)	2254, 2310
BseDI	CCNNGG	5 cut(s)	1554, 1830, 2128, 2532, 3032
BseGI	GGATG	5 cut(s)	60, 1007, 2237, 2606, 3012
BseLI	CCNNNNNNNGG	9 cut(s)	319, 515, 836, 1473, 1480, 1670, 1729, 2885, 3037
BseMI	GCAATG	2 cut(s)	104, 2343
BseNI	ACTGG	4 cut(s)	975, 1948, 2008, 2577
BseRI	GAGGAG	2 cut(s)	2002, 2805
BseXI	GCAGC	2 cut(s)	222, 2692
BseYI	CCCAGC	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	9 cut(s)	323, 417, 666, 1001, 1082, 1835, 2544, 2667, 2812
BshNI	GGYRCC	1 cut(s)	2249
BsiEI	CGRYCG	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	821, 890, 1474
BslFI	GGGAC	2 cut(s)	1061, 1746
BslI	CCNNNNNNNGG	9 cut(s)	319, 515, 836, 1473, 1480, 1670, 1729, 2885, 3037
BsmBI	CGTCTC	2 cut(s)	2450, 3088
BsmFI	GGGAC	2 cut(s)	1061, 1746
BsnI	GGCC	9 cut(s)	323, 417, 666, 1001, 1082, 1835, 2544, 2667, 2812
Bso31I	GGTCTC	3 cut(s)	1076, 1442, 2234
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	1473
BspACI	CCGC	4 cut(s)	66, 246, 2664, 2678
BspANI	GGCC	9 cut(s)	323, 417, 666, 1001, 1082, 1835, 2544, 2667, 2812
BspEI	TCCGGA	1 cut(s)	1473
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	6 cut(s)	599, 814, 2224, 2251, 2744, 2811
BspMAI	CTGCAG	1 cut(s)	1140
BspMI	ACCTGC	1 cut(s)	2381
BspPI	GGATC	7 cut(s)	847, 1255, 2014, 2199, 2469, 2737, 2750
BspT107I	GGYRCC	1 cut(s)	2249
BspTNI	GGTCTC	3 cut(s)	1076, 1442, 2234
BsrBI	CCGCTC	1 cut(s)	2664
BsrDI	GCAATG	2 cut(s)	104, 2343
BsrI	ACTGG	4 cut(s)	975, 1948, 2008, 2577
BssECI	CCNNGG	5 cut(s)	1554, 1830, 2128, 2532, 3032
BssNAI	GTATAC	1 cut(s)	1799
BssT1I	CCWWGG	3 cut(s)	1554, 2128, 2532
Bst1107I	GTATAC	1 cut(s)	1799
Bst2UI	CCWGG	2 cut(s)	2254, 2310
Bst4CI	ACNGT	5 cut(s)	49, 725, 777, 1070, 2291
Bst6I	CTCTTC	2 cut(s)	293, 1204
BstAPI	GCANNNNNTGC	2 cut(s)	183, 2396
BstC8I	GCNNGC	5 cut(s)	372, 439, 2334, 2409, 2685
BstDSI	CCRYGG	1 cut(s)	1830
BstF5I	GGATG	5 cut(s)	60, 1007, 2237, 2606, 3012
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 2396
BstNI	CCWGG	2 cut(s)	2254, 2310
BstNSI	RCATGY	3 cut(s)	2192, 2937, 3071
BstSCI	CCNGG	2 cut(s)	2252, 2308
BstSFI	CTRYAG	2 cut(s)	773, 1136
BstV1I	GCAGC	2 cut(s)	222, 2692
BstV2I	GAAGAC	1 cut(s)	2177
BstX2I	RGATCY	6 cut(s)	839, 928, 1147, 2006, 2461, 2742
BstYI	RGATCY	6 cut(s)	839, 928, 1147, 2006, 2461, 2742
BstZ17I	GTATAC	1 cut(s)	1799
BsuI	GTATCC	1 cut(s)	2821
BsuRI	GGCC	9 cut(s)	323, 417, 666, 1001, 1082, 1835, 2544, 2667, 2812
BtgI	CCRYGG	1 cut(s)	1830
BtsCI	GGATG	5 cut(s)	60, 1007, 2237, 2606, 3012
BtsI	GCAGTG	1 cut(s)	1133
BtsIMutI	CAGTG	6 cut(s)	45, 968, 1133, 1955, 2524, 2920
BveI	ACCTGC	1 cut(s)	2381
Cac8I	GCNNGC	5 cut(s)	372, 439, 2334, 2409, 2685
CaiI	CAGNNNCTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	4 cut(s)	665, 1558, 2222, 2810
CsiI	ACCWGGT	2 cut(s)	2252, 2308
Csp6I	GTAC	5 cut(s)	1204, 1217, 1686, 2313, 2707
CspCI	CAANNNNNGTGG	4 cut(s)	1297, 1332, 2500, 2535
CviAII	CATG	9 cut(s)	165, 261, 674, 1381, 2189, 2328, 2620, 2934, 3068
CviQI	GTAC	5 cut(s)	1204, 1217, 1686, 2313, 2707
EaeI	YGGCCR	3 cut(s)	415, 1080, 2665
Eam1104I	CTCTTC	2 cut(s)	293, 1204
EarI	CTCTTC	2 cut(s)	293, 1204
Eco130I	CCWWGG	3 cut(s)	1554, 2128, 2532
Eco31I	GGTCTC	3 cut(s)	1076, 1442, 2234
Eco32I	GATATC	1 cut(s)	1351
Eco47I	GGWCC	2 cut(s)	1558, 2222
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	2 cut(s)	665, 2810
EcoRI	GAATTC	3 cut(s)	169, 848, 2881
EcoRII	CCWGG	2 cut(s)	2252, 2308
EcoRV	GATATC	1 cut(s)	1351
EcoT14I	CCWWGG	3 cut(s)	1554, 2128, 2532
ErhI	CCWWGG	3 cut(s)	1554, 2128, 2532
Esp3I	CGTCTC	2 cut(s)	2450, 3088
FaeI	CATG	9 cut(s)	168, 264, 677, 1384, 2192, 2331, 2623, 2937, 3071
FaqI	GGGAC	2 cut(s)	1061, 1746
FatI	CATG	9 cut(s)	164, 260, 673, 1380, 2188, 2327, 2619, 2933, 3067
FauI	CCCGC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	1798
Fnu4HI	GCNGC	3 cut(s)	211, 2665, 2681
FokI	GGATG	5 cut(s)	47, 994, 2244, 2593, 2999
Fsp4HI	GCNGC	3 cut(s)	211, 2665, 2681
FspBI	CTAG	8 cut(s)	854, 921, 1023, 1655, 1794, 2096, 2453, 2481
GluI	GCNGC	3 cut(s)	211, 2665, 2681
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	2907
HaeIII	GGCC	9 cut(s)	323, 417, 666, 1001, 1082, 1835, 2544, 2667, 2812
HapII	CCGG	3 cut(s)	821, 890, 1474
Hin1II	CATG	9 cut(s)	168, 264, 677, 1384, 2192, 2331, 2623, 2937, 3071
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HindIII	AAGCTT	5 cut(s)	155, 368, 697, 1061, 2110
HpaII	CCGG	3 cut(s)	821, 890, 1474
HphI	GGTGA	3 cut(s)	1452, 1826, 2312
Hpy166II	GTNNAC	4 cut(s)	73, 639, 1799, 3073
Hpy8I	GTNNAC	4 cut(s)	73, 639, 1799, 3073
Hpy99I	CGWCG	1 cut(s)	2957
HpyAV	CCTTC	7 cut(s)	777, 1238, 1292, 2024, 2733, 2794, 3057
HpyCH4III	ACNGT	5 cut(s)	49, 725, 777, 1070, 2291
HpyCH4IV	ACGT	2 cut(s)	1215, 3097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 2396
HpySE526I	ACGT	2 cut(s)	1215, 3097
Hsp92II	CATG	9 cut(s)	168, 264, 677, 1384, 2192, 2331, 2623, 2937, 3071
Kpn2I	TCCGGA	1 cut(s)	1473
LmnI	GCTCC	7 cut(s)	114, 597, 737, 953, 1666, 2260, 2387
Lsp1109I	GCAGC	2 cut(s)	222, 2692
LweI	GCATC	2 cut(s)	2140, 2416
MabI	ACCWGGT	2 cut(s)	2252, 2308
MaeI	CTAG	8 cut(s)	854, 921, 1023, 1655, 1794, 2096, 2453, 2481
MaeII	ACGT	2 cut(s)	1215, 3097
MaeIII	GTNAC	9 cut(s)	725, 966, 1376, 1388, 1856, 2431, 2615, 2792, 2958
MbiI	CCGCTC	1 cut(s)	2664
MfeI	CAATTG	7 cut(s)	360, 986, 1175, 1594, 1803, 2101, 2546
MflI	RGATCY	6 cut(s)	839, 928, 1147, 2006, 2461, 2742
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	2 cut(s)	417, 1082
MluNI	TGGCCA	2 cut(s)	417, 1082
MlyI	GAGTC	5 cut(s)	721, 887, 891, 1951, 2642
MmeI	TCCRAC	5 cut(s)	211, 316, 1035, 2232, 2238
Mox20I	TGGCCA	2 cut(s)	417, 1082
MroI	TCCGGA	1 cut(s)	1473
MroXI	GAANNNNTTC	1 cut(s)	1514
MscI	TGGCCA	2 cut(s)	417, 1082
Msp20I	TGGCCA	2 cut(s)	417, 1082
MspA1I	CMGCKG	2 cut(s)	246, 581
MspI	CCGG	3 cut(s)	821, 890, 1474
MspR9I	CCNGG	2 cut(s)	2254, 2310
MunI	CAATTG	7 cut(s)	360, 986, 1175, 1594, 1803, 2101, 2546
MvaI	CCWGG	2 cut(s)	2254, 2310
MwoI	GCNNNNNNNGC	2 cut(s)	183, 2396
NlaIII	CATG	9 cut(s)	168, 264, 677, 1384, 2192, 2331, 2623, 2937, 3071
NlaIV	GGNNCC	6 cut(s)	599, 814, 2224, 2251, 2744, 2811
NmeAIII	GCCGAG	1 cut(s)	3013
NmuCI	GTSAC	2 cut(s)	966, 2958
NspI	RCATGY	3 cut(s)	2192, 2937, 3071
PagI	TCATGA	1 cut(s)	673
PaqCI	CACCTGC	1 cut(s)	2381
PciI	ACATGT	1 cut(s)	2933
PdmI	GAANNNNTTC	1 cut(s)	1514
PfeI	GAWTC	8 cut(s)	137, 146, 677, 1576, 1702, 1726, 1938, 2133
PflFI	GACNNNGTC	1 cut(s)	643
PflMI	CCANNNNNTGG	1 cut(s)	836
PkrI	GCNGC	3 cut(s)	212, 2666, 2682
Ple19I	CGATCG	1 cut(s)	340
PleI	GAGTC	5 cut(s)	720, 887, 890, 1951, 2641
PpsI	GAGTC	5 cut(s)	720, 887, 890, 1951, 2641
PscI	ACATGT	1 cut(s)	2933
Psp6I	CCWGG	2 cut(s)	2252, 2308
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	2 cut(s)	2252, 2308
PspN4I	GGNNCC	6 cut(s)	599, 814, 2224, 2251, 2744, 2811
PspPI	GGNCC	4 cut(s)	665, 1558, 2222, 2810
PsrI	GAACNNNNNNTAC	2 cut(s)	2545, 2577
PstI	CTGCAG	1 cut(s)	1140
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	6 cut(s)	839, 928, 1147, 2006, 2461, 2742
PsyI	GACNNNGTC	1 cut(s)	643
PvuI	CGATCG	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	5 cut(s)	1205, 1218, 1687, 2314, 2708
RsaNI	GTAC	5 cut(s)	1204, 1217, 1686, 2313, 2707
SatI	GCNGC	3 cut(s)	211, 2665, 2681
Sau96I	GGNCC	4 cut(s)	665, 1558, 2222, 2810
SchI	GAGTC	5 cut(s)	721, 887, 891, 1951, 2642
ScrFI	CCNGG	2 cut(s)	2254, 2310
SduI	GDGCHC	1 cut(s)	179
SexAI	ACCWGGT	2 cut(s)	2252, 2308
SfaNI	GCATC	2 cut(s)	2140, 2416
SfcI	CTRYAG	2 cut(s)	773, 1136
SinI	GGWCC	2 cut(s)	1558, 2222
SmlI	CTYRAG	4 cut(s)	500, 709, 1312, 2869
SmoI	CTYRAG	4 cut(s)	500, 709, 1312, 2869
SsiI	CCGC	4 cut(s)	66, 246, 2664, 2678
SspI	AATATT	1 cut(s)	1290
SspMI	CTAG	8 cut(s)	854, 921, 1023, 1655, 1794, 2096, 2453, 2481
StyD4I	CCNGG	2 cut(s)	2252, 2308
StyI	CCWWGG	3 cut(s)	1554, 2128, 2532
TaaI	ACNGT	5 cut(s)	49, 725, 777, 1070, 2291
TaiI	ACGT	2 cut(s)	1218, 3100
TaqI	TCGA	8 cut(s)	173, 298, 336, 1074, 1636, 2492, 2765, 2787
TatI	WGTACW	1 cut(s)	1685
TauI	GCSGC	1 cut(s)	2667
TfiI	GAWTC	8 cut(s)	137, 146, 677, 1576, 1702, 1726, 1938, 2133
TscAI	CASTG	6 cut(s)	52, 975, 1140, 1955, 2524, 2920
TseFI	GTSAC	2 cut(s)	966, 2958
TseI	GCWGC	2 cut(s)	210, 2680
Tsp45I	GTSAC	2 cut(s)	966, 2958
TspDTI	ATGAA	5 cut(s)	662, 690, 1715, 1810, 2405
TspGWI	ACGGA	1 cut(s)	2474
TspRI	CASTG	6 cut(s)	52, 975, 1140, 1955, 2524, 2920
Tth111I	GACNNNGTC	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	1558, 2222
XbaI	TCTAGA	3 cut(s)	920, 1654, 2452
XceI	RCATGY	3 cut(s)	2192, 2937, 3071
XmiI	GTMKAC	1 cut(s)	1798
XmnI	GAANNNNTTC	1 cut(s)	1514
XspI	CTAG	8 cut(s)	854, 921, 1023, 1655, 1794, 2096, 2453, 2481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.