Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

12129042 .. 12129456

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGACATGCACATTCACATGTCGTATTGCACCCCAAAAGGGTTCAAGACCTTGGCTTCAAACTACCTCGGCATTCAGGACACCAGCGAACATCGCCTGTGTGGAGAAATTGAAGCATTGGTGGAAAGCACTAACATCACCCCTGCAGAGGTTTGTGAGGAGCTTATGAGGGGTGGGGGTGATGGTGATGAAGCCGATGCTGCTCTTGAAGGACTTGTCAATTGTCTCAAGCGTAAGAGGCTCGAGACCAACAAGATAGAGGATGAAGAGGTTGGGAAAGCAAAGAGGCAGAAAACAGATTATAATGCATCTGAAATTTCCGAAAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

4.76

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	10 - 83	1.5e-21	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	39, 148, 327
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	4 cut(s)	46, 60, 113, 209
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	230, 239
Ama87I	CYCGRG	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	130, 191, 197
AvaI	CYCGRG	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	230, 239
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	187, 317
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	51, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 148, 327
BseDI	CCNNGG	2 cut(s)	51, 67
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	39, 148, 327
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	39, 148, 327
BsmAI	GTCTC	2 cut(s)	230, 239
BsmI	GAATGC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	51, 67
BssT1I	CCWWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	230, 239
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 200, 238
BstNSI	RCATGY	2 cut(s)	10, 22
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	268
CviAII	CATG	2 cut(s)	7, 19
CviJI	RGCY	4 cut(s)	56, 163, 194, 241
CviKI_1	RGCY	4 cut(s)	56, 163, 194, 241
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	10, 22
FaiI	YATR	4 cut(s)	8, 20, 167, 303
FatI	CATG	2 cut(s)	6, 18
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	10, 22
HphI	GGTGA	3 cut(s)	130, 191, 197
Hpy188I	TCNGA	2 cut(s)	313, 322
Hpy188III	TCNNGA	4 cut(s)	46, 77, 206, 244
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	10, 30, 146, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 200, 238
Hsp92II	CATG	2 cut(s)	10, 22
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	62, 97, 110, 156
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	2 cut(s)	187, 317
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	1 cut(s)	220
MluCI	AATT	4 cut(s)	108, 220, 315, 325
MnlI	CCTC	8 cut(s)	77, 142, 151, 162, 231, 253, 262, 279
Mph1103I	ATGCAT	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	220
Mva1269I	GAATGC	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	93, 200, 238
NlaIII	CATG	2 cut(s)	10, 22
NmeAIII	GCCGAG	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	10, 22
PaeR7I	CTCGAG	1 cut(s)	242
PciI	ACATGT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	202
PscI	ACATGT	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	201
SetI	ASST	5 cut(s)	53, 69, 153, 165, 273
SfaNI	GCATC	2 cut(s)	187, 317
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	227, 242
SmoI	CTYRAG	2 cut(s)	227, 242
Sse9I	AATT	4 cut(s)	108, 220, 315, 325
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	108, 220, 315, 325
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	204, 279
XapI	RAATTY	1 cut(s)	315
XceI	RCATGY	2 cut(s)	10, 22
XhoI	CTCGAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.