Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Forward (+)

34202156 .. 34202844

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGAGCGTTATTCTCGTGTTAAAGATTTGTGGTGATGAAAGGATCATAGTGTTCACAACGAACCATAAGGATCGGCTTGACCTGGCATTGCTGCGTCCGGGCCGAATGGACATGCACATTAACATGTCCTATTGCACTGCAGGGGGTTTTAACATATTGGCCTCGAACTATCTTGGCATTCATCACAGCAACCGTCACAGGCTTTGTGGTGGAATTGAAGGACTAATTGAGAGTAGTGAGTTCACTCCTGCAGAGGTTGCTGAGGAGCTATTGAGGATCGATAATGCCGATGTTGCTCTTGAAGGACTAGTGAGTTTGCTCAAGGGAAAGAAAGTTGAGAGAAATGAAGCAAAGGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGATAACAAAGTTGAGATTCAAGATGTAAAGAGGCAGAAAACTGAGTCAAATGTCAATGGTGACAATCAAAACATGTTGCAGCTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

158

Amino Acids

17.26

Weight (kDa)

5.54

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	46 - 119	2.5e-17	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	53, 81, 287
AflIII	ACRYGT	2 cut(s)	126, 459
AgsI	TTSAA	3 cut(s)	221, 305, 407
AhlI	ACTAGT	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	271, 469
AluI	AGCT	2 cut(s)	271, 469
AlwI	GGATC	3 cut(s)	53, 81, 287
AoxI	GGCC	2 cut(s)	103, 162
ApeKI	GCWGC	2 cut(s)	94, 466
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	16, 47, 458
BauI	CACGAG	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	102
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	2 cut(s)	141, 252
BisI	GCNGC	2 cut(s)	95, 467
BlsI	GCNGC	2 cut(s)	96, 468
Bme1390I	CCNGG	2 cut(s)	86, 102
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	86, 102
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	255, 420
BseRI	GAGGAG	2 cut(s)	281, 374
BseXI	GCAGC	1 cut(s)	81
BshFI	GGCC	2 cut(s)	105, 164
BshVI	ATCGAT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	105, 164
Bsp143I	GATC	3 cut(s)	45, 73, 279
BspANI	GGCC	2 cut(s)	105, 164
BspCNI	CTCAG	2 cut(s)	256, 421
BspDI	ATCGAT	1 cut(s)	282
BspMAI	CTGCAG	2 cut(s)	145, 256
BspPI	GGATC	3 cut(s)	53, 81, 287
BsrDI	GCAATG	1 cut(s)	89
BssMI	GATC	3 cut(s)	45, 73, 279
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	264, 429
BstKTI	GATC	3 cut(s)	48, 76, 282
BstMBI	GATC	3 cut(s)	45, 73, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 296
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	3 cut(s)	118, 130, 463
BstSCI	CCNGG	2 cut(s)	84, 100
BstSFI	CTRYAG	2 cut(s)	141, 252
BstV1I	GCAGC	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	105, 164
BsuTUI	ATCGAT	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	86
CviAII	CATG	3 cut(s)	115, 127, 460
CviJI	RGCY	6 cut(s)	79, 105, 164, 205, 271, 469
CviKI_1	RGCY	6 cut(s)	79, 105, 164, 205, 271, 469
DdeI	CTNAG	2 cut(s)	264, 429
DpnI	GATC	3 cut(s)	47, 75, 281
DpnII	GATC	3 cut(s)	45, 73, 279
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	118, 130, 463
FaiI	YATR	6 cut(s)	50, 69, 116, 128, 158, 461
FatI	CATG	3 cut(s)	114, 126, 459
Fnu4HI	GCNGC	2 cut(s)	95, 467
Fsp4HI	GCNGC	2 cut(s)	95, 467
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	95, 467
HaeIII	GGCC	2 cut(s)	105, 164
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	118, 130, 463
HinfI	GANTC	2 cut(s)	403, 431
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	16, 47, 458
Hpy166II	GTNNAC	2 cut(s)	57, 246
Hpy188III	TCNNGA	2 cut(s)	302, 407
Hpy8I	GTNNAC	2 cut(s)	57, 246
HpyAV	CCTTC	2 cut(s)	215, 299
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	5 cut(s)	118, 138, 143, 254, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 296
HpyF3I	CTNAG	2 cut(s)	264, 429
Hsp92II	CATG	3 cut(s)	118, 130, 463
Kzo9I	GATC	3 cut(s)	45, 73, 279
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	6 cut(s)	71, 98, 114, 129, 187, 264
Lsp1109I	GCAGC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	197, 446
MalI	GATC	3 cut(s)	47, 75, 281
MboI	GATC	3 cut(s)	45, 73, 279
MluCI	AATT	3 cut(s)	216, 228, 472
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	7 cut(s)	175, 250, 259, 270, 352, 355, 411
MseI	TTAA	4 cut(s)	23, 123, 153, 475
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	86, 102
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	260, 296
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	45, 73, 279
NlaIII	CATG	3 cut(s)	118, 130, 463
NmuCI	GTSAC	2 cut(s)	197, 446
NspI	RCATGY	3 cut(s)	118, 130, 463
PciI	ACATGT	2 cut(s)	126, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	96, 468
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	2 cut(s)	126, 459
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	2 cut(s)	145, 256
PvuII	CAGCTG	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	23, 123, 153, 475
SatI	GCNGC	2 cut(s)	95, 467
Sau3AI	GATC	3 cut(s)	45, 73, 279
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	86, 102
SetI	ASST	4 cut(s)	87, 261, 273, 471
SfcI	CTRYAG	2 cut(s)	141, 252
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	3 cut(s)	216, 228, 472
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	84, 100
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	167, 282
TasI	AATT	3 cut(s)	216, 228, 472
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	4 cut(s)	23, 123, 153, 475
Tru9I	TTAA	4 cut(s)	23, 123, 153, 475
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	197, 446
TseI	GCWGC	2 cut(s)	94, 466
Tsp45I	GTSAC	2 cut(s)	197, 446
TspDTI	ATGAA	3 cut(s)	54, 173, 363
TspRI	CASTG	1 cut(s)	145
XceI	RCATGY	3 cut(s)	118, 130, 463
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.