Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

11586788 .. 11587260

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGATGTACGCATTCACATGTCGTATTGCACCCCAAGAGGGTTCAAGACCTTAGCCTCGAACTACCTCGGCATTCAGGACACCAGCGAACATCGCCTGTGTGGAGAAATTGAAGCATTGATGGAGAACACAAACATCACCCCTGCAGAGGTTTGTGAGGAGCTTATGAGGGGTGATGGTGATGATGCTGATGCTGCTCTTGAAGGACTTGTCAATTGCCTCAAGTGTAAGAGGCTCGAGACCAAAAAAAATAGAGGAAGAAGAAATAGGGAAAGCAAAGAGGCAGAAAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

5.71

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	10 - 82	5e-23	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	39, 148
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	46, 113, 203
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	130, 185, 191
AvaI	CYCGRG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	115, 170
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	175, 181
Bpu10I	CCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 148
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	39, 148
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	39, 148
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	12, 72
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	236
BspMAI	CTGCAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 194
BstNSI	RCATGY	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	3 cut(s)	56, 163, 235
CviKI_1	RGCY	3 cut(s)	56, 163, 235
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	236
FaeI	CATG	1 cut(s)	22
FaiI	YATR	2 cut(s)	20, 167
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	130, 185, 191
Hpy188III	TCNNGA	4 cut(s)	46, 77, 200, 238
HpyAV	CCTTC	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	30, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 194
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	62, 97, 110, 156
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	175, 181
MboII	GAAGA	2 cut(s)	270, 273
MfeI	CAATTG	1 cut(s)	214
MluCI	AATT	2 cut(s)	108, 214
MslI	CAYNNNNRTG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	214
Mva1269I	GAATGC	2 cut(s)	12, 72
MwoI	GCNNNNNNNGC	2 cut(s)	93, 194
NlaIII	CATG	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	48
NspI	RCATGY	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	18
PctI	GAATGC	2 cut(s)	12, 72
PkrI	GCNGC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	195
SetI	ASST	4 cut(s)	53, 69, 153, 165
SfaNI	GCATC	2 cut(s)	175, 181
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	221, 236
SmoI	CTYRAG	2 cut(s)	221, 236
Sse9I	AATT	2 cut(s)	108, 214
TaqI	TCGA	2 cut(s)	59, 237
TasI	AATT	2 cut(s)	108, 214
TseI	GCWGC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.