Rh2CG137400

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009643
Physical Location & Seq
Reverse (-)
12139325 .. 12139852
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG137400.1

Sequence Viewer

Length: 321 bp
ATGTCTACTACGAATCGTTCTATTGTGGTGTTTGAGGATATTGATTGCAGCAAGGAATCCGTAAACCGGGAATCAGCAGAGAGCAAGAACTTTATGGTTTCCAAAGCCGAATCCAAGTTTACACTCTCGGGTCTGCTGAATGTCGTTGATGGTCTGTGGTCAAGTTGCGGTGATGAGAGAATTATTGTCTTCACCACCAACCACAAGGAGCGGCTAGAACCTGCATTGTTGAGGCCTGGTCGAATGGATGTACGCATTCACATGTCGTATTGCACCCCAAGAGGGTTCAAGACCTTAGCCTCGAACTACCTCGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

7.73

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 5 - 89 2.4e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 168, 211
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 66, 282
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 182, 184
AvaI CYCGRG 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 68
BfaI CTAG 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 49, 212
BlsI GCNGC 2 cut(s) 50, 213
Bme1390I CCNGG 2 cut(s) 68, 237
BmeT110I CYCGRG 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 68, 237
BpiI GAAGAC 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 282
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 66, 282
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 66, 282
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 127
BspACI CCGC 2 cut(s) 168, 211
BspANI GGCC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 229
BsrBI CCGCTC 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 253
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 66, 235
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 107, 214, 235, 299
CviKI_1 RGCY 4 cut(s) 107, 214, 235, 299
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 265
FaiI YATR 2 cut(s) 95, 263
FatI CATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 49, 212
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 49, 212
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 49, 212
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 67
Hin1II CATG 1 cut(s) 265
HinfI GANTC 4 cut(s) 13, 56, 71, 110
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 182, 184
Hpy166II GTNNAC 3 cut(s) 6, 64, 120
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 3 cut(s) 6, 64, 120
HpyCH4V TGCA 3 cut(s) 48, 224, 273
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 1 cut(s) 265
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 4 cut(s) 80, 222, 234, 249
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 1 cut(s) 215
MbiI CCGCTC 1 cut(s) 211
MboII GAAGA 1 cut(s) 181
MluCI AATT 1 cut(s) 180
MnlI CCTC 5 cut(s) 28, 225, 275, 310, 320
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 68, 237
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 1 cut(s) 237
NciI CCSGG 1 cut(s) 68
NlaIII CATG 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 291
NspI RCATGY 1 cut(s) 265
PceI AGGCCT 1 cut(s) 235
PciI ACATGT 1 cut(s) 261
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 13, 56, 71, 110
PkrI GCNGC 2 cut(s) 50, 213
PscI ACATGT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 2 cut(s) 49, 212
ScrFI CCNGG 2 cut(s) 68, 237
SetI ASST 3 cut(s) 223, 296, 312
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 2 cut(s) 168, 211
SspMI CTAG 1 cut(s) 215
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 66, 235
TaqI TCGA 2 cut(s) 241, 302
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 4 cut(s) 13, 56, 71, 110
TseI GCWGC 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 49
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.