Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009643

Physical Location & Seq

Genomic Coordinates Reverse (-)

7007726 .. 7008321

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTCATGGGGAGTAGATACAATAGACCACCTGATATGAAGTTTACACTCTCAGGCCTACTCAATGTCATTGATGGTCTGTGGTCATGTGTTGGAGATGAAAGAATTATCATCTTCACTACTAACCACAAGGATCGGCTAGACCCTGCATTGTTGAGACCTGGACGTATGGATGTGCACATTCACATGTCCTATTGTACTCCAAGCGGGTTCAGGATCTTGGCCTCTAACTACCTTGGCATTCATGAGAACAACCCTCATCACCTCTGCGGAGAAGTTGAAGGGTTGATACAGAGCACAGAGGTGACCCCTGCCCAGGTTGCTGAGGAGCTTATGAAGAGTGATGATGCTGATGTTGCTCTTGAAGGGATTGTTAATTTTCTCAAATGCAAGATAGAGGCTGATAGCAAGAAAACAGAGGATGAAGGGACTAAGGAAGCAGAGACTTTCGAAGAAGAGTCGGATTCTGGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

4.75

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	12 - 64	3e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	66 - 138	6.8e-22	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009643)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12711 FvH4_1g12720
rosa_chinensis	RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061
rosa_laevigata	RLG00000017009
rosa_multiflora	Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002
rosa_roxburghii	Rroxscaffold_2G00141870
rosa_rugosa	Rorug01G0384800 Rorug02G0092600 Rorug03G0230400
rosa_samantha	Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900
rosa_wichuraiana	Rw2G010290 Rw2G010980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 270
AclWI	GGATC	2 cut(s)	141, 224
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	281, 365
AjnI	CCWGG	2 cut(s)	160, 315
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	2 cut(s)	180, 299
Alw26I	GTCTC	2 cut(s)	151, 437
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	141, 224
AoxI	GGCC	2 cut(s)	55, 222
ApaLI	GTGCAC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	254, 316
AsuII	TTCGAA	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
Bbv12I	GWGCWC	2 cut(s)	180, 299
BbvCI	CCTCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	162, 317
BcoDI	GTCTC	2 cut(s)	151, 437
BfaI	CTAG	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	162, 317
BmrFI	CCNGG	2 cut(s)	162, 317
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	235, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	162, 317
BseDI	CCNNGG	2 cut(s)	235, 315
BseGI	GGATG	2 cut(s)	178, 427
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	66, 315
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	57, 224
BsiHKAI	GWGCWC	2 cut(s)	180, 299
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	151, 437
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	57, 224
Bso31I	GGTCTC	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	180, 299
Bsp143I	GATC	2 cut(s)	133, 216
BspACI	CCGC	2 cut(s)	207, 270
BspANI	GGCC	2 cut(s)	57, 224
BspCNI	CTCAG	2 cut(s)	65, 316
BspHI	TCATGA	1 cut(s)	244
BspPI	GGATC	2 cut(s)	141, 224
BspT104I	TTCGAA	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	235, 315
BssMI	GATC	2 cut(s)	133, 216
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	162, 317
Bst6I	CTCTTC	2 cut(s)	332, 450
BstBI	TTCGAA	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	52, 324, 432
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	178, 427
BstKTI	GATC	2 cut(s)	136, 219
BstMAI	GTCTC	2 cut(s)	151, 437
BstMBI	GATC	2 cut(s)	133, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 356
BstNI	CCWGG	2 cut(s)	162, 317
BstNSI	RCATGY	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	160, 315
BstSLI	GKGCMC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	57, 224
BtsCI	GGATG	2 cut(s)	178, 427
CciI	TCATGA	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	4 cut(s)	7, 87, 187, 245
CviJI	RGCY	5 cut(s)	57, 139, 224, 331, 401
CviKI_1	RGCY	5 cut(s)	57, 139, 224, 331, 401
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	3 cut(s)	52, 324, 432
DpnI	GATC	2 cut(s)	135, 218
DpnII	GATC	2 cut(s)	133, 216
Eam1104I	CTCTTC	2 cut(s)	332, 450
EarI	CTCTTC	2 cut(s)	332, 450
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	151
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	160, 315
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	4 cut(s)	10, 90, 190, 248
FaiI	YATR	7 cut(s)	8, 38, 88, 170, 188, 246, 335
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	4 cut(s)	6, 86, 186, 244
FauI	CCCGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	185, 434
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	57, 224
Hin1II	CATG	4 cut(s)	10, 90, 190, 248
HinfI	GANTC	2 cut(s)	458, 464
HphI	GGTGA	2 cut(s)	254, 316
Hpy166II	GTNNAC	2 cut(s)	45, 178
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	4 cut(s)	214, 245, 362, 468
Hpy8I	GTNNAC	2 cut(s)	45, 178
HpyAV	CCTTC	3 cut(s)	275, 359, 419
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	149, 178, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 356
HpyF3I	CTNAG	3 cut(s)	52, 324, 432
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	10, 90, 190, 248
Kzo9I	GATC	2 cut(s)	133, 216
LmnI	GCTCC	1 cut(s)	328
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	135, 218
MboI	GATC	2 cut(s)	133, 216
MboII	GAAGA	4 cut(s)	106, 349, 464, 467
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	180, 299
MluCI	AATT	2 cut(s)	105, 376
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	73, 441
MnlI	CCTC	7 cut(s)	235, 267, 275, 295, 319, 391, 412
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	2 cut(s)	185, 302
MspR9I	CCNGG	2 cut(s)	162, 317
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	162, 317
MwoI	GCNNNNNNNGC	2 cut(s)	320, 356
NdeII	GATC	2 cut(s)	133, 216
NlaIII	CATG	4 cut(s)	10, 90, 190, 248
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	450
OliI	CACNNNNGTG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	57
PciI	ACATGT	1 cut(s)	186
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	160, 315
PspEI	GGTNACC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	160, 315
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	2 cut(s)	185, 302
SaqAI	TTAA	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	133, 216
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	2 cut(s)	162, 317
SduI	GDGCHC	2 cut(s)	180, 299
SetI	ASST	8 cut(s)	34, 163, 169, 237, 267, 306, 321, 333
SfaNI	GCATC	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	185, 302
Sse9I	AATT	2 cut(s)	105, 376
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	2 cut(s)	207, 270
SspMI	CTAG	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	160, 315
StyI	CCWWGG	1 cut(s)	235
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	105, 376
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	53, 114, 233, 350, 438
VneI	GTGCAC	1 cut(s)	176
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.