respiratory chain complex III assembly
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12711 FvH4_1g12720 |
| rosa_chinensis | RchiOBHm_Chr2g0099821 RchiOBHm_Chr2g0100781 RchiOBHm_Chr3g0487061 |
| rosa_laevigata | RLG00000017009 |
| rosa_multiflora | Rmu_co8259069.1_g000001 Rmu_sc0001659.1_g000016 Rmu_sc0028022.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00141870 |
| rosa_rugosa | Rorug01G0384800 Rorug02G0092600 Rorug03G0230400 |
| rosa_samantha | Rh2BG135800 Rh2CG137200 Rh2CG137400 Rh2CG146200 Rh2DG137800 Rh2DG145700 Rh3DG309900 |
| rosa_wichuraiana | Rw2G010290 Rw2G010980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 211 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 2 cut(s) | 168, 211 |
| AfaI | GTAC | 1 cut(s) | 252 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 282, 391, 564 |
| AflIII | ACRYGT | 1 cut(s) | 261 |
| AgsI | TTSAA | 3 cut(s) | 289, 356, 446 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AluBI | AGCT | 2 cut(s) | 107, 406 |
| AluI | AGCT | 2 cut(s) | 107, 406 |
| Alw26I | GTCTC | 1 cut(s) | 476 |
| Ama87I | CYCGRG | 2 cut(s) | 127, 479 |
| AoxI | GGCC | 1 cut(s) | 233 |
| ApeKI | GCWGC | 2 cut(s) | 48, 437 |
| AsuC2I | CCSGG | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 5 cut(s) | 182, 184, 373, 428, 434 |
| AvaI | CYCGRG | 2 cut(s) | 127, 479 |
| BbvI | GCAGC | 2 cut(s) | 60, 424 |
| BccI | CCATC | 3 cut(s) | 143, 358, 413 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BcnI | CCSGG | 1 cut(s) | 68 |
| BcoDI | GTCTC | 1 cut(s) | 476 |
| BfaI | CTAG | 1 cut(s) | 215 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BisI | GCNGC | 3 cut(s) | 49, 212, 438 |
| BlsI | GCNGC | 3 cut(s) | 50, 213, 439 |
| Bme1390I | CCNGG | 2 cut(s) | 68, 237 |
| BmeT110I | CYCGRG | 2 cut(s) | 127, 479 |
| BmrFI | CCNGG | 2 cut(s) | 68, 237 |
| BmsI | GCATC | 2 cut(s) | 418, 424 |
| BpuEI | CTTGAG | 1 cut(s) | 449 |
| BpuMI | CCSGG | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 1 cut(s) | 310 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 282, 391, 564 |
| Bse3DI | GCAATG | 1 cut(s) | 334 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseDI | CCNNGG | 1 cut(s) | 310 |
| BseGI | GGATG | 1 cut(s) | 253 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 282, 391, 564 |
| BseMI | GCAATG | 1 cut(s) | 334 |
| BseRI | GAGGAG | 1 cut(s) | 416 |
| BseXI | GCAGC | 2 cut(s) | 60, 424 |
| BshFI | GGCC | 1 cut(s) | 235 |
| BsiHKCI | CYCGRG | 2 cut(s) | 127, 479 |
| BsiSI | CCGG | 1 cut(s) | 67 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 282, 391, 564 |
| BsmAI | GTCTC | 1 cut(s) | 476 |
| BsmI | GAATGC | 1 cut(s) | 315 |
| BsnI | GGCC | 1 cut(s) | 235 |
| Bso31I | GGTCTC | 1 cut(s) | 476 |
| BsoBI | CYCGRG | 2 cut(s) | 127, 479 |
| Bsp1407I | TGTACA | 1 cut(s) | 250 |
| BspACI | CCGC | 2 cut(s) | 168, 211 |
| BspANI | GGCC | 1 cut(s) | 235 |
| BspMAI | CTGCAG | 1 cut(s) | 391 |
| BspTNI | GGTCTC | 1 cut(s) | 476 |
| BsrBI | CCGCTC | 1 cut(s) | 211 |
| BsrDI | GCAATG | 1 cut(s) | 334 |
| BsrGI | TGTACA | 1 cut(s) | 250 |
| BssECI | CCNNGG | 1 cut(s) | 310 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| BstAUI | TGTACA | 1 cut(s) | 250 |
| BstF5I | GGATG | 1 cut(s) | 253 |
| BstMAI | GTCTC | 1 cut(s) | 476 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 336, 437 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstNSI | RCATGY | 1 cut(s) | 265 |
| BstSCI | CCNGG | 2 cut(s) | 66, 235 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 2 cut(s) | 60, 424 |
| BsuRI | GGCC | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 253 |
| Csp6I | GTAC | 1 cut(s) | 251 |
| CviAII | CATG | 1 cut(s) | 262 |
| CviJI | RGCY | 5 cut(s) | 107, 214, 235, 406, 478 |
| CviKI_1 | RGCY | 5 cut(s) | 107, 214, 235, 406, 478 |
| CviQI | GTAC | 1 cut(s) | 251 |
| Eco147I | AGGCCT | 1 cut(s) | 235 |
| Eco31I | GGTCTC | 1 cut(s) | 476 |
| Eco88I | CYCGRG | 2 cut(s) | 127, 479 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| FaeI | CATG | 1 cut(s) | 265 |
| FaiI | YATR | 3 cut(s) | 263, 399, 410 |
| FatI | CATG | 1 cut(s) | 261 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 212, 438 |
| FokI | GGATG | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 212, 438 |
| FspBI | CTAG | 1 cut(s) | 215 |
| GluI | GCNGC | 3 cut(s) | 49, 212, 438 |
| HaeIII | GGCC | 1 cut(s) | 235 |
| HapII | CCGG | 1 cut(s) | 67 |
| Hin1II | CATG | 1 cut(s) | 265 |
| HinfI | GANTC | 5 cut(s) | 13, 56, 71, 110, 545 |
| HpaII | CCGG | 1 cut(s) | 67 |
| HphI | GGTGA | 5 cut(s) | 182, 184, 373, 428, 434 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 64, 120, 192, 253 |
| Hpy188I | TCNGA | 1 cut(s) | 559 |
| Hpy188III | TCNNGA | 4 cut(s) | 289, 320, 443, 481 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 64, 120, 192, 253 |
| HpyAV | CCTTC | 1 cut(s) | 440 |
| HpyCH4V | TGCA | 5 cut(s) | 48, 224, 273, 389, 551 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 336, 437 |
| Hsp92II | CATG | 1 cut(s) | 265 |
| LmnI | GCTCC | 2 cut(s) | 208, 403 |
| LpnPI | CCDG | 7 cut(s) | 80, 222, 234, 249, 305, 340, 399 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 424 |
| LweI | GCATC | 2 cut(s) | 418, 424 |
| MaeI | CTAG | 1 cut(s) | 215 |
| MbiI | CCGCTC | 1 cut(s) | 211 |
| MboII | GAAGA | 2 cut(s) | 512, 515 |
| MfeI | CAATTG | 1 cut(s) | 457 |
| MluCI | AATT | 5 cut(s) | 180, 351, 457, 552, 562 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MseI | TTAA | 1 cut(s) | 92 |
| MslI | CAYNNNNRTG | 1 cut(s) | 260 |
| MspI | CCGG | 1 cut(s) | 67 |
| MspR9I | CCNGG | 2 cut(s) | 68, 237 |
| MunI | CAATTG | 1 cut(s) | 457 |
| Mva1269I | GAATGC | 1 cut(s) | 315 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 336, 437 |
| NciI | CCSGG | 1 cut(s) | 68 |
| NlaIII | CATG | 1 cut(s) | 265 |
| NmeAIII | GCCGAG | 1 cut(s) | 291 |
| NspI | RCATGY | 1 cut(s) | 265 |
| PaeR7I | CTCGAG | 1 cut(s) | 479 |
| PceI | AGGCCT | 1 cut(s) | 235 |
| PciI | ACATGT | 1 cut(s) | 261 |
| PctI | GAATGC | 1 cut(s) | 315 |
| PfeI | GAWTC | 4 cut(s) | 13, 56, 71, 110 |
| PkrI | GCNGC | 3 cut(s) | 50, 213, 439 |
| PleI | GAGTC | 1 cut(s) | 553 |
| PpsI | GAGTC | 1 cut(s) | 553 |
| PscI | ACATGT | 1 cut(s) | 261 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| PstI | CTGCAG | 1 cut(s) | 391 |
| RsaI | GTAC | 1 cut(s) | 252 |
| RsaNI | GTAC | 1 cut(s) | 251 |
| RseI | CAYNNNNRTG | 1 cut(s) | 260 |
| SaqAI | TTAA | 1 cut(s) | 92 |
| SatI | GCNGC | 3 cut(s) | 49, 212, 438 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 2 cut(s) | 68, 237 |
| SetI | ASST | 5 cut(s) | 109, 296, 312, 396, 408 |
| SfaNI | GCATC | 2 cut(s) | 418, 424 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| Sfr274I | CTCGAG | 1 cut(s) | 479 |
| SlaI | CTCGAG | 1 cut(s) | 479 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 2 cut(s) | 464, 479 |
| SmoI | CTYRAG | 2 cut(s) | 464, 479 |
| Sse9I | AATT | 5 cut(s) | 180, 351, 457, 552, 562 |
| SseBI | AGGCCT | 1 cut(s) | 235 |
| SsiI | CCGC | 2 cut(s) | 168, 211 |
| SspMI | CTAG | 1 cut(s) | 215 |
| StuI | AGGCCT | 1 cut(s) | 235 |
| StyD4I | CCNGG | 2 cut(s) | 66, 235 |
| TaqI | TCGA | 3 cut(s) | 241, 302, 480 |
| TasI | AATT | 5 cut(s) | 180, 351, 457, 552, 562 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TauI | GCSGC | 1 cut(s) | 214 |
| TfiI | GAWTC | 4 cut(s) | 13, 56, 71, 110 |
| Tru1I | TTAA | 1 cut(s) | 92 |
| Tru9I | TTAA | 1 cut(s) | 92 |
| TseI | GCWGC | 2 cut(s) | 48, 437 |
| TspGWI | ACGGA | 1 cut(s) | 49 |
| XceI | RCATGY | 1 cut(s) | 265 |
| XhoI | CTCGAG | 1 cut(s) | 479 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XspI | CTAG | 1 cut(s) | 215 |