FvH4_1g14320

BEL1-like homeodomain protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
7970179 .. 7976915
6737 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14320.t3

Sequence Viewer

Length: 1377 bp
ATGGGAATAGCAACAGTACAACCACTCTCACCAATATTCTTCTCATCAAAGGGTACTCAGAATAATTCAATCTCAGTCTCGGAAAAGTACTCCAGTTCAGGTAACTCTATGTCCCAAGACTACCATCAAAGCATCTACAGCTTCCCCAATGGCTTTGAAAGATCAGCGATGACCACCCACCAAGAGCAGCAGCAGCAACAGCAGCACTTGGCCCAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGGTTCGAGCCACCTCCTCCGCCATTGGTCGGTGGGTTAGACGAGGAAGAATCCGGAGGACTCAATCCGGTGTATGAAACAGCCGGGATGTTATCAGAGATGTTCAATTATCCTGCAGGCGTCGCACCGCCTGCAGAACTGCTTGAACATCCGATGGCCGCCAGCTATCGGATGGCTCGGCCGCATCAGCATCAATCTGCTGCGGCCGAATGGTACGGAAGCAGACAGAACATGGTGGGCGGATTGGGTCCATTAGGGGATTCAAATAAGAATCAGAGTGGCCGTGACAACATAGCAGCTCATCAGCATCAGATTTCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCGTCTCCTCCACCTCACTCAACTTCTTCTTCTACTCTTCACATGTTGCTTCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGGGGAGGAGGAGGAGGAGGGGCTTTTGGTCAATTCTCATGGGTGAGTCCTGATAGTCATGGCCATGAAGGCGGTTCCACAACTGGTCCAGCACACCAACTAAACACCAGCAGCATTAACCCTAGTGATCACCACCAACAAGGTCTTTCATTATCTTTATCAACTTCATTGCAACACTTAGAGGCGGCCAAAGCCGAAGAACTGCGAATGGGAGACAATTCCGGATTATTGTACTACAACAATCCGGAAGGGTCATCCAGCAGTGCACATTTTAACCAGTACAAGAATCTCGTCGGTCATCAAAGCCAGCAGGTTCATGTCGGGTTCGGGTCGTCGTCTTTCGGGGTTGTGAATGTGTTGAGGAATTCAAAGTATGTCAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTAGGCCGACAGAGTAGCTCGGTAAACCCTAGCTCCAATCCAGCTGGCACCAGCGGCGGTGGCGCTTCTTCGTCTTCCTCAAAGGATGCTCCTCCGACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTACTGTCCATGCTTGATGAGGCATGTGGATCGAAGGTACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAA

Protein Analysis

459

Amino Acids

48.62

Weight (kDa)

6.86

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 357 - 492 1.3e-47 Associated with HOX
Homeobox_KN PF05920 562 - 601 6e-19 Homeobox KN domain
Homeodomain PF00046 569 - 601 1.6e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 1205
AccIII TCCGGA 4 cut(s) 222, 299, 935, 958
AclWI GGATC 3 cut(s) 214, 1283, 1339
AcoI YGGCCR 6 cut(s) 402, 425, 450, 526, 775, 900
AcsI RAATTY 1 cut(s) 1078
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 7 cut(s) 18, 55, 89, 461, 947, 995, 1341
AfiI CCNNNNNNNGG 4 cut(s) 275, 414, 710, 1272
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 7 cut(s) 69, 158, 352, 392, 510, 1083, 1147
AjnI CCWGG 1 cut(s) 703
AluBI AGCT 9 cut(s) 141, 235, 411, 545, 584, 598, 1176, 1191, 1202
AluI AGCT 9 cut(s) 141, 235, 411, 545, 584, 598, 1176, 1191, 1202
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 3 cut(s) 82, 636, 921
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 3 cut(s) 214, 1283, 1339
AlwNI CAGNNNCTG 2 cut(s) 587, 1268
Aor13HI TCCGGA 4 cut(s) 222, 299, 935, 958
AoxI GGCC 9 cut(s) 210, 402, 425, 450, 526, 775, 900, 1095, 1162
ApaLI GTGCAC 1 cut(s) 978
ApoI RAATTY 1 cut(s) 1078
AseI ATTAAT 1 cut(s) 570
AspLEI GCGC 1 cut(s) 1223
AspS9I GGNCC 3 cut(s) 211, 494, 800
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 3 cut(s) 21, 769, 836
AvaII GGWCC 2 cut(s) 494, 800
BaeGI GKGCMC 1 cut(s) 982
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 1224
Bbv12I GWGCWC 1 cut(s) 982
BbvCI CCTCAGC 1 cut(s) 236
BccI CCATC 3 cut(s) 132, 394, 412
BceAI ACGGC 2 cut(s) 513, 613
BcgI CGANNNNNNTGC 2 cut(s) 1314, 1348
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 3 cut(s) 82, 636, 921
BfaI CTAG 2 cut(s) 837, 1188
BfmI CTRYAG 3 cut(s) 136, 360, 378
BfoI RGCGCY 1 cut(s) 1224
BfuAI ACCTGC 1 cut(s) 1015
BglI GCCNNNNNGGC 1 cut(s) 783
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 331, 705
Bme18I GGWCC 2 cut(s) 494, 800
BmgT120I GGNCC 3 cut(s) 211, 494, 800
BmiI GGNNCC 3 cut(s) 495, 790, 1207
BmrFI CCNGG 2 cut(s) 331, 705
BmsI GCATC 5 cut(s) 141, 439, 445, 562, 1234
BpiI GAAGAC 1 cut(s) 1224
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 704
BsaWI WCCGGW 5 cut(s) 222, 299, 313, 935, 958
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 414, 710, 1272
Bse1I ACTGG 3 cut(s) 93, 802, 991
Bse3DI GCAATG 1 cut(s) 881
BseAI TCCGGA 4 cut(s) 222, 299, 935, 958
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 6 cut(s) 339, 394, 423, 689, 968, 1249
BseLI CCNNNNNNNGG 4 cut(s) 275, 414, 710, 1272
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 3 cut(s) 71, 87, 227
BseNI ACTGG 3 cut(s) 93, 802, 991
BseRI GAGGAG 7 cut(s) 252, 624, 735, 738, 741, 744, 1239
BseSI GKGCMC 1 cut(s) 982
BseX3I CGGCCG 2 cut(s) 425, 450
BseYI CCCAGC 1 cut(s) 213
Bsh1285I CGRYCG 2 cut(s) 428, 453
BshFI GGCC 9 cut(s) 212, 404, 427, 452, 528, 777, 902, 1097, 1164
BshNI GGYRCC 1 cut(s) 1205
BsiEI CGRYCG 2 cut(s) 428, 453
BsiHKAI GWGCWC 1 cut(s) 982
BsiSI CCGG 6 cut(s) 223, 300, 314, 330, 936, 959
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 4 cut(s) 275, 414, 710, 1272
BsmAI GTCTC 3 cut(s) 82, 636, 921
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 9 cut(s) 212, 404, 427, 452, 528, 777, 902, 1097, 1164
Bsp1286I GDGCHC 1 cut(s) 982
Bsp13I TCCGGA 4 cut(s) 222, 299, 935, 958
Bsp143I GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
BspANI GGCC 9 cut(s) 212, 404, 427, 452, 528, 777, 902, 1097, 1164
BspCNI CTCAG 3 cut(s) 70, 86, 228
BspEI TCCGGA 4 cut(s) 222, 299, 935, 958
BspLI GGNNCC 3 cut(s) 495, 790, 1207
BspMAI CTGCAG 2 cut(s) 364, 382
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 3 cut(s) 214, 1283, 1339
BspT107I GGYRCC 1 cut(s) 1205
BsrDI GCAATG 1 cut(s) 881
BsrI ACTGG 3 cut(s) 93, 802, 991
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
BssNI GRCGYC 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 16, 1308
Bst6I CTCTTC 2 cut(s) 669, 1110
BstACI GRCGYC 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 6 cut(s) 364, 378, 409, 1022, 1204, 1356
BstDEI CTNAG 4 cut(s) 57, 73, 236, 892
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 6 cut(s) 339, 394, 423, 689, 968, 1249
BstH2I RGCGCY 1 cut(s) 1224
BstHHI GCGC 1 cut(s) 1223
BstKTI GATC 6 cut(s) 164, 222, 626, 844, 1278, 1334
BstMAI GTCTC 3 cut(s) 82, 636, 921
BstMBI GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
BstMCI CGRYCG 2 cut(s) 428, 453
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 2 cut(s) 673, 1329
BstSCI CCNGG 2 cut(s) 329, 703
BstSFI CTRYAG 3 cut(s) 136, 360, 378
BstSLI GKGCMC 1 cut(s) 982
BstV2I GAAGAC 1 cut(s) 1224
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BstZI CGGCCG 2 cut(s) 425, 450
BsuRI GGCC 9 cut(s) 212, 404, 427, 452, 528, 777, 902, 1097, 1164
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 6 cut(s) 339, 394, 423, 689, 968, 1249
BtsI GCAGTG 2 cut(s) 982, 1132
BtsIMutI CAGTG 2 cut(s) 982, 1132
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 6 cut(s) 364, 378, 409, 1022, 1204, 1356
CaiI CAGNNNCTG 2 cut(s) 587, 1268
CfoI GCGC 1 cut(s) 1223
Cfr13I GGNCC 3 cut(s) 211, 494, 800
CseI GACGC 1 cut(s) 355
Csp6I GTAC 7 cut(s) 17, 54, 88, 460, 946, 994, 1340
CviAII CATG 9 cut(s) 478, 592, 670, 753, 773, 779, 1031, 1312, 1326
CviQI GTAC 7 cut(s) 17, 54, 88, 460, 946, 994, 1340
DdeI CTNAG 4 cut(s) 57, 73, 236, 892
DpnI GATC 6 cut(s) 163, 221, 625, 843, 1277, 1333
DpnII GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
EaeI YGGCCR 6 cut(s) 402, 425, 450, 526, 775, 900
EagI CGGCCG 2 cut(s) 425, 450
Eam1104I CTCTTC 2 cut(s) 669, 1110
EarI CTCTTC 2 cut(s) 669, 1110
EciI GGCGGA 2 cut(s) 255, 501
EclXI CGGCCG 2 cut(s) 425, 450
Eco47I GGWCC 2 cut(s) 494, 800
Eco52I CGGCCG 2 cut(s) 425, 450
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 9 cut(s) 481, 595, 673, 756, 776, 782, 1034, 1315, 1329
FaqI GGGAC 1 cut(s) 97
FatI CATG 9 cut(s) 477, 591, 669, 752, 772, 778, 1030, 1311, 1325
FbaI TGATCA 1 cut(s) 841
FokI GGATG 6 cut(s) 346, 381, 430, 676, 955, 1256
FspBI CTAG 2 cut(s) 837, 1188
GlaI GCGC 1 cut(s) 1222
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 1224
HaeIII GGCC 9 cut(s) 212, 404, 427, 452, 528, 777, 902, 1097, 1164
HapII CCGG 6 cut(s) 223, 300, 314, 330, 936, 959
HgaI GACGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 1223
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 9 cut(s) 481, 595, 673, 756, 776, 782, 1034, 1315, 1329
Hin6I GCGC 1 cut(s) 1221
HinP1I GCGC 1 cut(s) 1221
HinfI GANTC 8 cut(s) 296, 306, 506, 517, 578, 610, 760, 1000
HpaII CCGG 6 cut(s) 223, 300, 314, 330, 936, 959
HphI GGTGA 3 cut(s) 21, 769, 836
Hpy166II GTNNAC 2 cut(s) 980, 1183
Hpy188I TCNGA 9 cut(s) 60, 82, 343, 399, 417, 522, 558, 1254, 1287
Hpy188III TCNNGA 5 cut(s) 223, 300, 764, 936, 959
Hpy8I GTNNAC 2 cut(s) 980, 1183
Hpy99I CGWCG 3 cut(s) 371, 1010, 1051
HpyAV CCTTC 6 cut(s) 696, 776, 956, 1284, 1288, 1330
HpyCH4III ACNGT 2 cut(s) 16, 1308
HpyCH4V TGCA 8 cut(s) 244, 362, 380, 595, 886, 980, 1125, 1364
HpyF3I CTNAG 4 cut(s) 57, 73, 236, 892
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 9 cut(s) 481, 595, 673, 756, 776, 782, 1034, 1315, 1329
HspAI GCGC 1 cut(s) 1221
Kpn2I TCCGGA 4 cut(s) 222, 299, 935, 958
Ksp22I TGATCA 1 cut(s) 841
Kzo9I GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
LmnI GCTCC 2 cut(s) 1196, 1252
LweI GCATC 5 cut(s) 141, 439, 445, 562, 1234
MaeI CTAG 2 cut(s) 837, 1188
MaeIII GTNAC 2 cut(s) 101, 530
MalI GATC 6 cut(s) 163, 221, 625, 843, 1277, 1333
MboI GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
MfeI CAATTG 1 cut(s) 1142
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 982
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 8 cut(s) 64, 352, 746, 931, 1078, 1106, 1142, 1157
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 2 cut(s) 300, 769
MmeI TCCRAC 2 cut(s) 1092, 1277
Mox20I TGGCCA 1 cut(s) 777
MroI TCCGGA 4 cut(s) 222, 299, 935, 958
MscI TGGCCA 1 cut(s) 777
MseI TTAA 4 cut(s) 570, 831, 987, 1375
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 777
MspA1I CMGCKG 4 cut(s) 584, 1202, 1212, 1268
MspI CCGG 6 cut(s) 223, 300, 314, 330, 936, 959
MspR9I CCNGG 2 cut(s) 331, 705
MunI CAATTG 1 cut(s) 1142
MvaI CCWGG 1 cut(s) 705
NciI CCSGG 1 cut(s) 331
NdeII GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
NlaIII CATG 9 cut(s) 481, 595, 673, 756, 776, 782, 1034, 1315, 1329
NlaIV GGNNCC 3 cut(s) 495, 790, 1207
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 530
NspI RCATGY 2 cut(s) 673, 1329
PciI ACATGT 1 cut(s) 669
PfeI GAWTC 6 cut(s) 296, 506, 517, 578, 610, 1000
PflFI GACNNNGTC 1 cut(s) 1258
PleI GAGTC 2 cut(s) 300, 768
PpsI GAGTC 2 cut(s) 300, 768
PscI ACATGT 1 cut(s) 669
PshBI ATTAAT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 3 cut(s) 495, 790, 1207
PspPI GGNCC 3 cut(s) 211, 494, 800
PstI CTGCAG 2 cut(s) 364, 382
PstNI CAGNNNCTG 2 cut(s) 587, 1268
PsuI RGATCY 1 cut(s) 219
PsyI GACNNNGTC 1 cut(s) 1258
PvuII CAGCTG 2 cut(s) 584, 1202
RsaI GTAC 7 cut(s) 18, 55, 89, 461, 947, 995, 1341
RsaNI GTAC 7 cut(s) 17, 54, 88, 460, 946, 994, 1340
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 4 cut(s) 570, 831, 987, 1375
Sau3AI GATC 6 cut(s) 161, 219, 623, 841, 1275, 1331
Sau96I GGNCC 3 cut(s) 211, 494, 800
SbfI CCTGCAGG 1 cut(s) 364
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 2 cut(s) 300, 769
ScrFI CCNGG 2 cut(s) 331, 705
SdaI CCTGCAGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 982
SfaNI GCATC 5 cut(s) 141, 439, 445, 562, 1234
SfcI CTRYAG 3 cut(s) 136, 360, 378
SinI GGWCC 2 cut(s) 494, 800
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse8387I CCTGCAGG 1 cut(s) 364
Sse9I AATT 8 cut(s) 64, 352, 746, 931, 1078, 1106, 1142, 1157
SspI AATATT 1 cut(s) 36
SspMI CTAG 2 cut(s) 837, 1188
StyD4I CCNGG 2 cut(s) 329, 703
TaaI ACNGT 2 cut(s) 16, 1308
TaqI TCGA 4 cut(s) 252, 563, 1278, 1334
TaqII GACCGA 1 cut(s) 998
TasI AATT 8 cut(s) 64, 352, 746, 931, 1078, 1106, 1142, 1157
TatI WGTACW 4 cut(s) 16, 87, 945, 993
TauI GCSGC 7 cut(s) 407, 430, 452, 902, 1100, 1215, 1268
TfiI GAWTC 6 cut(s) 296, 506, 517, 578, 610, 1000
Tru1I TTAA 4 cut(s) 570, 831, 987, 1375
Tru9I TTAA 4 cut(s) 570, 831, 987, 1375
TscAI CASTG 2 cut(s) 982, 1132
TseFI GTSAC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 7 cut(s) 336, 623, 678, 795, 852, 870, 1019
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 982, 1132
Tth111I GACNNNGTC 1 cut(s) 1258
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 2 cut(s) 494, 800
VspI ATTAAT 1 cut(s) 570
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 1 cut(s) 1078
XceI RCATGY 2 cut(s) 673, 1329
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XspI CTAG 2 cut(s) 837, 1188
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.