Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Reverse (-)

78270492 .. 78277274

Gene Structure 6783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGGAATAGCAACAGTACAACCACTCTCACCAATATTCTTCTCATCAAACTCATCAAAGGGTACTCACAATAATTCAATCTCGGAAAAGTACTCCAATTCAGGTAACTCTATGTCCCAAGACTACCATCAAAGCATCTACAGCTTCCCCAATGGCTTCGAAAGATCGGCGATGACCACCCACCAAGAGCAGCAGCAGCAACAGCAGCAGCAACAACACTTAGCACAGCAGATCCGGAGGGAAAAGCTGAGGATACAAGGGTTCGAGCCACCTCCTCCCTCATTGGTCGGGTTAGACGAGGAAGAATCCGGAGGCCTCAATCCGGTGTATGAAACAGCTGGGATGTTGTCGGAGATGTTTAATTATCCTGCAGGAGTCGCACCACCTGCAGAACTGCTTGAACATCCGATGGCTGCCGGCTATCGGATGGCTCGGCCGCAGCAGCATCAATCTGCTGCGGCCGAATGGTATGGAAGCAGACAAAACATGGTGGGCGGATTGGGTCCATTGGGGGATTCAAATAAGAATCAGAGTGGCCGCGACAACTTAGCAGCTCATCAGCATCAGATTTCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCTTCTCCTCCAGCTCACTCAACTTCTTCTACTCTTCACATGTTGCTCCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGCGGAGGAGGAGGGGCTTTTGGTCAATTCTCATGGGTGAGTCAAGATACTCATGGCCATGAAGGCGGTTCCACAACTGGTCCTGCCCACCAACTCAACACCAGCAACATTAACCCTAGTGATCACCACCAGCAAGGTCTTTCTTTATCTTTATCCACTTCATTGCAACACTTAGAGGCAGCCAAAGCAGAAGAACTACGAATGGGAGATGGTTCCGGATTGTTGTACTACAACAATCCGGAAGGGTCTTCCAGCAGTGCACATTACAACCAGTACAAGAATCTCGTTGGTCATCAAAGCCAGCAGGTTCATGTCGGGTTCGGGTCGTCATCTTTCGGGGTTGTGAATGTCTTGAGGAATTCAAAGTATGTTAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTGGGTCGACAGAATAGCTCATTAAACCCTAGCTCCAATCCAGCTGGCGGTGGCGCCTCTTCATCTTCATCAAAGGATGCGCCTCCTACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATCGAAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAACGCATTTGATCTGGTGATGGGTTTCGGGGCCGCGGTGCCGTACACAGCCCTAGCTCAGAAGGCAATGTCACGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTCGGAGAGAAAGATGGTGCGGGGAACTCAGGTATAACCAAAGGAGAGACGCCGAGGCTAAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGATCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTCTCTCCAGAAACCAGGTCTCAAACTGGTTCATCAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGGTGGTGGTGCAGCTGCAGAAGCAACAGTATCAGTAGATCAAGATCAGAGATCAGAACAACGCAACAACCAAAACAACAACACTAGTGACCACCACGCACAGACTCCAACGCCTCCCACAACAACAACAACGACAACTGCCATGTCAGCCACAACGACAACAACAGCAGCTACAAGATCCGATATCAATGCCTCCGAAAGTGACCCTTCACTCCTCGCATTCAATAGGCAACGATCCTTCTCGGAAAACCAATCCACTACTCCTACTTACCCCATCAACATGTCCACCAGCACCACCGCCACCGCTCTGGTGGCGCCGCCTGTGCCCTACGCCACCACCGCCGACGACACGTGTCGCCGCGGCAGCATGGACTACGGGACCACCTCGGGCAACGCATCATCATCAGCAGTTGAAGGAGATCATCAAAGTCTTCATCATCATGCAGGGTCTACGCTTATAACGTTCGGGACCACCACGGCGGGTGATGTGTCTCTCACTCTAGGGCTCCGCCATGCCGGAGGAGCAAACATTCCCGAGAAGAACACTTCTTCCTTCTCCATTAGAGACTTTGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

808

Amino Acids

87.54

Weight (kDa)

6.51

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	357 - 489	1.3e-47	Associated with HOX
Homeobox_KN	PF05920	559 - 598	5.9e-19	Homeobox KN domain
Homeodomain	PF00046	566 - 598	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2303
AarI	CACCTGC	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	1743
Acc36I	ACCTGC	2 cut(s)	394, 1015
AccB1I	GGYRCC	4 cut(s)	1211, 1399, 1446, 2158
AccBSI	CCGCTC	1 cut(s)	2150
AccI	GTMKAC	2 cut(s)	1165, 2294
AccII	CGCG	4 cut(s)	540, 1397, 1460, 2205
AccIII	TCCGGA	4 cut(s)	234, 308, 935, 958
AclI	AACGTT	1 cut(s)	2306
AclWI	GGATC	5 cut(s)	226, 1274, 1326, 2016, 2073
AcoI	YGGCCR	4 cut(s)	434, 459, 535, 775
AcsI	RAATTY	1 cut(s)	1078
AcvI	CACGTG	1 cut(s)	2196
AcyI	GRCGYC	3 cut(s)	1212, 1544, 2159
AfaI	GTAC	8 cut(s)	18, 64, 92, 947, 995, 1406, 1703, 1823
AfiI	CCNNNNNNNGG	6 cut(s)	322, 423, 716, 1205, 1263, 1637
AflIII	ACRYGT	4 cut(s)	675, 2124, 2193, 2195
AgsI	TTSAA	8 cut(s)	78, 401, 519, 1083, 1147, 1477, 2068, 2258
AhlI	ACTAGT	1 cut(s)	1928
AjnI	CCWGG	3 cut(s)	709, 1673, 1758
AjuI	GAANNNNNNNTTGG	6 cut(s)	622, 654, 1142, 1174, 1626, 1658
AleI	CACNNNNGTG	1 cut(s)	1485
AloI	GAACNNNNNNTCC	2 cut(s)	2378, 2410
Alw21I	GWGCWC	1 cut(s)	982
Alw26I	GTCTC	7 cut(s)	1535, 1570, 1621, 1751, 1768, 2340, 2403
Alw44I	GTGCAC	1 cut(s)	978
AlwI	GGATC	5 cut(s)	226, 1274, 1326, 2016, 2073
AlwNI	CAGNNNCTG	2 cut(s)	596, 1259
Ama87I	CYCGRG	2 cut(s)	2230, 2378
Aor13HI	TCCGGA	4 cut(s)	234, 308, 935, 958
AoxI	GGCC	8 cut(s)	313, 434, 459, 535, 775, 1095, 1392, 1639
ApaLI	GTGCAC	1 cut(s)	978
ApoI	RAATTY	1 cut(s)	1078
ArsI	GACNNNNNNTTYG	2 cut(s)	1641, 1673
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	4 cut(s)	1214, 1240, 1471, 2161
AspS9I	GGNCC	5 cut(s)	503, 800, 1392, 2223, 2313
AsuHPI	GGTGA	5 cut(s)	21, 769, 836, 1390, 2339
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	2 cut(s)	2230, 2378
AvaII	GGWCC	4 cut(s)	503, 800, 2223, 2313
BaeGI	GKGCMC	2 cut(s)	982, 2172
BaeI	ACNNNNGTAYC	2 cut(s)	245, 278
BalI	TGGCCA	1 cut(s)	777
BanI	GGYRCC	4 cut(s)	1211, 1399, 1446, 2158
BanII	GRGCYC	1 cut(s)	2352
BbrPI	CACGTG	1 cut(s)	2196
BbsI	GAAGAC	2 cut(s)	960, 2267
Bbv12I	GWGCWC	1 cut(s)	982
BbvCI	CCTCAGC	1 cut(s)	248
BccI	CCATC	9 cut(s)	135, 403, 421, 923, 1375, 1502, 1594, 1603, 2126
BceAI	ACGGC	3 cut(s)	1387, 1451, 2337
BcgI	CGANNNNNNTGC	2 cut(s)	2015, 2049
BciT130I	CCWGG	3 cut(s)	711, 1675, 1760
BciVI	GTATCC	1 cut(s)	246
BclI	TGATCA	1 cut(s)	841
BcoDI	GTCTC	7 cut(s)	1535, 1570, 1621, 1751, 1768, 2340, 2403
BcuI	ACTAGT	1 cut(s)	1928
BfaI	CTAG	7 cut(s)	837, 1188, 1415, 1562, 1785, 1929, 2345
BfmI	CTRYAG	4 cut(s)	139, 369, 387, 1860
BfoI	RGCGCY	2 cut(s)	1215, 2162
BfuAI	ACCTGC	2 cut(s)	394, 1015
BfuI	GTATCC	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	783
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	711, 1675, 1760
Bme18I	GGWCC	4 cut(s)	503, 800, 2223, 2313
BmeT110I	CYCGRG	2 cut(s)	2230, 2378
BmgT120I	GGNCC	5 cut(s)	503, 800, 1392, 2223, 2313
BmrFI	CCNGG	3 cut(s)	711, 1675, 1760
BmsI	GCATC	8 cut(s)	144, 454, 571, 1225, 1548, 1702, 1732, 2249
BoxI	GACNNNNGTC	1 cut(s)	2196
BpiI	GAAGAC	2 cut(s)	960, 2267
BpmI	CTGGAG	2 cut(s)	630, 1735
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	1093, 1687
BsaAI	YACGTR	1 cut(s)	2196
BsaBI	GATNNNNATC	2 cut(s)	1722, 1887
BsaHI	GRCGYC	3 cut(s)	1212, 1544, 2159
BsaI	GGTCTC	3 cut(s)	1621, 1751, 1768
BsaJI	CCNNGG	7 cut(s)	710, 1395, 1547, 1806, 2203, 2229, 2319
BsaWI	WCCGGW	6 cut(s)	234, 308, 322, 935, 958, 1443
BsaXI	ACNNNNNCTCC	2 cut(s)	1175, 1205
Bsc4I	CCNNNNNNNGG	6 cut(s)	322, 423, 716, 1205, 1263, 1637
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	4 cut(s)	802, 991, 1747, 1775
Bse3DI	GCAATG	2 cut(s)	881, 1434
Bse8I	GATNNNNATC	2 cut(s)	1722, 1887
BseAI	TCCGGA	4 cut(s)	234, 308, 935, 958
BseBI	CCWGG	3 cut(s)	711, 1675, 1760
BseDI	CCNNGG	7 cut(s)	710, 1395, 1547, 1806, 2203, 2229, 2319
BseGI	GGATG	5 cut(s)	348, 403, 432, 695, 1240
BseJI	GATNNNNATC	2 cut(s)	1722, 1887
BseLI	CCNNNNNNNGG	6 cut(s)	322, 423, 716, 1205, 1263, 1637
BseMI	GCAATG	2 cut(s)	881, 1434
BseMII	CTCAG	4 cut(s)	239, 1433, 1536, 1565
BseNI	ACTGG	4 cut(s)	802, 991, 1747, 1775
BseRI	GAGGAG	6 cut(s)	264, 633, 741, 744, 2048, 2379
BseSI	GKGCMC	2 cut(s)	982, 2172
BseX3I	CGGCCG	2 cut(s)	434, 459
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	1875
Bsh1236I	CGCG	4 cut(s)	540, 1397, 1460, 2205
Bsh1285I	CGRYCG	2 cut(s)	437, 462
BshFI	GGCC	8 cut(s)	315, 436, 461, 537, 777, 1097, 1394, 1641
BshNI	GGYRCC	4 cut(s)	1211, 1399, 1446, 2158
BsiEI	CGRYCG	2 cut(s)	437, 462
BsiHKAI	GWGCWC	1 cut(s)	982
BsiHKCI	CYCGRG	2 cut(s)	2230, 2378
BsiSI	CCGG	8 cut(s)	235, 309, 323, 417, 936, 959, 1444, 2361
BslFI	GGGAC	3 cut(s)	100, 2236, 2326
BslI	CCNNNNNNNGG	6 cut(s)	322, 423, 716, 1205, 1263, 1637
BsmAI	GTCTC	7 cut(s)	1535, 1570, 1621, 1751, 1768, 2340, 2403
BsmBI	CGTCTC	1 cut(s)	1535
BsmFI	GGGAC	3 cut(s)	100, 2236, 2326
BsmI	GAATGC	1 cut(s)	2063
BsnI	GGCC	8 cut(s)	315, 436, 461, 537, 777, 1097, 1394, 1641
Bso31I	GGTCTC	3 cut(s)	1621, 1751, 1768
BsoBI	CYCGRG	2 cut(s)	2230, 2378
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	982, 2172, 2352
Bsp13I	TCCGGA	4 cut(s)	234, 308, 935, 958
Bsp19I	CCATGG	1 cut(s)	1806
BspANI	GGCC	8 cut(s)	315, 436, 461, 537, 777, 1097, 1394, 1641
BspCNI	CTCAG	4 cut(s)	240, 1432, 1535, 1566
BspEI	TCCGGA	4 cut(s)	234, 308, 935, 958
BspFNI	CGCG	4 cut(s)	540, 1397, 1460, 2205
BspMAI	CTGCAG	3 cut(s)	373, 391, 1864
BspMI	ACCTGC	2 cut(s)	394, 1015
BspPI	GGATC	5 cut(s)	226, 1274, 1326, 2016, 2073
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	4 cut(s)	1211, 1399, 1446, 2158
BspTNI	GGTCTC	3 cut(s)	1621, 1751, 1768
BsrBI	CCGCTC	1 cut(s)	2150
BsrDI	GCAATG	2 cut(s)	881, 1434
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	802, 991, 1747, 1775
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	7 cut(s)	710, 1395, 1547, 1806, 2203, 2229, 2319
BssNI	GRCGYC	3 cut(s)	1212, 1544, 2159
BssT1I	CCWWGG	1 cut(s)	1806
Bst2UI	CCWGG	3 cut(s)	711, 1675, 1760
Bst4CI	ACNGT	3 cut(s)	16, 1296, 1873
Bst6I	CTCTTC	4 cut(s)	675, 1110, 1222, 1809
BstACI	GRCGYC	3 cut(s)	1212, 1544, 2159
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	2196
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	4 cut(s)	418, 1022, 1204, 1343
BstDEI	CTNAG	7 cut(s)	220, 248, 547, 892, 1419, 1522, 1574
BstDSI	CCRYGG	4 cut(s)	1395, 1806, 2203, 2319
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	5 cut(s)	348, 403, 432, 695, 1240
BstFNI	CGCG	4 cut(s)	540, 1397, 1460, 2205
BstH2I	RGCGCY	2 cut(s)	1215, 2162
BstHHI	GCGC	4 cut(s)	1214, 1240, 1471, 2161
BstMAI	GTCTC	7 cut(s)	1535, 1570, 1621, 1751, 1768, 2340, 2403
BstMCI	CGRYCG	2 cut(s)	437, 462
BstNI	CCWGG	3 cut(s)	711, 1675, 1760
BstNSI	RCATGY	2 cut(s)	679, 2128
BstPAI	GACNNNNGTC	1 cut(s)	2196
BstSCI	CCNGG	3 cut(s)	709, 1673, 1758
BstSFI	CTRYAG	4 cut(s)	139, 369, 387, 1860
BstSLI	GKGCMC	2 cut(s)	982, 2172
BstUI	CGCG	4 cut(s)	540, 1397, 1460, 2205
BstV2I	GAAGAC	2 cut(s)	960, 2267
BstX2I	RGATCY	2 cut(s)	231, 2021
BstXI	CCANNNNNNTGG	1 cut(s)	2152
BstYI	RGATCY	2 cut(s)	231, 2021
BstZI	CGGCCG	2 cut(s)	434, 459
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	8 cut(s)	315, 436, 461, 537, 777, 1097, 1394, 1641
BtgI	CCRYGG	4 cut(s)	1395, 1806, 2203, 2319
BtgZI	GCGATG	2 cut(s)	185, 1725
BtsCI	GGATG	5 cut(s)	348, 403, 432, 695, 1240
BtsI	GCAGTG	2 cut(s)	982, 1132
BtsIMutI	CAGTG	2 cut(s)	982, 1132
BveI	ACCTGC	2 cut(s)	394, 1015
Cac8I	GCNNGC	4 cut(s)	418, 1022, 1204, 1343
CaiI	CAGNNNCTG	2 cut(s)	596, 1259
CfoI	GCGC	4 cut(s)	1214, 1240, 1471, 2161
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	503, 800, 1392, 2223, 2313
Cfr42I	CCGCGG	2 cut(s)	1398, 2206
CseI	GACGC	2 cut(s)	1466, 1552
CsiI	ACCWGGT	1 cut(s)	1758
Csp6I	GTAC	8 cut(s)	17, 63, 91, 946, 994, 1405, 1702, 1822
CviQI	GTAC	8 cut(s)	17, 63, 91, 946, 994, 1405, 1702, 1822
DdeI	CTNAG	7 cut(s)	220, 248, 547, 892, 1419, 1522, 1574
DinI	GGCGCC	2 cut(s)	1213, 2160
DrdI	GACNNNNNNGTC	1 cut(s)	1743
DseDI	GACNNNNNNGTC	1 cut(s)	1743
EaeI	YGGCCR	4 cut(s)	434, 459, 535, 775
EagI	CGGCCG	2 cut(s)	434, 459
Eam1104I	CTCTTC	4 cut(s)	675, 1110, 1222, 1809
EarI	CTCTTC	4 cut(s)	675, 1110, 1222, 1809
EciI	GGCGGA	3 cut(s)	510, 738, 2342
EclXI	CGGCCG	2 cut(s)	434, 459
Eco130I	CCWWGG	1 cut(s)	1806
Eco147I	AGGCCT	2 cut(s)	315, 1641
Eco24I	GRGCYC	1 cut(s)	2352
Eco31I	GGTCTC	3 cut(s)	1621, 1751, 1768
Eco32I	GATATC	1 cut(s)	2029
Eco47I	GGWCC	4 cut(s)	503, 800, 2223, 2313
Eco52I	CGGCCG	2 cut(s)	434, 459
Eco72I	CACGTG	1 cut(s)	2196
Eco88I	CYCGRG	2 cut(s)	2230, 2378
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRI	GAATTC	1 cut(s)	1078
EcoRII	CCWGG	3 cut(s)	709, 1673, 1758
EcoRV	GATATC	1 cut(s)	2029
EcoT14I	CCWWGG	1 cut(s)	1806
EcoT38I	GRGCYC	1 cut(s)	2352
EgeI	GGCGCC	2 cut(s)	1213, 2160
EheI	GGCGCC	2 cut(s)	1213, 2160
ErhI	CCWWGG	1 cut(s)	1806
Esp3I	CGTCTC	1 cut(s)	1535
FalI	AAGNNNNNCTT	4 cut(s)	622, 654, 2035, 2067
FaqI	GGGAC	3 cut(s)	100, 2236, 2326
FauI	CCCGC	2 cut(s)	1507, 2317
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	1165, 2294
FokI	GGATG	5 cut(s)	355, 390, 439, 682, 1247
FriOI	GRGCYC	1 cut(s)	2352
FspBI	CTAG	7 cut(s)	837, 1188, 1415, 1562, 1785, 1929, 2345
GlaI	GCGC	4 cut(s)	1213, 1239, 1470, 2160
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	2 cut(s)	630, 1735
HaeII	RGCGCY	2 cut(s)	1215, 2162
HaeIII	GGCC	8 cut(s)	315, 436, 461, 537, 777, 1097, 1394, 1641
HapII	CCGG	8 cut(s)	235, 309, 323, 417, 936, 959, 1444, 2361
HgaI	GACGC	2 cut(s)	1466, 1552
HhaI	GCGC	4 cut(s)	1214, 1240, 1471, 2161
Hin1I	GRCGYC	3 cut(s)	1212, 1544, 2159
Hin6I	GCGC	4 cut(s)	1212, 1238, 1469, 2159
HinP1I	GCGC	4 cut(s)	1212, 1238, 1469, 2159
HincII	GTYRAC	3 cut(s)	1166, 1363, 1660
HindII	GTYRAC	3 cut(s)	1166, 1363, 1660
HindIII	AAGCTT	1 cut(s)	1620
HinfI	GANTC	9 cut(s)	305, 375, 515, 526, 587, 619, 760, 1000, 1948
HpaI	GTTAAC	1 cut(s)	1363
HpaII	CCGG	8 cut(s)	235, 309, 323, 417, 936, 959, 1444, 2361
HphI	GGTGA	5 cut(s)	21, 769, 836, 1390, 2339
Hpy166II	GTNNAC	7 cut(s)	980, 1166, 1363, 1407, 1660, 2130, 2295
Hpy8I	GTNNAC	7 cut(s)	980, 1166, 1363, 1407, 1660, 2130, 2295
Hpy99I	CGWCG	1 cut(s)	2192
HpyCH4III	ACNGT	3 cut(s)	16, 1296, 1873
HpyCH4IV	ACGT	2 cut(s)	2195, 2306
HpyF3I	CTNAG	7 cut(s)	220, 248, 547, 892, 1419, 1522, 1574
HpySE526I	ACGT	2 cut(s)	2195, 2306
Hsp92I	GRCGYC	3 cut(s)	1212, 1544, 2159
HspAI	GCGC	4 cut(s)	1212, 1238, 1469, 2159
KasI	GGCGCC	2 cut(s)	1211, 2158
Kpn2I	TCCGGA	4 cut(s)	234, 308, 935, 958
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	1363
KspI	CCGCGG	2 cut(s)	1398, 2206
LmnI	GCTCC	4 cut(s)	687, 1196, 2355, 2366
LweI	GCATC	8 cut(s)	144, 454, 571, 1225, 1548, 1702, 1732, 2249
MabI	ACCWGGT	1 cut(s)	1758
MaeI	CTAG	7 cut(s)	837, 1188, 1415, 1562, 1785, 1929, 2345
MaeII	ACGT	2 cut(s)	2195, 2306
MaeIII	GTNAC	5 cut(s)	104, 1431, 1462, 1931, 2045
MbiI	CCGCTC	1 cut(s)	2150
MfeI	CAATTG	1 cut(s)	1142
MflI	RGATCY	2 cut(s)	231, 2021
MhlI	GDGCHC	3 cut(s)	982, 2172, 2352
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	9 cut(s)	73, 97, 361, 746, 1078, 1106, 1142, 1157, 1490
MluNI	TGGCCA	1 cut(s)	777
Mly113I	GGCGCC	2 cut(s)	1212, 2159
MlyI	GAGTC	3 cut(s)	384, 769, 1942
MmeI	TCCRAC	3 cut(s)	330, 1092, 1976
Mox20I	TGGCCA	1 cut(s)	777
MroI	TCCGGA	4 cut(s)	234, 308, 935, 958
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	7 cut(s)	360, 579, 831, 1092, 1181, 1362, 2425
MslI	CAYNNNNRTG	4 cut(s)	777, 1485, 2123, 2283
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	8 cut(s)	338, 593, 1202, 1259, 1397, 1485, 1859, 2205
MspI	CCGG	8 cut(s)	235, 309, 323, 417, 936, 959, 1444, 2361
MspR9I	CCNGG	3 cut(s)	711, 1675, 1760
MunI	CAATTG	1 cut(s)	1142
Mva1269I	GAATGC	1 cut(s)	2063
MvaI	CCWGG	3 cut(s)	711, 1675, 1760
MvnI	CGCG	4 cut(s)	540, 1397, 1460, 2205
NaeI	GCCGGC	1 cut(s)	418
NarI	GGCGCC	2 cut(s)	1212, 2159
NcoI	CCATGG	1 cut(s)	1806
NgoMIV	GCCGGC	1 cut(s)	416
NmeAIII	GCCGAG	2 cut(s)	412, 1572
NmuCI	GTSAC	3 cut(s)	1431, 1931, 2045
NspI	RCATGY	2 cut(s)	679, 2128
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	1485
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	2 cut(s)	315, 1641
PciI	ACATGT	2 cut(s)	675, 2124
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 2303
PctI	GAATGC	1 cut(s)	2063
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	6 cut(s)	305, 515, 526, 587, 619, 1000
PleI	GAGTC	3 cut(s)	383, 768, 1942
PluTI	GGCGCC	2 cut(s)	1215, 2162
PmaCI	CACGTG	1 cut(s)	2196
PmlI	CACGTG	1 cut(s)	2196
PpsI	GAGTC	3 cut(s)	383, 768, 1942
Ppu21I	YACGTR	1 cut(s)	2196
PscI	ACATGT	2 cut(s)	675, 2124
PshAI	GACNNNNGTC	1 cut(s)	2196
PshBI	ATTAAT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	2303
Psp1406I	AACGTT	1 cut(s)	2306
Psp6I	CCWGG	3 cut(s)	709, 1673, 1758
PspCI	CACGTG	1 cut(s)	2196
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	3 cut(s)	709, 1673, 1758
PspPI	GGNCC	5 cut(s)	503, 800, 1392, 2223, 2313
PstI	CTGCAG	3 cut(s)	373, 391, 1864
PstNI	CAGNNNCTG	2 cut(s)	596, 1259
PsuI	RGATCY	2 cut(s)	231, 2021
PvuII	CAGCTG	5 cut(s)	338, 593, 1202, 1485, 1859
RsaI	GTAC	8 cut(s)	18, 64, 92, 947, 995, 1406, 1703, 1823
RsaNI	GTAC	8 cut(s)	17, 63, 91, 946, 994, 1405, 1702, 1822
RseI	CAYNNNNRTG	4 cut(s)	777, 1485, 2123, 2283
SacII	CCGCGG	2 cut(s)	1398, 2206
SalI	GTCGAC	1 cut(s)	1164
SaqAI	TTAA	7 cut(s)	360, 579, 831, 1092, 1181, 1362, 2425
Sau96I	GGNCC	5 cut(s)	503, 800, 1392, 2223, 2313
SbfI	CCTGCAGG	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	3 cut(s)	384, 769, 1942
ScrFI	CCNGG	3 cut(s)	711, 1675, 1760
SdaI	CCTGCAGG	1 cut(s)	373
SduI	GDGCHC	3 cut(s)	982, 2172, 2352
SexAI	ACCWGGT	1 cut(s)	1758
SfaNI	GCATC	8 cut(s)	144, 454, 571, 1225, 1548, 1702, 1732, 2249
SfcI	CTRYAG	4 cut(s)	139, 369, 387, 1860
SfoI	GGCGCC	2 cut(s)	1213, 2160
Sfr303I	CCGCGG	2 cut(s)	1398, 2206
SfuI	TTCGAA	1 cut(s)	159
SgrBI	CCGCGG	2 cut(s)	1398, 2206
SinI	GGWCC	4 cut(s)	503, 800, 2223, 2313
SmiMI	CAYNNNNRTG	4 cut(s)	777, 1485, 2123, 2283
SmlI	CTYRAG	2 cut(s)	1072, 1666
SmoI	CTYRAG	2 cut(s)	1072, 1666
SpeI	ACTAGT	1 cut(s)	1928
Sse8387I	CCTGCAGG	1 cut(s)	373
Sse9I	AATT	9 cut(s)	73, 97, 361, 746, 1078, 1106, 1142, 1157, 1490
SseBI	AGGCCT	2 cut(s)	315, 1641
SspDI	GGCGCC	2 cut(s)	1211, 2158
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	7 cut(s)	837, 1188, 1415, 1562, 1785, 1929, 2345
StuI	AGGCCT	2 cut(s)	315, 1641
StyD4I	CCNGG	3 cut(s)	709, 1673, 1758
StyI	CCWWGG	1 cut(s)	1806
TaaI	ACNGT	3 cut(s)	16, 1296, 1873
TaiI	ACGT	2 cut(s)	2198, 2309
TaqI	TCGA	7 cut(s)	159, 264, 572, 1165, 1269, 1321, 1792
TasI	AATT	9 cut(s)	73, 97, 361, 746, 1078, 1106, 1142, 1157, 1490
TatI	WGTACW	4 cut(s)	16, 90, 945, 993
TauI	GCSGC	9 cut(s)	439, 461, 540, 1100, 1259, 1397, 2164, 2205, 2208
TfiI	GAWTC	6 cut(s)	305, 515, 526, 587, 619, 1000
Tru1I	TTAA	7 cut(s)	360, 579, 831, 1092, 1181, 1362, 2425
Tru9I	TTAA	7 cut(s)	360, 579, 831, 1092, 1181, 1362, 2425
TscAI	CASTG	2 cut(s)	982, 1132
TseFI	GTSAC	3 cut(s)	1431, 1931, 2045
Tsp45I	GTSAC	3 cut(s)	1431, 1931, 2045
TspRI	CASTG	2 cut(s)	982, 1132
VneI	GTGCAC	1 cut(s)	978
VpaK11BI	GGWCC	4 cut(s)	503, 800, 2223, 2313
VspI	ATTAAT	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	679, 2128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2152
XmiI	GTMKAC	2 cut(s)	1165, 2294
XspI	CTAG	7 cut(s)	837, 1188, 1415, 1562, 1785, 1929, 2345
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.