Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

8968627 .. 8972596

Gene Structure 3970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCACGGCATTTTCGATGCCTAAAGGATGCGATCACGGCACAGTTGAAGCACAGCTGTGAGCTAATTGGAGAGAAAGATGGTGCGGGGACCTCAGGAATAACAAAAGGAGAGACCCCGAGGCTGAAGCTGCTAGAGCAAAGCCTAAGGCAGCAAAGAGCATTTCATCAAATGGGCATGATGGAACAAGAAGCTTGGAGGCCCCAACGAGGCCTGCCGGAACGCTCAGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTTCACCCGTATCCAAGCGATGCTGATAAGCATCTGTTGGCTCGACAGACTGGTCTGTCCAGAAATCAGGTCTCAAATTGGTTCATAAATGCTAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGAAGAAGTAGGACAAGGAGGAGTAGGAGGAGCTACTAGTGCAGCAGCAGATCAAGAGAGAGAACGTAACAACAATGCTGGCCTCGCTGCACAAACTCCAACGCCTACAACGACAACGACAACAACAACAACAAATTCGCCAGCAAGCAAAAGATCCGATATCAATGCCTCTGAAAACGACCCTTCACTCGTAGCAATCAATAGGCATCAGCAGCAGCAGCACCACCCTATGATGGCCACCACCACCTCCACTGCGGTGGCTCCTCCTGCGTACCAGTGCTTCCCCCCGGCAGCTTCCGATGACACGGGTCGAAGTTACGGGACCACCTCGGCTAATGCAAATATTGCAGCTCATCATGATCATCAAAATAGTAGTAATATCGATTCTTCTACGACGCTTATAAGCTTCGGGACCACCACGGCAGCTGGTGACGTGTCACTCACTCTAGGGCTCCGTCACGCTGGTGGTGGTGGTGGAAACAATATGCCCGACAAGACTTCTTCTTCTTTCTCCATTAGAGACTTCGGGGGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

318

Amino Acids

34.41

Weight (kDa)

6.49

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeobox_KN	PF05920	83 - 122	1.8e-19	Homeobox KN domain
Homeodomain	PF00046	90 - 122	4.8e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	818
AasI	GACNNNNNNGTC	2 cut(s)	315, 319
AciI	CCGC	2 cut(s)	86, 671
AclWI	GGATC	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	395, 689
AfiI	CCNNNNNNNGG	2 cut(s)	209, 649
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	1 cut(s)	49
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	245
AleI	CACNNNNGTG	3 cut(s)	57, 671, 879
AluBI	AGCT	9 cut(s)	57, 64, 130, 194, 449, 710, 767, 822, 842
AluI	AGCT	9 cut(s)	57, 64, 130, 194, 449, 710, 767, 822, 842
Alw26I	GTCTC	3 cut(s)	107, 340, 930
AlwI	GGATC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	4 cut(s)	200, 211, 496, 651
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	4 cut(s)	90, 201, 738, 828
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	260, 857
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	3 cut(s)	90, 738, 828
AxyI	CCTNAGG	2 cut(s)	94, 146
BalI	TGGCCA	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	870
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BccI	CCATC	3 cut(s)	74, 175, 643
BceAI	ACGGC	3 cut(s)	23, 54, 852
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	3 cut(s)	107, 340, 930
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	4 cut(s)	134, 357, 453, 863
BfuI	GTATCC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	247, 704
Bme18I	GGWCC	3 cut(s)	90, 738, 828
BmeT110I	CYCGRG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	4 cut(s)	90, 201, 738, 828
BmiI	GGNNCC	6 cut(s)	91, 203, 678, 739, 829, 869
BmrFI	CCNGG	2 cut(s)	247, 704
BmsI	GCATC	5 cut(s)	8, 19, 274, 304, 631
BoxI	GACNNNNGTC	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	2 cut(s)	107, 340
BsaJI	CCNNGG	5 cut(s)	119, 378, 702, 744, 834
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 649
Bse1I	ACTGG	2 cut(s)	319, 691
Bse21I	CCTNAGG	2 cut(s)	94, 146
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	247
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	5 cut(s)	119, 378, 702, 744, 834
BseGI	GGATG	1 cut(s)	34
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	209, 649
BseMII	CTCAG	2 cut(s)	108, 240
BseNI	ACTGG	2 cut(s)	319, 691
BseRI	GAGGAG	3 cut(s)	450, 459, 669
BsgI	GTGCAG	2 cut(s)	477, 489
BshFI	GGCC	4 cut(s)	202, 213, 498, 653
BshVI	ATCGAT	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	218, 704
BslFI	GGGAC	3 cut(s)	103, 751, 841
BslI	CCNNNNNNNGG	2 cut(s)	209, 649
BsmAI	GTCTC	3 cut(s)	107, 340, 930
BsmFI	GGGAC	3 cut(s)	103, 751, 841
BsnI	GGCC	4 cut(s)	202, 213, 498, 653
Bso31I	GGTCTC	2 cut(s)	107, 340
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	4 cut(s)	33, 466, 569, 775
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	2 cut(s)	86, 671
BspANI	GGCC	4 cut(s)	202, 213, 498, 653
BspCNI	CTCAG	2 cut(s)	107, 239
BspDI	ATCGAT	1 cut(s)	798
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	6 cut(s)	91, 203, 678, 739, 829, 869
BspPI	GGATC	1 cut(s)	564
BspTNI	GGTCTC	2 cut(s)	107, 340
BsrI	ACTGG	2 cut(s)	319, 691
BssECI	CCNNGG	5 cut(s)	119, 378, 702, 744, 834
BssMI	GATC	4 cut(s)	33, 466, 569, 775
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	4 cut(s)	215, 496, 558, 562
BstDEI	CTNAG	3 cut(s)	94, 146, 226
BstDSI	CCRYGG	2 cut(s)	378, 834
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	36, 469, 572, 778
BstMAI	GTCTC	3 cut(s)	107, 340, 930
BstMBI	GATC	4 cut(s)	33, 466, 569, 775
BstNI	CCWGG	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	723
BstSCI	CCNGG	2 cut(s)	245, 702
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	798
Bsu36I	CCTNAGG	2 cut(s)	94, 146
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	202, 213, 498, 653
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	2 cut(s)	378, 834
BtgZI	GCGATG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	666, 698
Cac8I	GCNNGC	4 cut(s)	215, 496, 558, 562
CciI	TCATGA	1 cut(s)	772
Cfr13I	GGNCC	4 cut(s)	90, 201, 738, 828
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	820
Csp6I	GTAC	2 cut(s)	394, 688
CviAII	CATG	3 cut(s)	178, 379, 773
CviQI	GTAC	2 cut(s)	394, 688
DdeI	CTNAG	3 cut(s)	94, 146, 226
DpnI	GATC	4 cut(s)	35, 468, 571, 777
DpnII	GATC	4 cut(s)	33, 466, 569, 775
DrdI	GACNNNNNNGTC	2 cut(s)	315, 319
DseDI	GACNNNNNNGTC	2 cut(s)	315, 319
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	870
Eco31I	GGTCTC	2 cut(s)	107, 340
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	3 cut(s)	90, 738, 828
Eco57I	CTGAAG	1 cut(s)	146
Eco81I	CCTNAGG	2 cut(s)	94, 146
Eco88I	CYCGRG	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	90, 201
EcoRII	CCWGG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	870
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	181, 382, 776
FaiI	YATR	7 cut(s)	179, 350, 380, 647, 774, 818, 902
FaqI	GGGAC	3 cut(s)	103, 751, 841
FatI	CATG	3 cut(s)	177, 378, 772
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	870
FspBI	CTAG	4 cut(s)	134, 357, 453, 863
HaeIII	GGCC	4 cut(s)	202, 213, 498, 653
HapII	CCGG	2 cut(s)	218, 704
HgaI	GACGC	1 cut(s)	820
Hin1II	CATG	3 cut(s)	181, 382, 776
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	192, 820
HinfI	GANTC	1 cut(s)	800
HpaII	CCGG	2 cut(s)	218, 704
HphI	GGTGA	2 cut(s)	260, 857
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	574, 589, 715
Hpy188III	TCNNGA	6 cut(s)	96, 238, 324, 470, 773, 826
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	814
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	2 cut(s)	481, 849
HpyCH4V	TGCA	4 cut(s)	458, 506, 755, 764
HpyF3I	CTNAG	3 cut(s)	94, 146, 226
HpySE526I	ACGT	2 cut(s)	481, 849
Hsp92II	CATG	3 cut(s)	181, 382, 776
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	33, 466, 569, 775
LmnI	GCTCC	3 cut(s)	446, 682, 873
LweI	GCATC	5 cut(s)	8, 19, 274, 304, 631
MaeI	CTAG	4 cut(s)	134, 357, 453, 863
MaeII	ACGT	2 cut(s)	481, 849
MaeIII	GTNAC	6 cut(s)	3, 482, 731, 845, 852, 872
MalI	GATC	4 cut(s)	35, 468, 571, 777
MboI	GATC	4 cut(s)	33, 466, 569, 775
MboII	GAAGA	8 cut(s)	257, 398, 425, 428, 431, 795, 909, 912
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	870
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	3 cut(s)	66, 340, 550
MluNI	TGGCCA	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	539
Mox20I	TGGCCA	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	653
MslI	CAYNNNNRTG	3 cut(s)	57, 671, 879
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	57, 842
MspI	CCGG	2 cut(s)	218, 704
MspR9I	CCNGG	2 cut(s)	247, 704
MvaI	CCWGG	1 cut(s)	247
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	4 cut(s)	33, 466, 569, 775
NlaIII	CATG	3 cut(s)	181, 382, 776
NlaIV	GGNNCC	6 cut(s)	91, 203, 678, 739, 829, 869
NmeAIII	GCCGAG	1 cut(s)	725
NmuCI	GTSAC	4 cut(s)	3, 845, 852, 872
OliI	CACNNNNGTG	3 cut(s)	57, 671, 879
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	13, 524
PfeI	GAWTC	1 cut(s)	800
PpuMI	RGGWCCY	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	723
PsiI	TTATAA	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	6 cut(s)	91, 203, 678, 739, 829, 869
PspPI	GGNCC	4 cut(s)	90, 201, 738, 828
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	569
PvuII	CAGCTG	2 cut(s)	57, 842
RsaI	GTAC	2 cut(s)	395, 689
RsaNI	GTAC	2 cut(s)	394, 688
RseI	CAYNNNNRTG	3 cut(s)	57, 671, 879
Sau3AI	GATC	4 cut(s)	33, 466, 569, 775
Sau96I	GGNCC	4 cut(s)	90, 201, 738, 828
ScrFI	CCNGG	2 cut(s)	247, 704
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	5 cut(s)	8, 19, 274, 304, 631
SinI	GGWCC	3 cut(s)	90, 738, 828
SmiMI	CAYNNNNRTG	3 cut(s)	57, 671, 879
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	66, 340, 550
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	86, 671
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	4 cut(s)	134, 357, 453, 863
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	245, 702
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	2 cut(s)	484, 852
TaqI	TCGA	4 cut(s)	16, 307, 727, 798
TasI	AATT	3 cut(s)	66, 340, 550
TfiI	GAWTC	1 cut(s)	800
TscAI	CASTG	2 cut(s)	673, 698
TseFI	GTSAC	4 cut(s)	3, 845, 852, 872
Tsp45I	GTSAC	4 cut(s)	3, 845, 852, 872
TspDTI	ATGAA	3 cut(s)	155, 337, 426
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	2 cut(s)	673, 698
VpaK11BI	GGWCC	3 cut(s)	90, 738, 828
XapI	RAATTY	1 cut(s)	550
XspI	CTAG	4 cut(s)	134, 357, 453, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.