Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

15044076 .. 15051374

Gene Structure 7299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG159400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGGGAATAGCAACAGTACAACCACTCTCACCAATATTCTTCTCATCAAACTCATCAAAGGGTACTCACAATAATTCAATCTCGGAAAAGTACTCCAATTCAAGTAACTCTATGTCCCAAGACTACCATCAAAGCATCTACAGCTTCCCCAATGGCTTCGAAAGATCGGCGATGACCACCCACCAAGAGCAGCAGCAGCAACAGCAGCAGCAACACCACTTAGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGGTTCGAGCCACCTCCTCCGCCATTGGTCGGGTTAGACGAGGAAGAATCCGGAGGCCTCAATCCGGTGTATGAAACAGCTGGGATGTTGTCGGAGATGTTTAATTATCCTGCAGGAGTCGCACCACCTGCAGAACTGCTTGAACATCCGATGGCTGCCGGCTATCGGATGGCTCGGCCGCAGCAGCATCAATCTGCTGCGGCCGAGTGGTATGGAAGCAGACAAAACATGGTGGGCGGATTGGGTCCATTGGGGGATTCAAATAAGAATCAGAGTGGCCGCGACAACTTAGCAGCTCATCAGCATCAGATTTCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCTTCTCCTCCAGCTCACTCAACTTCTTCTACTCTTCACATGTTGCTCCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGCGGAGGCGGAGGAGGAGGAGGGGCTTTTGGTCAATTCTCATGGGTGAGTCCAGATACTCATGGCCATGAAGGCGGTTCCACAACTGGTCCTGCCCACCAACTCAACACCAGCAACATTAACCCTAGTGATCACCACCAGCAAGGTCTTTCATTATCTTTATCCACTTCATTGCAACACTTAGAGGCAGCCAAAGCCGAAGAACTACGAATGGGAGATGGTTCCGGATTGTTGTACTACAACAATCCGGAAGGGTCTTCCAGCAGTGCACATTACAGCCAGTACAAGAATCTCGTTGGTCATCAAAGCCAGCAGGTTCACGTCGGGTTCGGGTCGTCATCTTTCGGGGTTGTGAATGTCTTGAGGAATTCAAAGTATGTCAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTGGGTCGACAGAATAGCTCATTAAACCCTAGCTCCAATCCAGCTGGCACCAGCGGCGGTGGTGCTGGCGGTGGCGCCTCTTCATCTTCATCAAAGGATGCGCCTCCTACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATCGAAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAACGCATTTGATCTGGTGATGGGTTTCGGGGCCGCGGTGCCGTACACAGCCCTAGCTCAGAAGGCAATGTCACGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTCGGAGAGAAAGATGGTGCGGGGAACTCAGGTATAACCAAAGGAGAGACGCCGAGGCTAAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGATCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTCTCTCCAGAAACCAGGTCTCAAACTGGTTCATCAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGGTGGTGGTGCAGCTGCAGCAGCAGCAGTATCAGTAGATCAAGATCAGAGATCAGAACAACGCAACAACCAAAACAACAACACTAGTGACCACCACGCACAGACTCCAACGCCTCCCACAACAACAACAACGACAACTGCCATGTCAGCCACAACGACAACAACAGCAGCTACAAGATCCGATATCAATGCCTCCGAAAGTGACCCTTCACTCCTCGCATTCAATAGGCAACGATCCTTCTCGGAAAACCAATCCACTACTCCTACTTACCCCATCAACATGTCCACCAGCACCACCGCCACCGCTCTGGTGGCGCCGCCTGTGCCCTACTCCACCACCGCCGACGACACGTGTCGCCGCGGCAGCATGGACTACGGGACCACCTCGGGCAACGCATCATCATCAGCAGTTGCAGGAGATCATCAAAGTCTTCATCATCATGCAGGGTCTACGCTTATAACGTTCGGGACCACCACGGCGGGTGATGTGTCTCTCACTCTAGGGCTCCGCCATGCCGGAGGAGCAAACATTCCCGAGAAGAACACTTCTTCCTTCTCCATTAGAGACTTTGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

818

Amino Acids

88.05

Weight (kDa)

6.66

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	360 - 499	7.5e-47	Associated with HOX
Homeobox_KN	PF05920	569 - 608	6e-19	Homeobox KN domain
Homeodomain	PF00046	576 - 608	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2333
AarI	CACCTGC	1 cut(s)	394
AasI	GACNNNNNNGTC	1 cut(s)	1773
Acc36I	ACCTGC	2 cut(s)	394, 1024
AccB1I	GGYRCC	5 cut(s)	1214, 1241, 1429, 1476, 2188
AccBSI	CCGCTC	1 cut(s)	2180
AccI	GTMKAC	2 cut(s)	1174, 2324
AccII	CGCG	4 cut(s)	540, 1427, 1490, 2235
AccIII	TCCGGA	4 cut(s)	234, 308, 944, 967
AclI	AACGTT	1 cut(s)	2336
AclWI	GGATC	5 cut(s)	226, 1304, 1356, 2046, 2103
AcoI	YGGCCR	4 cut(s)	434, 459, 535, 784
AcsI	RAATTY	1 cut(s)	1087
AcvI	CACGTG	1 cut(s)	2226
AcyI	GRCGYC	3 cut(s)	1242, 1574, 2189
AfaI	GTAC	8 cut(s)	18, 64, 92, 956, 1004, 1436, 1733, 1853
AfiI	CCNNNNNNNGG	6 cut(s)	287, 322, 423, 716, 1293, 1667
AflIII	ACRYGT	4 cut(s)	675, 2154, 2223, 2225
AgsI	TTSAA	8 cut(s)	78, 102, 401, 519, 1092, 1156, 1507, 2098
AhlI	ACTAGT	1 cut(s)	1958
AjiI	CACGTC	1 cut(s)	1042
AjnI	CCWGG	3 cut(s)	709, 1703, 1788
AjuI	GAANNNNNNNTTGG	6 cut(s)	622, 654, 1151, 1183, 1656, 1688
AleI	CACNNNNGTG	1 cut(s)	1515
AloI	GAACNNNNNNTCC	2 cut(s)	2408, 2440
Alw21I	GWGCWC	1 cut(s)	991
Alw26I	GTCTC	7 cut(s)	1565, 1600, 1651, 1781, 1798, 2370, 2433
Alw44I	GTGCAC	1 cut(s)	987
AlwI	GGATC	5 cut(s)	226, 1304, 1356, 2046, 2103
AlwNI	CAGNNNCTG	2 cut(s)	596, 1289
Ama87I	CYCGRG	2 cut(s)	2260, 2408
Aor13HI	TCCGGA	4 cut(s)	234, 308, 944, 967
AoxI	GGCC	8 cut(s)	313, 434, 459, 535, 784, 1104, 1422, 1669
ApaLI	GTGCAC	1 cut(s)	987
ApoI	RAATTY	1 cut(s)	1087
ArsI	GACNNNNNNTTYG	2 cut(s)	1671, 1703
AseI	ATTAAT	1 cut(s)	579
AspLEI	GCGC	4 cut(s)	1244, 1270, 1501, 2191
AspS9I	GGNCC	5 cut(s)	503, 809, 1422, 2253, 2343
AsuHPI	GGTGA	5 cut(s)	21, 778, 845, 1420, 2369
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	2 cut(s)	2260, 2408
AvaII	GGWCC	4 cut(s)	503, 809, 2253, 2343
BaeGI	GKGCMC	2 cut(s)	991, 2202
BalI	TGGCCA	1 cut(s)	786
BanI	GGYRCC	5 cut(s)	1214, 1241, 1429, 1476, 2188
BanII	GRGCYC	1 cut(s)	2382
BbrPI	CACGTG	1 cut(s)	2226
BbsI	GAAGAC	2 cut(s)	969, 2297
Bbv12I	GWGCWC	1 cut(s)	991
BbvCI	CCTCAGC	1 cut(s)	248
BccI	CCATC	9 cut(s)	135, 403, 421, 932, 1405, 1532, 1624, 1633, 2156
BceAI	ACGGC	3 cut(s)	1417, 1481, 2367
BcgI	CGANNNNNNTGC	2 cut(s)	2045, 2079
BciT130I	CCWGG	3 cut(s)	711, 1705, 1790
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	7 cut(s)	1565, 1600, 1651, 1781, 1798, 2370, 2433
BcuI	ACTAGT	1 cut(s)	1958
BfaI	CTAG	7 cut(s)	846, 1197, 1445, 1592, 1815, 1959, 2375
BfmI	CTRYAG	4 cut(s)	139, 369, 387, 1890
BfoI	RGCGCY	2 cut(s)	1245, 2192
BfuAI	ACCTGC	2 cut(s)	394, 1024
BglI	GCCNNNNNGGC	1 cut(s)	792
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	711, 1705, 1790
Bme18I	GGWCC	4 cut(s)	503, 809, 2253, 2343
BmeT110I	CYCGRG	2 cut(s)	2260, 2408
BmgBI	CACGTC	1 cut(s)	1042
BmgT120I	GGNCC	5 cut(s)	503, 809, 1422, 2253, 2343
BmrFI	CCNGG	3 cut(s)	711, 1705, 1790
BmsI	GCATC	8 cut(s)	144, 454, 571, 1255, 1578, 1732, 1762, 2279
BoxI	GACNNNNGTC	1 cut(s)	2226
BpiI	GAAGAC	2 cut(s)	969, 2297
BpmI	CTGGAG	2 cut(s)	630, 1765
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	1102, 1717
BsaAI	YACGTR	1 cut(s)	2226
BsaBI	GATNNNNATC	2 cut(s)	1752, 1917
BsaHI	GRCGYC	3 cut(s)	1242, 1574, 2189
BsaI	GGTCTC	3 cut(s)	1651, 1781, 1798
BsaJI	CCNNGG	7 cut(s)	710, 1425, 1577, 1836, 2233, 2259, 2349
BsaWI	WCCGGW	6 cut(s)	234, 308, 322, 944, 967, 1473
BsaXI	ACNNNNNCTCC	2 cut(s)	1184, 1214
Bsc4I	CCNNNNNNNGG	6 cut(s)	287, 322, 423, 716, 1293, 1667
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	4 cut(s)	811, 1000, 1777, 1805
Bse3DI	GCAATG	2 cut(s)	890, 1464
Bse8I	GATNNNNATC	2 cut(s)	1752, 1917
BseAI	TCCGGA	4 cut(s)	234, 308, 944, 967
BseBI	CCWGG	3 cut(s)	711, 1705, 1790
BseDI	CCNNGG	7 cut(s)	710, 1425, 1577, 1836, 2233, 2259, 2349
BseGI	GGATG	5 cut(s)	348, 403, 432, 695, 1270
BseJI	GATNNNNATC	2 cut(s)	1752, 1917
BseLI	CCNNNNNNNGG	6 cut(s)	287, 322, 423, 716, 1293, 1667
BseMI	GCAATG	2 cut(s)	890, 1464
BseMII	CTCAG	4 cut(s)	239, 1463, 1566, 1595
BseNI	ACTGG	4 cut(s)	811, 1000, 1777, 1805
BseRI	GAGGAG	7 cut(s)	264, 633, 747, 750, 753, 2078, 2409
BseSI	GKGCMC	2 cut(s)	991, 2202
BseX3I	CGGCCG	2 cut(s)	434, 459
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	1905
Bsh1236I	CGCG	4 cut(s)	540, 1427, 1490, 2235
Bsh1285I	CGRYCG	2 cut(s)	437, 462
BshFI	GGCC	8 cut(s)	315, 436, 461, 537, 786, 1106, 1424, 1671
BshNI	GGYRCC	5 cut(s)	1214, 1241, 1429, 1476, 2188
BsiEI	CGRYCG	2 cut(s)	437, 462
BsiHKAI	GWGCWC	1 cut(s)	991
BsiHKCI	CYCGRG	2 cut(s)	2260, 2408
BsiSI	CCGG	8 cut(s)	235, 309, 323, 417, 945, 968, 1474, 2391
BslFI	GGGAC	3 cut(s)	100, 2266, 2356
BslI	CCNNNNNNNGG	6 cut(s)	287, 322, 423, 716, 1293, 1667
BsmAI	GTCTC	7 cut(s)	1565, 1600, 1651, 1781, 1798, 2370, 2433
BsmBI	CGTCTC	1 cut(s)	1565
BsmFI	GGGAC	3 cut(s)	100, 2266, 2356
BsmI	GAATGC	1 cut(s)	2093
BsnI	GGCC	8 cut(s)	315, 436, 461, 537, 786, 1106, 1424, 1671
Bso31I	GGTCTC	3 cut(s)	1651, 1781, 1798
BsoBI	CYCGRG	2 cut(s)	2260, 2408
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	991, 2202, 2382
Bsp13I	TCCGGA	4 cut(s)	234, 308, 944, 967
Bsp19I	CCATGG	1 cut(s)	1836
BspANI	GGCC	8 cut(s)	315, 436, 461, 537, 786, 1106, 1424, 1671
BspCNI	CTCAG	4 cut(s)	240, 1462, 1565, 1596
BspEI	TCCGGA	4 cut(s)	234, 308, 944, 967
BspFNI	CGCG	4 cut(s)	540, 1427, 1490, 2235
BspMAI	CTGCAG	3 cut(s)	373, 391, 1894
BspMI	ACCTGC	2 cut(s)	394, 1024
BspPI	GGATC	5 cut(s)	226, 1304, 1356, 2046, 2103
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	5 cut(s)	1214, 1241, 1429, 1476, 2188
BspTNI	GGTCTC	3 cut(s)	1651, 1781, 1798
BsrBI	CCGCTC	1 cut(s)	2180
BsrDI	GCAATG	2 cut(s)	890, 1464
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	4 cut(s)	811, 1000, 1777, 1805
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	7 cut(s)	710, 1425, 1577, 1836, 2233, 2259, 2349
BssNI	GRCGYC	3 cut(s)	1242, 1574, 2189
BssT1I	CCWWGG	1 cut(s)	1836
Bst2UI	CCWGG	3 cut(s)	711, 1705, 1790
Bst4CI	ACNGT	2 cut(s)	16, 1326
Bst6I	CTCTTC	4 cut(s)	675, 1119, 1252, 1839
BstACI	GRCGYC	3 cut(s)	1242, 1574, 2189
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	2226
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	5 cut(s)	418, 1031, 1213, 1234, 1373
BstDEI	CTNAG	7 cut(s)	220, 248, 547, 901, 1449, 1552, 1604
BstDSI	CCRYGG	4 cut(s)	1425, 1836, 2233, 2349
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	5 cut(s)	348, 403, 432, 695, 1270
BstFNI	CGCG	4 cut(s)	540, 1427, 1490, 2235
BstH2I	RGCGCY	2 cut(s)	1245, 2192
BstHHI	GCGC	4 cut(s)	1244, 1270, 1501, 2191
BstMAI	GTCTC	7 cut(s)	1565, 1600, 1651, 1781, 1798, 2370, 2433
BstMCI	CGRYCG	2 cut(s)	437, 462
BstNI	CCWGG	3 cut(s)	711, 1705, 1790
BstNSI	RCATGY	2 cut(s)	679, 2158
BstPAI	GACNNNNGTC	1 cut(s)	2226
BstSCI	CCNGG	3 cut(s)	709, 1703, 1788
BstSFI	CTRYAG	4 cut(s)	139, 369, 387, 1890
BstSLI	GKGCMC	2 cut(s)	991, 2202
BstUI	CGCG	4 cut(s)	540, 1427, 1490, 2235
BstV2I	GAAGAC	2 cut(s)	969, 2297
BstX2I	RGATCY	2 cut(s)	231, 2051
BstXI	CCANNNNNNTGG	1 cut(s)	2182
BstYI	RGATCY	2 cut(s)	231, 2051
BstZI	CGGCCG	2 cut(s)	434, 459
BsuRI	GGCC	8 cut(s)	315, 436, 461, 537, 786, 1106, 1424, 1671
BtgI	CCRYGG	4 cut(s)	1425, 1836, 2233, 2349
BtgZI	GCGATG	2 cut(s)	185, 1755
BtrI	CACGTC	1 cut(s)	1042
BtsCI	GGATG	5 cut(s)	348, 403, 432, 695, 1270
BtsI	GCAGTG	2 cut(s)	991, 1141
BtsIMutI	CAGTG	2 cut(s)	991, 1141
BveI	ACCTGC	2 cut(s)	394, 1024
Cac8I	GCNNGC	5 cut(s)	418, 1031, 1213, 1234, 1373
CaiI	CAGNNNCTG	2 cut(s)	596, 1289
CfoI	GCGC	4 cut(s)	1244, 1270, 1501, 2191
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	503, 809, 1422, 2253, 2343
Cfr42I	CCGCGG	2 cut(s)	1428, 2236
CseI	GACGC	2 cut(s)	1496, 1582
CsiI	ACCWGGT	1 cut(s)	1788
Csp6I	GTAC	8 cut(s)	17, 63, 91, 955, 1003, 1435, 1732, 1852
CviQI	GTAC	8 cut(s)	17, 63, 91, 955, 1003, 1435, 1732, 1852
DdeI	CTNAG	7 cut(s)	220, 248, 547, 901, 1449, 1552, 1604
DinI	GGCGCC	2 cut(s)	1243, 2190
DrdI	GACNNNNNNGTC	1 cut(s)	1773
DseDI	GACNNNNNNGTC	1 cut(s)	1773
EaeI	YGGCCR	4 cut(s)	434, 459, 535, 784
EagI	CGGCCG	2 cut(s)	434, 459
Eam1104I	CTCTTC	4 cut(s)	675, 1119, 1252, 1839
EarI	CTCTTC	4 cut(s)	675, 1119, 1252, 1839
EciI	GGCGGA	5 cut(s)	267, 510, 738, 744, 2372
EclXI	CGGCCG	2 cut(s)	434, 459
Eco130I	CCWWGG	1 cut(s)	1836
Eco147I	AGGCCT	2 cut(s)	315, 1671
Eco24I	GRGCYC	1 cut(s)	2382
Eco31I	GGTCTC	3 cut(s)	1651, 1781, 1798
Eco32I	GATATC	1 cut(s)	2059
Eco47I	GGWCC	4 cut(s)	503, 809, 2253, 2343
Eco52I	CGGCCG	2 cut(s)	434, 459
Eco72I	CACGTG	1 cut(s)	2226
Eco88I	CYCGRG	2 cut(s)	2260, 2408
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRI	GAATTC	1 cut(s)	1087
EcoRII	CCWGG	3 cut(s)	709, 1703, 1788
EcoRV	GATATC	1 cut(s)	2059
EcoT14I	CCWWGG	1 cut(s)	1836
EcoT38I	GRGCYC	1 cut(s)	2382
EgeI	GGCGCC	2 cut(s)	1243, 2190
EheI	GGCGCC	2 cut(s)	1243, 2190
ErhI	CCWWGG	1 cut(s)	1836
Esp3I	CGTCTC	1 cut(s)	1565
FalI	AAGNNNNNCTT	4 cut(s)	622, 654, 2065, 2097
FaqI	GGGAC	3 cut(s)	100, 2266, 2356
FauI	CCCGC	2 cut(s)	1537, 2347
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	2 cut(s)	1174, 2324
FokI	GGATG	5 cut(s)	355, 390, 439, 682, 1277
FriOI	GRGCYC	1 cut(s)	2382
FspBI	CTAG	7 cut(s)	846, 1197, 1445, 1592, 1815, 1959, 2375
GlaI	GCGC	4 cut(s)	1243, 1269, 1500, 2190
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	2 cut(s)	630, 1765
HaeII	RGCGCY	2 cut(s)	1245, 2192
HaeIII	GGCC	8 cut(s)	315, 436, 461, 537, 786, 1106, 1424, 1671
HapII	CCGG	8 cut(s)	235, 309, 323, 417, 945, 968, 1474, 2391
HgaI	GACGC	2 cut(s)	1496, 1582
HhaI	GCGC	4 cut(s)	1244, 1270, 1501, 2191
Hin1I	GRCGYC	3 cut(s)	1242, 1574, 2189
Hin6I	GCGC	4 cut(s)	1242, 1268, 1499, 2189
HinP1I	GCGC	4 cut(s)	1242, 1268, 1499, 2189
HincII	GTYRAC	3 cut(s)	1175, 1393, 1690
HindII	GTYRAC	3 cut(s)	1175, 1393, 1690
HindIII	AAGCTT	1 cut(s)	1650
HinfI	GANTC	9 cut(s)	305, 375, 515, 526, 587, 619, 769, 1009, 1978
HpaI	GTTAAC	1 cut(s)	1393
HpaII	CCGG	8 cut(s)	235, 309, 323, 417, 945, 968, 1474, 2391
HphI	GGTGA	5 cut(s)	21, 778, 845, 1420, 2369
Hpy166II	GTNNAC	8 cut(s)	989, 1039, 1175, 1393, 1437, 1690, 2160, 2325
Hpy8I	GTNNAC	8 cut(s)	989, 1039, 1175, 1393, 1437, 1690, 2160, 2325
Hpy99I	CGWCG	2 cut(s)	1046, 2222
HpyCH4III	ACNGT	2 cut(s)	16, 1326
HpyCH4IV	ACGT	3 cut(s)	1041, 2225, 2336
HpyF3I	CTNAG	7 cut(s)	220, 248, 547, 901, 1449, 1552, 1604
HpySE526I	ACGT	3 cut(s)	1041, 2225, 2336
Hsp92I	GRCGYC	3 cut(s)	1242, 1574, 2189
HspAI	GCGC	4 cut(s)	1242, 1268, 1499, 2189
KasI	GGCGCC	2 cut(s)	1241, 2188
Kpn2I	TCCGGA	4 cut(s)	234, 308, 944, 967
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	850
KspAI	GTTAAC	1 cut(s)	1393
KspI	CCGCGG	2 cut(s)	1428, 2236
LmnI	GCTCC	4 cut(s)	687, 1205, 2385, 2396
LweI	GCATC	8 cut(s)	144, 454, 571, 1255, 1578, 1732, 1762, 2279
MabI	ACCWGGT	1 cut(s)	1788
MaeI	CTAG	7 cut(s)	846, 1197, 1445, 1592, 1815, 1959, 2375
MaeII	ACGT	3 cut(s)	1041, 2225, 2336
MaeIII	GTNAC	5 cut(s)	104, 1461, 1492, 1961, 2075
MbiI	CCGCTC	1 cut(s)	2180
MfeI	CAATTG	1 cut(s)	1151
MflI	RGATCY	2 cut(s)	231, 2051
MhlI	GDGCHC	3 cut(s)	991, 2202, 2382
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	9 cut(s)	73, 97, 361, 755, 1087, 1115, 1151, 1166, 1520
MluNI	TGGCCA	1 cut(s)	786
Mly113I	GGCGCC	2 cut(s)	1242, 2189
MlyI	GAGTC	3 cut(s)	384, 778, 1972
MmeI	TCCRAC	3 cut(s)	330, 1101, 2006
Mox20I	TGGCCA	1 cut(s)	786
MroI	TCCGGA	4 cut(s)	234, 308, 944, 967
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	6 cut(s)	360, 579, 840, 1190, 1392, 2455
MslI	CAYNNNNRTG	4 cut(s)	786, 1515, 2153, 2313
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	9 cut(s)	338, 593, 1211, 1221, 1289, 1427, 1515, 1889, 2235
MspI	CCGG	8 cut(s)	235, 309, 323, 417, 945, 968, 1474, 2391
MspR9I	CCNGG	3 cut(s)	711, 1705, 1790
MunI	CAATTG	1 cut(s)	1151
Mva1269I	GAATGC	1 cut(s)	2093
MvaI	CCWGG	3 cut(s)	711, 1705, 1790
MvnI	CGCG	4 cut(s)	540, 1427, 1490, 2235
NaeI	GCCGGC	1 cut(s)	418
NarI	GGCGCC	2 cut(s)	1242, 2189
NcoI	CCATGG	1 cut(s)	1836
NgoMIV	GCCGGC	1 cut(s)	416
NmeAIII	GCCGAG	3 cut(s)	412, 487, 1602
NmuCI	GTSAC	3 cut(s)	1461, 1961, 2075
NspI	RCATGY	2 cut(s)	679, 2158
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	1515
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	2 cut(s)	315, 1671
PciI	ACATGT	2 cut(s)	675, 2154
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 2333
PctI	GAATGC	1 cut(s)	2093
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	6 cut(s)	305, 515, 526, 587, 619, 1009
PleI	GAGTC	3 cut(s)	383, 777, 1972
PluTI	GGCGCC	2 cut(s)	1245, 2192
PmaCI	CACGTG	1 cut(s)	2226
PmlI	CACGTG	1 cut(s)	2226
PpsI	GAGTC	3 cut(s)	383, 777, 1972
Ppu21I	YACGTR	1 cut(s)	2226
PscI	ACATGT	2 cut(s)	675, 2154
PshAI	GACNNNNGTC	1 cut(s)	2226
PshBI	ATTAAT	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	2333
Psp1406I	AACGTT	1 cut(s)	2336
Psp6I	CCWGG	3 cut(s)	709, 1703, 1788
PspCI	CACGTG	1 cut(s)	2226
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	3 cut(s)	709, 1703, 1788
PspPI	GGNCC	5 cut(s)	503, 809, 1422, 2253, 2343
PstI	CTGCAG	3 cut(s)	373, 391, 1894
PstNI	CAGNNNCTG	2 cut(s)	596, 1289
PsuI	RGATCY	2 cut(s)	231, 2051
PvuII	CAGCTG	5 cut(s)	338, 593, 1211, 1515, 1889
RsaI	GTAC	8 cut(s)	18, 64, 92, 956, 1004, 1436, 1733, 1853
RsaNI	GTAC	8 cut(s)	17, 63, 91, 955, 1003, 1435, 1732, 1852
RseI	CAYNNNNRTG	4 cut(s)	786, 1515, 2153, 2313
SacII	CCGCGG	2 cut(s)	1428, 2236
SalI	GTCGAC	1 cut(s)	1173
SaqAI	TTAA	6 cut(s)	360, 579, 840, 1190, 1392, 2455
Sau96I	GGNCC	5 cut(s)	503, 809, 1422, 2253, 2343
SbfI	CCTGCAGG	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	3 cut(s)	384, 778, 1972
ScrFI	CCNGG	3 cut(s)	711, 1705, 1790
SdaI	CCTGCAGG	1 cut(s)	373
SduI	GDGCHC	3 cut(s)	991, 2202, 2382
SexAI	ACCWGGT	1 cut(s)	1788
SfaNI	GCATC	8 cut(s)	144, 454, 571, 1255, 1578, 1732, 1762, 2279
SfcI	CTRYAG	4 cut(s)	139, 369, 387, 1890
SfoI	GGCGCC	2 cut(s)	1243, 2190
Sfr303I	CCGCGG	2 cut(s)	1428, 2236
SfuI	TTCGAA	1 cut(s)	159
SgrBI	CCGCGG	2 cut(s)	1428, 2236
SinI	GGWCC	4 cut(s)	503, 809, 2253, 2343
SmiMI	CAYNNNNRTG	4 cut(s)	786, 1515, 2153, 2313
SmlI	CTYRAG	2 cut(s)	1081, 1696
SmoI	CTYRAG	2 cut(s)	1081, 1696
SpeI	ACTAGT	1 cut(s)	1958
Sse8387I	CCTGCAGG	1 cut(s)	373
Sse9I	AATT	9 cut(s)	73, 97, 361, 755, 1087, 1115, 1151, 1166, 1520
SseBI	AGGCCT	2 cut(s)	315, 1671
SspDI	GGCGCC	2 cut(s)	1241, 2188
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	7 cut(s)	846, 1197, 1445, 1592, 1815, 1959, 2375
StuI	AGGCCT	2 cut(s)	315, 1671
StyD4I	CCNGG	3 cut(s)	709, 1703, 1788
StyI	CCWWGG	1 cut(s)	1836
TaaI	ACNGT	2 cut(s)	16, 1326
TaiI	ACGT	3 cut(s)	1044, 2228, 2339
TaqI	TCGA	7 cut(s)	159, 264, 572, 1174, 1299, 1351, 1822
TasI	AATT	9 cut(s)	73, 97, 361, 755, 1087, 1115, 1151, 1166, 1520
TatI	WGTACW	4 cut(s)	16, 90, 954, 1002
TfiI	GAWTC	6 cut(s)	305, 515, 526, 587, 619, 1009
Tru1I	TTAA	6 cut(s)	360, 579, 840, 1190, 1392, 2455
Tru9I	TTAA	6 cut(s)	360, 579, 840, 1190, 1392, 2455
TscAI	CASTG	2 cut(s)	991, 1141
TseFI	GTSAC	3 cut(s)	1461, 1961, 2075
Tsp45I	GTSAC	3 cut(s)	1461, 1961, 2075
TspRI	CASTG	2 cut(s)	991, 1141
VneI	GTGCAC	1 cut(s)	987
VpaK11BI	GGWCC	4 cut(s)	503, 809, 2253, 2343
VspI	ATTAAT	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	1 cut(s)	1087
XceI	RCATGY	2 cut(s)	679, 2158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2182
XmiI	GTMKAC	2 cut(s)	1174, 2324
XspI	CTAG	7 cut(s)	846, 1197, 1445, 1592, 1815, 1959, 2375
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.