Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

23618065 .. 23625259

Gene Structure 7195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1271200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGGCATAGCAACTTTACCCCAACTCCCACCACCGCCACCAAAGGGAAATCTTCATCACCACCACCACTCAATTGATTCAGAAAACTACTACAATCCTCTTAATTCTATGTCCCAAGACTACCACCAAGGCATCTTTACCTTCTCCAATGGCTTCGAGAGATCTGCTATGACAAGCCACCAAGAACAACAGCGGCAGCAACAACACCACTTGGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGCTTCGAAACCCCTGCCCCGTCGCCACTTGTTGGCCTAGACGAGGAAGAATCCAGTGGCCTCCCAGCATATGAAACCGCCGGCATGTTGTCTGAGATGTTCAATTACCCTCCAGGCAGCGGCCCTGCTGGGGCTGCCGAACTACTAGGGCATCCAATGTCAACCAACTATCGGATGATGCCTCAGCCGCAGCAGACTGCTGCCGTGTCTGCTGCGGCCGACTGGTACGGAAGAGTGGGTGGTGGTGGGCTGGGACCATTGGGAGATTTAAAAAATCAGCACCATCCCCAGATTTCAACAATTAATGCAGACTCAGCGGCAGCCATGCAGCTTTTCCTAATGAACCCATCACAACCAAGATCGCCTTCTCCTCCTCCTTCTCACACCACTTCTTCCACCCTTCACATGTTGCTTCCAAACCCATCCACCACCACCACCAATTCACTCCAAGGGTTTGCCGCCGCGTCCGGAGGAGCGGCTTTTGGTCAATTCACTTGGGTTCCTGAGAGTCATCAAGGCCATGAAGAAGGAGGCAATACCGCTGGCGGCGGTGGTGAAATTGGTGGGGTTGTGGAAGGCCAAGGACTTTCATTGTCTCTATCAACTTCTTTGCAGCACTTGGAGGCAGCAAAAGCTAACGAATTCGGGATGGGATCAGAGAGTGCTAGTAGCTTATTGTATTACAATAATCAAGGAGATCATCAACATCAAGGGTCTAATACTCAATACAAGAATTTGGTTTCCTACCATCATCAGGCATTGCATAGTTTGCAGCAAGGTGGCGTTGTAGGCGGTCATCATGTCGGTTTCGGGTCGTCGTCATCATCGTTCGGAGTTGTGAACGTGTTGAGGAACTCCAAGTATGTGAAGGCTGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTAGGGAGGGGTCAGCTCAAGAAGAGCAAGTTTGGTGGTAGTACTAGTGGTAGGCATAACACCACCACAAACCCTAGTTCCAATCCAGCTGGCACTAGTGGCAGCGGCGGTGGTACCTCTTCATCTTTATCAAAGGATGTGCCTCCGTTATCAGCCGCTGATAGGATTGAACATCAACGAAGGAAAGTCAAACTACTGTCCATGCTTGATGAGGTGGATCGAAGGTACAATCACTACTGCGAACAAATGCAGATGGTGGTAAACGCATTCGATCTGGTGATGGGTTTCGGAGCGGCGGTGCCGTACACAGCCTTAGCTCAAAAGGCCATGTCAAGACATTTTCGGTGCCTAAAGGACACGATCACGGCACAGTTGAAGCACAGCTGTGAGCTACTTGGAGAGAAAGATGGTGCAGGAACCTCAGGAATAACCAAAGGAGAGACCCCAAGGCTGAAGCTTCTAGAGCAAAGCCTAAGACAGCAAAGAGCATTTCATCAAATGGGCATGATGGAACAAGAAGCTTGGAGGCCCCAACGGGGCCTGCCGGAACGCTCAGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTTCACCCGTATCCAAGCGATGCTGATAAGCATCTGTTGGCTCGACAGACTGGACTATCCAGAAATCAGGTCTCAAATTGGTTCATAAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGAAGAAGAAGTAGGAGGAGGAGGAGGAGGAGGAGCTGTTAGTGCAACAGCAGATCAAGAGAGAGAACGTAACAACAATGCTGGCTTCTCTGCACAAACTCCAACGCCTACAATGACAACTGCCACGACACCACCACCAACAACAAATTCGCCAACAGGCAAAAGATCCGATATCAATGCCTCTGAAAACGACTCTTCACTCATAGCAATCAATAGGCATCAGCAACAGCAGCAGCACCACCCCATGATGGCCACCACCACCTCCTCTGCGGTGGCGCCGCCTGCTTCCCAGTGCTTCACCGCCGCGGCTGCCGACGACACGTGTCGCAGCTATGGGACCACCTCGGGTAATGCAAATATTGCAGCTCATCATGATCATCCAAATAGTAGTAATATCGGTTCTTCTAAGCTTACAAGCTTCGGGACCACCACGGCAGCTGGTGACGTGTCACTCACTCTAGGGCTCCGCCATGCTGGTGGTGGTGGTGGAAGCAATATGCCCGACAAGAATTCTTCTTCTTTCTCCATTAGGGACTTCGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

815

Amino Acids

87.18

Weight (kDa)

6.53

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	365 - 506	9.3e-47	Associated with HOX
Homeobox_KN	PF05920	576 - 615	5.9e-19	Homeobox KN domain
Homeodomain	PF00046	583 - 615	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1265
AccB1I	GGYRCC	4 cut(s)	1265, 1450, 1497, 2170
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccBSI	CCGCTC	2 cut(s)	725, 1445
AccII	CGCG	2 cut(s)	713, 2201
AccIII	TCCGGA	2 cut(s)	225, 716
AclWI	GGATC	4 cut(s)	217, 910, 1377, 2055
AcoI	YGGCCR	2 cut(s)	465, 2145
AcsI	RAATTY	4 cut(s)	890, 982, 2041, 2404
AcuI	CTGAAG	1 cut(s)	1625
AcvI	CACGTG	1 cut(s)	2217
AcyI	GRCGYC	1 cut(s)	2171
AfaI	GTAC	6 cut(s)	476, 1195, 1267, 1379, 1457, 1874
AflIII	ACRYGT	5 cut(s)	654, 1092, 2214, 2216, 2340
AgsI	TTSAA	4 cut(s)	352, 546, 1322, 1528
AhlI	ACTAGT	2 cut(s)	1196, 1247
AjiI	CACGTC	1 cut(s)	2341
AjnI	CCWGG	2 cut(s)	361, 1724
AjuI	GAANNNNNNNTTGG	4 cut(s)	598, 630, 2026, 2058
AleI	CACNNNNGTG	1 cut(s)	1536
Alw26I	GTCTC	3 cut(s)	849, 1586, 1819
AlwI	GGATC	4 cut(s)	217, 910, 1377, 2055
AlwNI	CAGNNNCTG	1 cut(s)	1310
Ama87I	CYCGRG	1 cut(s)	2239
Aor13HI	TCCGGA	2 cut(s)	225, 716
ApoI	RAATTY	4 cut(s)	890, 982, 2041, 2404
AseI	ATTAAT	1 cut(s)	552
Asp718I	GGTACC	1 cut(s)	1265
AspLEI	GCGC	1 cut(s)	2173
AspS9I	GGNCC	6 cut(s)	371, 503, 1680, 1690, 2232, 2319
AsuHPI	GGTGA	6 cut(s)	50, 815, 1441, 1739, 2185, 2348
AsuII	TTCGAA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	2239
AvaII	GGWCC	3 cut(s)	503, 2232, 2319
AxyI	CCTNAGG	1 cut(s)	1573
BalI	TGGCCA	1 cut(s)	2147
BanI	GGYRCC	4 cut(s)	1265, 1450, 1497, 2170
BanII	GRGCYC	1 cut(s)	2361
BbrPI	CACGTG	1 cut(s)	2217
BbvCI	CCTCAGC	2 cut(s)	239, 432
BceAI	ACGGC	4 cut(s)	437, 1438, 1533, 2343
BcgI	CGANNNNNNTGC	6 cut(s)	146, 180, 245, 279, 2054, 2088
BciT130I	CCWGG	2 cut(s)	363, 1726
BciVI	GTATCC	1 cut(s)	1764
BclI	TGATCA	1 cut(s)	2269
BcoDI	GTCTC	3 cut(s)	849, 1586, 1819
BcuI	ACTAGT	2 cut(s)	1196, 1247
BfaI	CTAG	9 cut(s)	287, 395, 915, 1197, 1227, 1248, 1613, 1836, 2354
BfoI	RGCGCY	1 cut(s)	2174
BfuI	GTATCC	1 cut(s)	1764
BglII	AGATCT	1 cut(s)	161
BmcAI	AGTACT	1 cut(s)	1195
Bme1390I	CCNGG	2 cut(s)	363, 1726
Bme18I	GGWCC	3 cut(s)	503, 2232, 2319
BmeT110I	CYCGRG	1 cut(s)	2239
BmgBI	CACGTC	1 cut(s)	2341
BmgT120I	GGNCC	6 cut(s)	371, 503, 1680, 1690, 2232, 2319
BmrFI	CCNGG	2 cut(s)	363, 1726
BmrI	ACTGGG	1 cut(s)	2179
BmsI	GCATC	6 cut(s)	141, 409, 417, 1753, 1783, 2122
BmuI	ACTGGG	1 cut(s)	2179
BoxI	GACNNNNGTC	1 cut(s)	2217
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	3 cut(s)	239, 432, 1465
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	1154, 1738
BsaAI	YACGTR	1 cut(s)	2217
BsaBI	GATNNNNATC	1 cut(s)	1773
BsaHI	GRCGYC	1 cut(s)	2171
BsaI	GGTCTC	2 cut(s)	1586, 1819
BsaJI	CCNNGG	8 cut(s)	127, 697, 829, 1598, 1857, 2199, 2238, 2325
BsaWI	WCCGGW	2 cut(s)	225, 716
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 1434, 1464, 1917, 1947
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	4 cut(s)	303, 476, 1798, 2185
Bse21I	CCTNAGG	1 cut(s)	1573
Bse3DI	GCAATG	1 cut(s)	1007
Bse8I	GATNNNNATC	1 cut(s)	1773
BseAI	TCCGGA	2 cut(s)	225, 716
BseBI	CCWGG	2 cut(s)	363, 1726
BseDI	CCNNGG	8 cut(s)	127, 697, 829, 1598, 1857, 2199, 2238, 2325
BseGI	GGATG	7 cut(s)	400, 429, 532, 671, 903, 1294, 2272
BseJI	GATNNNNATC	1 cut(s)	1773
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	7 cut(s)	230, 333, 446, 576, 744, 1587, 1719
BseNI	ACTGG	4 cut(s)	303, 476, 1798, 2185
BseX3I	CGGCCG	1 cut(s)	465
BseYI	CCCAGC	3 cut(s)	313, 377, 499
BsgI	GTGCAG	2 cut(s)	1584, 1971
Bsh1236I	CGCG	2 cut(s)	713, 2201
Bsh1285I	CGRYCG	1 cut(s)	468
BshNI	GGYRCC	4 cut(s)	1265, 1450, 1497, 2170
BsiEI	CGRYCG	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	2239
BsiSI	CCGG	4 cut(s)	226, 330, 717, 1697
BslFI	GGGAC	5 cut(s)	97, 516, 2245, 2332, 2441
BsmAI	GTCTC	3 cut(s)	849, 1586, 1819
BsmFI	GGGAC	5 cut(s)	97, 516, 2245, 2332, 2441
BsmI	GAATGC	1 cut(s)	1418
Bso31I	GGTCTC	2 cut(s)	1586, 1819
BsoBI	CYCGRG	1 cut(s)	2239
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	2361
Bsp13I	TCCGGA	2 cut(s)	225, 716
Bsp19I	CCATGG	1 cut(s)	1857
BspCNI	CTCAG	7 cut(s)	231, 334, 445, 575, 745, 1586, 1718
BspEI	TCCGGA	2 cut(s)	225, 716
BspFNI	CGCG	2 cut(s)	713, 2201
BspHI	TCATGA	1 cut(s)	2266
BspPI	GGATC	4 cut(s)	217, 910, 1377, 2055
BspQI	GCTCTTC	1 cut(s)	1169
BspT104I	TTCGAA	1 cut(s)	255
BspT107I	GGYRCC	4 cut(s)	1265, 1450, 1497, 2170
BspTNI	GGTCTC	2 cut(s)	1586, 1819
BsrBI	CCGCTC	2 cut(s)	725, 1445
BsrDI	GCAATG	1 cut(s)	1007
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	4 cut(s)	303, 476, 1798, 2185
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	8 cut(s)	127, 697, 829, 1598, 1857, 2199, 2238, 2325
BssNI	GRCGYC	1 cut(s)	2171
BssT1I	CCWWGG	5 cut(s)	127, 697, 829, 1598, 1857
Bst2UI	CCWGG	2 cut(s)	363, 1726
Bst4CI	ACNGT	2 cut(s)	1350, 1524
Bst6I	CTCTTC	6 cut(s)	475, 1134, 1169, 1276, 1860, 2095
BstACI	GRCGYC	1 cut(s)	2171
BstAPI	GCANNNNNTGC	2 cut(s)	1018, 2255
BstBAI	YACGTR	1 cut(s)	2217
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	6 cut(s)	331, 793, 1243, 1694, 1978, 2178
BstDSI	CCRYGG	3 cut(s)	1857, 2199, 2325
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	7 cut(s)	400, 429, 532, 671, 903, 1294, 2272
BstFNI	CGCG	2 cut(s)	713, 2201
BstH2I	RGCGCY	1 cut(s)	2174
BstHHI	GCGC	1 cut(s)	2173
BstMAI	GTCTC	3 cut(s)	849, 1586, 1819
BstMCI	CGRYCG	1 cut(s)	468
BstNI	CCWGG	2 cut(s)	363, 1726
BstNSI	RCATGY	2 cut(s)	337, 658
BstPAI	GACNNNNGTC	1 cut(s)	2217
BstSCI	CCNGG	2 cut(s)	361, 1724
BstUI	CGCG	2 cut(s)	713, 2201
BstX2I	RGATCY	3 cut(s)	161, 222, 2060
BstXI	CCANNNNNNTGG	1 cut(s)	2372
BstYI	RGATCY	3 cut(s)	161, 222, 2060
BstZI	CGGCCG	1 cut(s)	465
Bsu36I	CCTNAGG	1 cut(s)	1573
BsuI	GTATCC	1 cut(s)	1764
BtgI	CCRYGG	3 cut(s)	1857, 2199, 2325
BtgZI	GCGATG	1 cut(s)	1776
BtrI	CACGTC	1 cut(s)	2341
BtsCI	GGATG	7 cut(s)	400, 429, 532, 671, 903, 1294, 2272
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	3 cut(s)	310, 1156, 2192
Cac8I	GCNNGC	6 cut(s)	331, 793, 1243, 1694, 1978, 2178
CaiI	CAGNNNCTG	1 cut(s)	1310
CciI	TCATGA	1 cut(s)	2266
CfoI	GCGC	1 cut(s)	2173
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	6 cut(s)	371, 503, 1680, 1690, 2232, 2319
Cfr42I	CCGCGG	1 cut(s)	2202
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	6 cut(s)	475, 1194, 1266, 1378, 1456, 1873
CspCI	CAANNNNNGTGG	2 cut(s)	1168, 1203
CviQI	GTAC	6 cut(s)	475, 1194, 1266, 1378, 1456, 1873
DinI	GGCGCC	1 cut(s)	2172
DraI	TTTAAA	1 cut(s)	519
EaeI	YGGCCR	2 cut(s)	465, 2145
EagI	CGGCCG	1 cut(s)	465
Eam1104I	CTCTTC	6 cut(s)	475, 1134, 1169, 1276, 1860, 2095
EarI	CTCTTC	6 cut(s)	475, 1134, 1169, 1276, 1860, 2095
EciI	GGCGGA	1 cut(s)	2351
EclXI	CGGCCG	1 cut(s)	465
Eco130I	CCWWGG	5 cut(s)	127, 697, 829, 1598, 1857
Eco24I	GRGCYC	1 cut(s)	2361
Eco31I	GGTCTC	2 cut(s)	1586, 1819
Eco32I	GATATC	1 cut(s)	2068
Eco47I	GGWCC	3 cut(s)	503, 2232, 2319
Eco52I	CGGCCG	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	1625
Eco72I	CACGTG	1 cut(s)	2217
Eco81I	CCTNAGG	1 cut(s)	1573
Eco88I	CYCGRG	1 cut(s)	2239
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	2 cut(s)	1680, 1690
EcoRI	GAATTC	2 cut(s)	890, 2404
EcoRII	CCWGG	2 cut(s)	361, 1724
EcoRV	GATATC	1 cut(s)	2068
EcoT14I	CCWWGG	5 cut(s)	127, 697, 829, 1598, 1857
EcoT38I	GRGCYC	1 cut(s)	2361
EgeI	GGCGCC	1 cut(s)	2172
EheI	GGCGCC	1 cut(s)	2172
ErhI	CCWWGG	5 cut(s)	127, 697, 829, 1598, 1857
FalI	AAGNNNNNCTT	2 cut(s)	598, 630
FaqI	GGGAC	5 cut(s)	97, 516, 2245, 2332, 2441
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	2269
FokI	GGATG	7 cut(s)	387, 436, 519, 658, 910, 1301, 2259
FriOI	GRGCYC	1 cut(s)	2361
FspBI	CTAG	9 cut(s)	287, 395, 915, 1197, 1227, 1248, 1613, 1836, 2354
GlaI	GCGC	1 cut(s)	2172
GsaI	CCCAGC	3 cut(s)	317, 381, 503
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	2174
HapII	CCGG	4 cut(s)	226, 330, 717, 1697
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	1 cut(s)	2173
Hin1I	GRCGYC	1 cut(s)	2171
Hin6I	GCGC	1 cut(s)	2171
HinP1I	GCGC	1 cut(s)	2171
HincII	GTYRAC	2 cut(s)	411, 1711
HindII	GTYRAC	2 cut(s)	411, 1711
HindIII	AAGCTT	4 cut(s)	1607, 1671, 2303, 2311
HinfI	GANTC	5 cut(s)	77, 299, 560, 757, 2087
HpaII	CCGG	4 cut(s)	226, 330, 717, 1697
HphI	GGTGA	6 cut(s)	50, 815, 1441, 1739, 2185, 2348
Hpy166II	GTNNAC	5 cut(s)	411, 1090, 1414, 1458, 1711
Hpy188I	TCNGA	8 cut(s)	82, 343, 423, 907, 1082, 1442, 2065, 2080
Hpy8I	GTNNAC	5 cut(s)	411, 1090, 1414, 1458, 1711
Hpy99I	CGWCG	3 cut(s)	274, 1069, 2213
HpyAV	CCTTC	9 cut(s)	151, 624, 636, 659, 770, 818, 1111, 1326, 1368
HpyCH4III	ACNGT	2 cut(s)	1350, 1524
HpyCH4IV	ACGT	4 cut(s)	1092, 1963, 2216, 2340
HpySE526I	ACGT	4 cut(s)	1092, 1963, 2216, 2340
Hsp92I	GRCGYC	1 cut(s)	2171
HspAI	GCGC	1 cut(s)	2171
KasI	GGCGCC	1 cut(s)	2170
Kpn2I	TCCGGA	2 cut(s)	225, 716
KpnI	GGTACC	1 cut(s)	1269
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	2269
KspI	CCGCGG	1 cut(s)	2202
LguI	GCTCTTC	1 cut(s)	1169
LmnI	GCTCC	4 cut(s)	722, 1442, 1928, 2364
LweI	GCATC	6 cut(s)	141, 409, 417, 1753, 1783, 2122
MaeI	CTAG	9 cut(s)	287, 395, 915, 1197, 1227, 1248, 1613, 1836, 2354
MaeII	ACGT	4 cut(s)	1092, 1963, 2216, 2340
MaeIII	GTNAC	3 cut(s)	1964, 2336, 2343
MbiI	CCGCTC	2 cut(s)	725, 1445
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	3 cut(s)	161, 222, 2060
MhlI	GDGCHC	1 cut(s)	2361
MlsI	TGGCCA	1 cut(s)	2147
MluNI	TGGCCA	1 cut(s)	2147
Mly113I	GGCGCC	1 cut(s)	2171
MlyI	GAGTC	3 cut(s)	554, 766, 2081
MmeI	TCCRAC	2 cut(s)	1116, 2021
Mox20I	TGGCCA	1 cut(s)	2147
MroI	TCCGGA	2 cut(s)	225, 716
MroNI	GCCGGC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	2147
MseI	TTAA	4 cut(s)	102, 518, 552, 2443
MslI	CAYNNNNRTG	2 cut(s)	1536, 2370
Msp20I	TGGCCA	1 cut(s)	2147
MspI	CCGG	4 cut(s)	226, 330, 717, 1697
MspR9I	CCNGG	2 cut(s)	363, 1726
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	1418
MvaI	CCWGG	2 cut(s)	363, 1726
MvnI	CGCG	2 cut(s)	713, 2201
NaeI	GCCGGC	1 cut(s)	331
NarI	GGCGCC	1 cut(s)	2171
NcoI	CCATGG	1 cut(s)	1857
NdeI	CATATG	1 cut(s)	319
NgoMIV	GCCGGC	1 cut(s)	329
NmuCI	GTSAC	2 cut(s)	2336, 2343
NspI	RCATGY	2 cut(s)	337, 658
NspV	TTCGAA	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	1536
PagI	TCATGA	1 cut(s)	2266
PciI	ACATGT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	1169
PcsI	WCGNNNNNNNCGW	1 cut(s)	1073
PctI	GAATGC	1 cut(s)	1418
PdiI	GCCGGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	77, 299
PflMI	CCANNNNNTGG	1 cut(s)	281
PleI	GAGTC	3 cut(s)	554, 765, 2081
PluTI	GGCGCC	1 cut(s)	2174
PmaCI	CACGTG	1 cut(s)	2217
PmlI	CACGTG	1 cut(s)	2217
PpsI	GAGTC	3 cut(s)	554, 765, 2081
Ppu21I	YACGTR	1 cut(s)	2217
PscI	ACATGT	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	2217
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	361, 1724
PspCI	CACGTG	1 cut(s)	2217
PspFI	CCCAGC	3 cut(s)	313, 377, 499
PspGI	CCWGG	2 cut(s)	361, 1724
PspPI	GGNCC	6 cut(s)	371, 503, 1680, 1690, 2232, 2319
PsrI	GAACNNNNNNTAC	2 cut(s)	2278, 2310
PstNI	CAGNNNCTG	1 cut(s)	1310
PsuI	RGATCY	3 cut(s)	161, 222, 2060
PvuII	CAGCTG	3 cut(s)	1241, 1536, 2333
RsaI	GTAC	6 cut(s)	476, 1195, 1267, 1379, 1457, 1874
RsaNI	GTAC	6 cut(s)	475, 1194, 1266, 1378, 1456, 1873
RseI	CAYNNNNRTG	2 cut(s)	1536, 2370
SacII	CCGCGG	1 cut(s)	2202
SapI	GCTCTTC	1 cut(s)	1169
SaqAI	TTAA	4 cut(s)	102, 518, 552, 2443
Sau96I	GGNCC	6 cut(s)	371, 503, 1680, 1690, 2232, 2319
ScaI	AGTACT	1 cut(s)	1195
SchI	GAGTC	3 cut(s)	554, 766, 2081
ScrFI	CCNGG	2 cut(s)	363, 1726
SduI	GDGCHC	1 cut(s)	2361
SfaNI	GCATC	6 cut(s)	141, 409, 417, 1753, 1783, 2122
SfoI	GGCGCC	1 cut(s)	2172
Sfr303I	CCGCGG	1 cut(s)	2202
SfuI	TTCGAA	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	2202
SinI	GGWCC	3 cut(s)	503, 2232, 2319
SmiMI	CAYNNNNRTG	2 cut(s)	1536, 2370
SmlI	CTYRAG	2 cut(s)	1169, 1717
SmoI	CTYRAG	2 cut(s)	1169, 1717
SpeI	ACTAGT	2 cut(s)	1196, 1247
SspDI	GGCGCC	1 cut(s)	2170
SspI	AATATT	1 cut(s)	2254
SspMI	CTAG	9 cut(s)	287, 395, 915, 1197, 1227, 1248, 1613, 1836, 2354
StyD4I	CCNGG	2 cut(s)	361, 1724
StyI	CCWWGG	5 cut(s)	127, 697, 829, 1598, 1857
TaaI	ACNGT	2 cut(s)	1350, 1524
TaiI	ACGT	4 cut(s)	1095, 1966, 2219, 2343
TaqI	TCGA	6 cut(s)	156, 255, 1372, 1422, 1786, 1843
TatI	WGTACW	1 cut(s)	1193
TfiI	GAWTC	2 cut(s)	77, 299
Tru1I	TTAA	4 cut(s)	102, 518, 552, 2443
Tru9I	TTAA	4 cut(s)	102, 518, 552, 2443
TscAI	CASTG	3 cut(s)	310, 1156, 2192
TseFI	GTSAC	2 cut(s)	2336, 2343
Tsp45I	GTSAC	2 cut(s)	2336, 2343
TspDTI	ATGAA	9 cut(s)	44, 336, 605, 786, 828, 1263, 1634, 1816, 1905
TspGWI	ACGGA	2 cut(s)	492, 1287
TspRI	CASTG	3 cut(s)	310, 1156, 2192
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	503, 2232, 2319
VspI	ATTAAT	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	4 cut(s)	890, 982, 2041, 2404
XbaI	TCTAGA	1 cut(s)	1612
XceI	RCATGY	2 cut(s)	337, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2372
XspI	CTAG	9 cut(s)	287, 395, 915, 1197, 1227, 1248, 1613, 1836, 2354
ZrmI	AGTACT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.