Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

8966037 .. 8967077

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGCATAGTAACTTTACCGCCACTCCCACCACCGCCACCAAAGGGTAATCTTCATCACCGTCACCACTCAATTGATTCAGAAAACTACTCCAATCCTCCTAATTCTATGTCCCAAGACTACCACCAAGGCATCTTCACCTTCTCCAATGGCTTCGAGAGATCGGCTATGACAACTCACCAAGAACAACAGCAGCAGCAGCAGCAACACCACTTGGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGCTTCGAAACCCCTCCCCCGCCGCCACTGGCTGGCCTAAACGAGGAAGAATCCAGTGGCCTCCCAGCATACGAAACCGCTGGGATGTTGTCTGAGATGTTCAATTACCCTCCAGGCGGTGGCCCTGTTGGGGCCGCCGAACTGCTAGAGCATCCAATGTCAGCCAATTATCGGATGATACCTCGGCCGCAGCAGGCTGCAGCAGTGTCTGCTGCGGCTGACTGGTACGGAAGAGTGGGTGGTGGTGGACTGGGACCATTGGGAGATTCAAAAAATCAGCACCATCATCAGATTTCAACAATTAATGCAGACTCAGCGGCAGCCATGCAGCTTTTTCTAATGAACCCATCACAACCAAGATCGCCTTCTCCTCCTCCTTCTCACACCACTTCTTCCACCCTTCACATGTTGCTTCCAAACCCTTCCACCACCACCAATTCACTCCAAGGGTTTGCTGCTGCATCCGGTGGAGGGGGCTTTGGTCAATTCACTTGGGTCCCTGAGAGTCATCAAGGCCATGAAGCAGGAGGCAATACCGCTGGCGGCGGTGGTGAAATTGGTGGGGTTGTGGAAGGCCAAGGACTTTCATTGTCTCTATCGACTTCTTTGCAGCACTTGGAGGCAGCAAAGGCTGAGGAATTCAGGATGGGATCAGATAGTGCGAGTGGCTTGCTGTATTACAATAATCAAGGATCGATCATCAACATCAAGGGTCTAATCCTCAGTATAAGAATTTGGGTTCCCATCATCATCAGGCATTGCATAGTTTGCAGCAAGGCGGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

347

Amino Acids

36.83

Weight (kDa)

6.2

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	284, 371
AccIII	TCCGGA	1 cut(s)	228
AclWI	GGATC	3 cut(s)	220, 910, 952
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	890, 984
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	8 cut(s)	44, 284, 295, 368, 371, 382, 423, 723
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	3 cut(s)	355, 522, 549
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	2 cut(s)	241, 583
AluI	AGCT	2 cut(s)	241, 583
Alw26I	GTCTC	1 cut(s)	849
AlwI	GGATC	3 cut(s)	220, 910, 952
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	7 cut(s)	286, 310, 373, 384, 437, 766, 826
ApoI	RAATTY	2 cut(s)	890, 984
AseI	ATTAAT	1 cut(s)	555
AspS9I	GGNCC	4 cut(s)	374, 384, 506, 748
AsuHPI	GGTGA	5 cut(s)	50, 56, 130, 170, 815
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	506, 748
BbvCI	CCTCAGC	2 cut(s)	242, 885
BccI	CCATC	4 cut(s)	543, 607, 892, 1004
BcgI	CGANNNNNNTGC	4 cut(s)	841, 875, 904, 938
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	506, 748
BmgT120I	GGNCC	4 cut(s)	374, 384, 506, 748
BmiI	GGNNCC	5 cut(s)	385, 507, 749, 750, 993
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	3 cut(s)	141, 412, 722
BmuI	ACTGGG	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	2 cut(s)	242, 885
Bpu14I	TTCGAA	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	947
BsaJI	CCNNGG	4 cut(s)	127, 434, 697, 829
BsaWI	WCCGGW	2 cut(s)	228, 716
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	8 cut(s)	44, 284, 295, 368, 371, 382, 423, 723
Bse1I	ACTGG	4 cut(s)	285, 306, 479, 507
Bse3DI	GCAATG	1 cut(s)	1009
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	947
BseDI	CCNNGG	4 cut(s)	127, 434, 697, 829
BseGI	GGATG	5 cut(s)	342, 403, 432, 713, 903
BseLI	CCNNNNNNNGG	8 cut(s)	44, 284, 295, 368, 371, 382, 423, 723
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	6 cut(s)	233, 336, 579, 744, 876, 988
BseNI	ACTGG	4 cut(s)	285, 306, 479, 507
BseRI	GAGGAG	2 cut(s)	612, 615
BseX3I	CGGCCG	1 cut(s)	437
BseYI	CCCAGC	2 cut(s)	316, 332
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	7 cut(s)	288, 312, 375, 386, 439, 768, 828
BshVI	ATCGAT	1 cut(s)	947
BsiEI	CGRYCG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	229, 717
BslFI	GGGAC	3 cut(s)	97, 519, 734
BslI	CCNNNNNNNGG	8 cut(s)	44, 284, 295, 368, 371, 382, 423, 723
BsmAI	GTCTC	1 cut(s)	849
BsmFI	GGGAC	3 cut(s)	97, 519, 734
BsnI	GGCC	7 cut(s)	288, 312, 375, 386, 439, 768, 828
Bsp119I	TTCGAA	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
BspANI	GGCC	7 cut(s)	288, 312, 375, 386, 439, 768, 828
BspCNI	CTCAG	6 cut(s)	234, 337, 578, 745, 877, 987
BspDI	ATCGAT	1 cut(s)	947
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	385, 507, 749, 750, 993
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	220, 910, 952
BspT104I	TTCGAA	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	1009
BsrI	ACTGG	4 cut(s)	285, 306, 479, 507
BssECI	CCNNGG	4 cut(s)	127, 434, 697, 829
BssMI	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
BssT1I	CCWWGG	3 cut(s)	127, 697, 829
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	478
BstAPI	GCANNNNNTGC	2 cut(s)	461, 1020
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	286, 447, 793, 923
BstDEI	CTNAG	6 cut(s)	242, 345, 565, 753, 885, 974
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	5 cut(s)	342, 403, 432, 713, 903
BstKTI	GATC	6 cut(s)	164, 228, 614, 905, 947, 951
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	7 cut(s)	199, 202, 247, 461, 566, 881, 1020
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BstZI	CGGCCG	1 cut(s)	437
Bsu15I	ATCGAT	1 cut(s)	947
BsuRI	GGCC	7 cut(s)	288, 312, 375, 386, 439, 768, 828
BsuTUI	ATCGAT	1 cut(s)	947
BtsCI	GGATG	5 cut(s)	342, 403, 432, 713, 903
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	3 cut(s)	278, 313, 462
Cac8I	GCNNGC	4 cut(s)	286, 447, 793, 923
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	4 cut(s)	374, 384, 506, 748
ClaI	ATCGAT	1 cut(s)	947
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	3 cut(s)	577, 658, 770
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	6 cut(s)	242, 345, 565, 753, 885, 974
DpnI	GATC	6 cut(s)	163, 227, 613, 904, 946, 950
DpnII	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
EaeI	YGGCCR	1 cut(s)	437
EagI	CGGCCG	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EclXI	CGGCCG	1 cut(s)	437
Eco130I	CCWWGG	3 cut(s)	127, 697, 829
Eco47I	GGWCC	2 cut(s)	506, 748
Eco52I	CGGCCG	1 cut(s)	437
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	3 cut(s)	127, 697, 829
ErhI	CCWWGG	3 cut(s)	127, 697, 829
FaeI	CATG	3 cut(s)	580, 661, 773
FaiI	YATR	9 cut(s)	8, 110, 170, 322, 578, 659, 771, 980, 1016
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FaqI	GGGAC	3 cut(s)	97, 519, 734
FatI	CATG	3 cut(s)	576, 657, 769
FauI	CCCGC	1 cut(s)	279
FokI	GGATG	5 cut(s)	349, 390, 439, 700, 910
FspBI	CTAG	1 cut(s)	398
GsaI	CCCAGC	2 cut(s)	320, 336
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	7 cut(s)	288, 312, 375, 386, 439, 768, 828
HapII	CCGG	2 cut(s)	229, 717
Hin1II	CATG	3 cut(s)	580, 661, 773
HinfI	GANTC	5 cut(s)	77, 302, 518, 563, 757
HpaII	CCGG	2 cut(s)	229, 717
HphI	GGTGA	5 cut(s)	50, 56, 130, 170, 815
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	5 cut(s)	82, 346, 426, 543, 907
Hpy188III	TCNNGA	3 cut(s)	157, 229, 895
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	6 cut(s)	151, 627, 639, 662, 684, 818
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	8 cut(s)	250, 452, 560, 580, 713, 862, 1014, 1023
HpyF10VI	GCNNNNNNNGC	7 cut(s)	199, 202, 247, 461, 566, 881, 1020
HpyF3I	CTNAG	6 cut(s)	242, 345, 565, 753, 885, 974
Hsp92II	CATG	3 cut(s)	580, 661, 773
KflI	GGGWCCC	1 cut(s)	748
Kpn2I	TCCGGA	1 cut(s)	228
Kzo9I	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
LweI	GCATC	3 cut(s)	141, 412, 722
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	10, 62
MalI	GATC	6 cut(s)	163, 227, 613, 904, 946, 950
MboI	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
MboII	GAAGA	5 cut(s)	44, 127, 311, 495, 636
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	557, 766
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	3 cut(s)	332, 569, 791
MspI	CCGG	2 cut(s)	229, 717
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	199, 202, 247, 461, 566, 881, 1020
NdeII	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
NlaIII	CATG	3 cut(s)	580, 661, 773
NlaIV	GGNNCC	5 cut(s)	385, 507, 749, 750, 993
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	77, 302, 518
PflMI	CCANNNNNTGG	2 cut(s)	284, 371
PleI	GAGTC	2 cut(s)	557, 765
PpsI	GAGTC	2 cut(s)	557, 765
PpuMI	RGGWCCY	1 cut(s)	748
PscI	ACATGT	1 cut(s)	657
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	2 cut(s)	316, 332
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	5 cut(s)	385, 507, 749, 750, 993
PspPI	GGNCC	4 cut(s)	374, 384, 506, 748
PspPPI	RGGWCCY	1 cut(s)	748
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	555
Sau3AI	GATC	6 cut(s)	161, 225, 611, 902, 944, 948
Sau96I	GGNCC	4 cut(s)	374, 384, 506, 748
SchI	GAGTC	2 cut(s)	557, 766
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	4 cut(s)	143, 243, 436, 585
SfaNI	GCATC	3 cut(s)	141, 412, 722
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	2 cut(s)	506, 748
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	3 cut(s)	127, 697, 829
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	156, 258, 851, 947
TauI	GCSGC	7 cut(s)	277, 389, 442, 470, 572, 798, 1034
TfiI	GAWTC	3 cut(s)	77, 302, 518
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	3 cut(s)	285, 313, 462
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	44, 608, 786, 828
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	285, 313, 462
Van91I	CCANNNNNTGG	2 cut(s)	284, 371
VpaK11BI	GGWCC	2 cut(s)	506, 748
VspI	ATTAAT	1 cut(s)	555
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	2 cut(s)	890, 984
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.