Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

9533971 .. 9534537

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTCTCTCTGTGGTTCATGTTCTACTTCTTGCCCTCCTCTTAGCTAAAGCCACCTCTACCTCCCACCACCACCACCACCACCACCATCATCATCACCACGAAAAACTCAAGTCCCTCCACTTTGCACTCTTTCAACATGAGACCATTAACAAAACCGGATACATTGTAGTTAATGGCGTAGCCGGAACAGTTGTTAGTCAAACCACAACGCCTTTCGGCACCCTGTTTGCTTTCCAGGATCCGATGACTGTCACAGCCAATCGATCTTCAAAGGTAGCTGGGATAGCTCAAGGAACTTCCATCACTTCCAGCTTGGATGGGCTTGAGAGCATTTCAATTGCTAAGATAACCTTGCGGTTGAAGCACTACAGTGGTTCGATTTCCATTGTTGGAGGCACACATAATATCAAGCCTGCTGATCATCCTGTTGTCGGAGGCACCGGTGATTTCAAGCTTGTGCAGGGCTATGTGACATCATCTCCGGTCAATCTCATGGGCTTAACTGTTACCTACAAGATTGCATTCCACCTTTACTGGCCTCCATATGCAACTCAAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

188

Amino Acids

20.26

Weight (kDa)

9.52

Isoelectric Point (pI)

20.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	41 - 166	6.1e-26	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 440
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	2 cut(s)	236, 249
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	137, 273, 339, 364, 454
AjnI	CCWGG	1 cut(s)	237
AleI	CACNNNNGTG	1 cut(s)	372
AluBI	AGCT	6 cut(s)	47, 281, 290, 315, 457, 560
AluI	AGCT	6 cut(s)	47, 281, 290, 315, 457, 560
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	236, 249
AoxI	GGCC	1 cut(s)	539
AsiGI	ACCGGT	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	89, 458
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	2 cut(s)	221, 440
BccI	CCATC	3 cut(s)	96, 311, 314
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	3 cut(s)	223, 243, 442
BmrFI	CCNGG	1 cut(s)	239
BpuEI	CTTGAG	4 cut(s)	95, 276, 347, 540
Bsa29I	ATCGAT	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	137
BsaWI	WCCGGW	3 cut(s)	158, 443, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	265
BseGI	GGATG	2 cut(s)	325, 424
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	2 cut(s)	221, 440
BshTI	ACCGGT	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	265
BsiSI	CCGG	4 cut(s)	159, 186, 444, 485
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	241, 266, 421
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	541
BspDI	ATCGAT	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	223, 243, 442
BspPI	GGATC	2 cut(s)	236, 249
BspT107I	GGYRCC	2 cut(s)	221, 440
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	542
BssAI	RCCGGY	1 cut(s)	443
BssMI	GATC	3 cut(s)	241, 266, 421
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	193, 253, 374, 508
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	43, 345
BstF5I	GGATG	2 cut(s)	325, 424
BstKTI	GATC	3 cut(s)	244, 269, 424
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	241, 266, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 364, 557
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	541
BsuTUI	ATCGAT	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	325, 424
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	443
CviAII	CATG	3 cut(s)	20, 140, 496
DdeI	CTNAG	2 cut(s)	43, 345
DpnI	GATC	3 cut(s)	243, 268, 423
DpnII	GATC	3 cut(s)	241, 266, 421
Eco31I	GGTCTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	23, 143, 499
FaiI	YATR	7 cut(s)	21, 141, 405, 471, 497, 547, 549
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	19, 139, 495
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	421
FokI	GGATG	2 cut(s)	332, 411
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	4 cut(s)	159, 186, 444, 485
Hin1II	CATG	3 cut(s)	23, 143, 499
HindIII	AAGCTT	2 cut(s)	455, 558
HpaII	CCGG	4 cut(s)	159, 186, 444, 485
HphI	GGTGA	2 cut(s)	89, 458
Hpy188I	TCNGA	2 cut(s)	246, 437
HpyCH4III	ACNGT	4 cut(s)	193, 253, 374, 508
HpyCH4V	TGCA	4 cut(s)	128, 463, 524, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 364, 557
HpyF3I	CTNAG	2 cut(s)	43, 345
Hsp92II	CATG	3 cut(s)	23, 143, 499
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	241, 266, 421
MaeIII	GTNAC	3 cut(s)	253, 472, 508
MalI	GATC	3 cut(s)	243, 268, 423
MboI	GATC	3 cut(s)	241, 266, 421
MboII	GAAGA	1 cut(s)	261
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	339
MmeI	TCCRAC	2 cut(s)	373, 415
MnlI	CCTC	8 cut(s)	47, 50, 67, 73, 128, 389, 431, 552
MseI	TTAA	4 cut(s)	150, 174, 503, 565
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	4 cut(s)	159, 186, 444, 485
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	287, 364, 557
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	3 cut(s)	241, 266, 421
NlaIII	CATG	3 cut(s)	23, 143, 499
NlaIV	GGNNCC	3 cut(s)	223, 243, 442
NmuCI	GTSAC	2 cut(s)	253, 472
OliI	CACNNNNGTG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	223, 243, 442
PsuI	RGATCY	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	150, 174, 503, 565
Sau3AI	GATC	3 cut(s)	241, 266, 421
ScrFI	CCNGG	1 cut(s)	239
SfcI	CTRYAG	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	4 cut(s)	110, 291, 326, 555
SmoI	CTYRAG	4 cut(s)	110, 291, 326, 555
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	193, 253, 374, 508
TaqI	TCGA	2 cut(s)	265, 380
TasI	AATT	1 cut(s)	339
Tru1I	TTAA	4 cut(s)	150, 174, 503, 565
Tru9I	TTAA	4 cut(s)	150, 174, 503, 565
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	253, 472
Tsp45I	GTSAC	2 cut(s)	253, 472
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.