Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

13020474 .. 13027248

Gene Structure 6775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGGAATAGCAACAGTACAACCACTCTCACCAATATTCTTCTCATCAAACTCATCAAAGGGTACTCACAATAATTCAATCTCGGAAAAGTACTCCAATTCAAGTAACTCTATGTCCCAAGACTACCATCAAAGCATCTACAGCTTCCCCAATGGCTTCGAAAGATCGGCGATGACCACCCACCAAGAGCAGCAGCAGCAACAGCAGCAGCAACACCACTTAGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGGTTCGAGCCACCTCCTCCGCCATTGGTCGGGTTAGACGAGGAAGAATCCAATCCGGTGTATGAAACAGCTGGGATGTTGTCGGAGATGTTTAATTATCCTGCAGGAGTCGCACCACCTGCAGAACTGCTTGAACATCCGATGGCTGCCGGCTATCGGATGGCTCGGCCGCAGCAGCATCAATCTGCTGCGGCCGAGTGGTATGGAAGCAGACAAAACATGGTGGGCGGATTGGGTCCATTGGGGGATTCAAATAAGAATCAGAGTGGCCGCGACAACTTAGCAGTTCATCAGCATCAGATTTCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCTTCTCCTCCAGCTCACTCAACTTCTTCTACTCTTCACATGTTGCTCCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGCGGAGGAGGAGGGGCTTTTGGTCAGTTCTCATGGGTGAGTCCAGATACTCATGGCCATGAAGGCGGTTCCACAACTGGTCCTGCCCACCAACTCAACACCCGCAACATTAACCCTAGTGATCACCACCAGCAAGGTCTTTCATTATCTTTATCCACTTCATTGCAACACTTAGAGGCAGCCAAAGCCGAAGAACTACGAATGGGAGATGGTTCCGGATTGTTGTACTACAACAATCCGGAAGGGTCTTCCAGCAGTGCACATTACAGCCAGTACAAGAATCTTGTTGGTCATCAAAGCCAGCAGGTTCACGTCGGGTTCGGGTCGTCATCTTTCGGGGTTGTGAATGTCTTGAGGAATTCAAAGTATGTCAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTGGGTCGACAGAATAGCTCATTAAACCCTAGCTCCAATCCAGCTGGCACCAGCGGCGGTGGTGCTGGCGGTGGCGCCTCTTCATCTTCATCAAAGGATGCGCCTCCTACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATCGAAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAACGCATTTGATCTGGTGATGGGTTTCGGGGCCGCGGTGCCGTACACAGCCCTAGCTCAGAAGGCAATGTCACGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTCGGAGAGAAAGATGGTGCGGGGAACTCAGGTATAACCAAAGGAGAGACGCCGAGGCTAAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGATCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGTCTCTCCAGAAACCAGGTCTCAAACTGGTTCATCAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGGTGGTGGTGCAGCTGCAGCAGCAGCAGTATCAGTAGATCAAGATCAGAGATCAGAACAACGCAACAACCAAAACAACAACATTAGTGACCACCACGCACAGACTCCAACGCCTCCCACAACAACAACAACGACAACTGCCATGTCAGCCACAACGACAACAACAGTAGCTACAAGATCCGATATCAATGCCTCCGAAAGTGACCCTTCACTCCTCGCATTCAATAGGCAACGATCCTTCTCGGAAAACCAATCCACTACTCCTACTTACCCCATCAACATGTCCACCAGTACCACCGCCACCCCTCTGGTGGCGCCGCCTGTGCCCTACCCCACCACCGCCGACGACACGTGTCGCCGCGGCAGCATGGACTACGGGACCACCTCGGGCAACGCATCATCATCAGCAGTTGCAGGAGATCATCAAAGTCTTCATCATCATGCAGGGTCTACGCTTATAACGTTCGGGACCACCACGGCGGGTGATGTGTCTCTCACTCTCGGGCTCCGCCATGCCGGAGGAGCAAACATTCCCGAGAAGAACACTTCTTCCTTCTCCATTAGAGACTTTGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

812

Amino Acids

87.82

Weight (kDa)

6.74

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	354 - 493	7.4e-47	Associated with HOX
Homeobox_KN	PF05920	563 - 602	5.9e-19	Homeobox KN domain
Homeodomain	PF00046	570 - 602	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2315
AarI	CACCTGC	1 cut(s)	385
AasI	GACNNNNNNGTC	1 cut(s)	1755
Acc36I	ACCTGC	2 cut(s)	385, 1006
AccB1I	GGYRCC	5 cut(s)	1196, 1223, 1411, 1458, 2170
AccI	GTMKAC	2 cut(s)	1156, 2306
AccII	CGCG	4 cut(s)	531, 1409, 1472, 2217
AccIII	TCCGGA	3 cut(s)	234, 926, 949
AclI	AACGTT	1 cut(s)	2318
AclWI	GGATC	5 cut(s)	226, 1286, 1338, 2028, 2085
AcoI	YGGCCR	4 cut(s)	425, 450, 526, 766
AcsI	RAATTY	1 cut(s)	1069
AcvI	CACGTG	1 cut(s)	2208
AcyI	GRCGYC	3 cut(s)	1224, 1556, 2171
AfaI	GTAC	9 cut(s)	18, 64, 92, 938, 986, 1418, 1715, 1835, 2149
AfiI	CCNNNNNNNGG	6 cut(s)	287, 414, 707, 1275, 1649, 2167
AflIII	ACRYGT	4 cut(s)	666, 2136, 2205, 2207
AgsI	TTSAA	8 cut(s)	78, 102, 392, 510, 1074, 1138, 1489, 2080
AjiI	CACGTC	1 cut(s)	1024
AjnI	CCWGG	3 cut(s)	700, 1685, 1770
AjuI	GAANNNNNNNTTGG	6 cut(s)	613, 645, 1133, 1165, 1638, 1670
AleI	CACNNNNGTG	1 cut(s)	1497
AloI	GAACNNNNNNTCC	2 cut(s)	2390, 2422
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	7 cut(s)	1547, 1582, 1633, 1763, 1780, 2352, 2415
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	5 cut(s)	226, 1286, 1338, 2028, 2085
AlwNI	CAGNNNCTG	2 cut(s)	587, 1271
Ama87I	CYCGRG	3 cut(s)	2242, 2357, 2390
Aor13HI	TCCGGA	3 cut(s)	234, 926, 949
AoxI	GGCC	7 cut(s)	425, 450, 526, 766, 1086, 1404, 1651
ApaLI	GTGCAC	1 cut(s)	969
ApoI	RAATTY	1 cut(s)	1069
ArsI	GACNNNNNNTTYG	2 cut(s)	1653, 1685
AseI	ATTAAT	1 cut(s)	570
AspLEI	GCGC	4 cut(s)	1226, 1252, 1483, 2173
AspS9I	GGNCC	5 cut(s)	494, 791, 1404, 2235, 2325
AsuHPI	GGTGA	5 cut(s)	21, 760, 827, 1402, 2351
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	3 cut(s)	2242, 2357, 2390
AvaII	GGWCC	4 cut(s)	494, 791, 2235, 2325
BaeGI	GKGCMC	2 cut(s)	973, 2184
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	5 cut(s)	1196, 1223, 1411, 1458, 2170
BanII	GRGCYC	1 cut(s)	2364
BbrPI	CACGTG	1 cut(s)	2208
BbsI	GAAGAC	2 cut(s)	951, 2279
Bbv12I	GWGCWC	1 cut(s)	973
BbvCI	CCTCAGC	1 cut(s)	248
BccI	CCATC	9 cut(s)	135, 394, 412, 914, 1387, 1514, 1606, 1615, 2138
BceAI	ACGGC	3 cut(s)	1399, 1463, 2349
BcgI	CGANNNNNNTGC	2 cut(s)	2027, 2061
BciT130I	CCWGG	3 cut(s)	702, 1687, 1772
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	7 cut(s)	1547, 1582, 1633, 1763, 1780, 2352, 2415
BfaI	CTAG	5 cut(s)	828, 1179, 1427, 1574, 1797
BfmI	CTRYAG	4 cut(s)	139, 360, 378, 1872
BfoI	RGCGCY	2 cut(s)	1227, 2174
BfuAI	ACCTGC	2 cut(s)	385, 1006
BglI	GCCNNNNNGGC	1 cut(s)	774
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	702, 1687, 1772
Bme18I	GGWCC	4 cut(s)	494, 791, 2235, 2325
BmeT110I	CYCGRG	3 cut(s)	2242, 2357, 2390
BmgBI	CACGTC	1 cut(s)	1024
BmgT120I	GGNCC	5 cut(s)	494, 791, 1404, 2235, 2325
BmrFI	CCNGG	3 cut(s)	702, 1687, 1772
BmsI	GCATC	8 cut(s)	144, 445, 562, 1237, 1560, 1714, 1744, 2261
BoxI	GACNNNNGTC	1 cut(s)	2208
BpiI	GAAGAC	2 cut(s)	951, 2279
BpmI	CTGGAG	2 cut(s)	621, 1747
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	1084, 1699
BsaAI	YACGTR	1 cut(s)	2208
BsaBI	GATNNNNATC	2 cut(s)	1734, 1899
BsaHI	GRCGYC	3 cut(s)	1224, 1556, 2171
BsaI	GGTCTC	3 cut(s)	1633, 1763, 1780
BsaJI	CCNNGG	7 cut(s)	701, 1407, 1559, 1818, 2215, 2241, 2331
BsaWI	WCCGGW	5 cut(s)	234, 313, 926, 949, 1455
BsaXI	ACNNNNNCTCC	2 cut(s)	1166, 1196
Bsc4I	CCNNNNNNNGG	6 cut(s)	287, 414, 707, 1275, 1649, 2167
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	5 cut(s)	793, 982, 1759, 1787, 2145
Bse3DI	GCAATG	2 cut(s)	872, 1446
Bse8I	GATNNNNATC	2 cut(s)	1734, 1899
BseAI	TCCGGA	3 cut(s)	234, 926, 949
BseBI	CCWGG	3 cut(s)	702, 1687, 1772
BseDI	CCNNGG	7 cut(s)	701, 1407, 1559, 1818, 2215, 2241, 2331
BseGI	GGATG	5 cut(s)	339, 394, 423, 686, 1252
BseJI	GATNNNNATC	2 cut(s)	1734, 1899
BseLI	CCNNNNNNNGG	6 cut(s)	287, 414, 707, 1275, 1649, 2167
BseMI	GCAATG	2 cut(s)	872, 1446
BseMII	CTCAG	4 cut(s)	239, 1445, 1548, 1577
BseNI	ACTGG	5 cut(s)	793, 982, 1759, 1787, 2145
BseRI	GAGGAG	6 cut(s)	264, 624, 732, 735, 2060, 2391
BseSI	GKGCMC	2 cut(s)	973, 2184
BseX3I	CGGCCG	2 cut(s)	425, 450
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	1887
Bsh1236I	CGCG	4 cut(s)	531, 1409, 1472, 2217
Bsh1285I	CGRYCG	2 cut(s)	428, 453
BshFI	GGCC	7 cut(s)	427, 452, 528, 768, 1088, 1406, 1653
BshNI	GGYRCC	5 cut(s)	1196, 1223, 1411, 1458, 2170
BsiEI	CGRYCG	2 cut(s)	428, 453
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	3 cut(s)	2242, 2357, 2390
BsiSI	CCGG	7 cut(s)	235, 314, 408, 927, 950, 1456, 2373
BslFI	GGGAC	3 cut(s)	100, 2248, 2338
BslI	CCNNNNNNNGG	6 cut(s)	287, 414, 707, 1275, 1649, 2167
BsmAI	GTCTC	7 cut(s)	1547, 1582, 1633, 1763, 1780, 2352, 2415
BsmBI	CGTCTC	1 cut(s)	1547
BsmFI	GGGAC	3 cut(s)	100, 2248, 2338
BsmI	GAATGC	1 cut(s)	2075
BsnI	GGCC	7 cut(s)	427, 452, 528, 768, 1088, 1406, 1653
Bso31I	GGTCTC	3 cut(s)	1633, 1763, 1780
BsoBI	CYCGRG	3 cut(s)	2242, 2357, 2390
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	973, 2184, 2364
Bsp13I	TCCGGA	3 cut(s)	234, 926, 949
Bsp19I	CCATGG	1 cut(s)	1818
BspANI	GGCC	7 cut(s)	427, 452, 528, 768, 1088, 1406, 1653
BspCNI	CTCAG	4 cut(s)	240, 1444, 1547, 1578
BspEI	TCCGGA	3 cut(s)	234, 926, 949
BspFNI	CGCG	4 cut(s)	531, 1409, 1472, 2217
BspMAI	CTGCAG	3 cut(s)	364, 382, 1876
BspMI	ACCTGC	2 cut(s)	385, 1006
BspPI	GGATC	5 cut(s)	226, 1286, 1338, 2028, 2085
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	5 cut(s)	1196, 1223, 1411, 1458, 2170
BspTNI	GGTCTC	3 cut(s)	1633, 1763, 1780
BsrDI	GCAATG	2 cut(s)	872, 1446
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	5 cut(s)	793, 982, 1759, 1787, 2145
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	7 cut(s)	701, 1407, 1559, 1818, 2215, 2241, 2331
BssNI	GRCGYC	3 cut(s)	1224, 1556, 2171
BssT1I	CCWWGG	1 cut(s)	1818
Bst2UI	CCWGG	3 cut(s)	702, 1687, 1772
Bst4CI	ACNGT	3 cut(s)	16, 1308, 2023
Bst6I	CTCTTC	4 cut(s)	666, 1101, 1234, 1821
BstACI	GRCGYC	3 cut(s)	1224, 1556, 2171
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	2208
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	5 cut(s)	409, 1013, 1195, 1216, 1355
BstDEI	CTNAG	7 cut(s)	220, 248, 538, 883, 1431, 1534, 1586
BstDSI	CCRYGG	4 cut(s)	1407, 1818, 2215, 2331
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstF5I	GGATG	5 cut(s)	339, 394, 423, 686, 1252
BstFNI	CGCG	4 cut(s)	531, 1409, 1472, 2217
BstH2I	RGCGCY	2 cut(s)	1227, 2174
BstHHI	GCGC	4 cut(s)	1226, 1252, 1483, 2173
BstMAI	GTCTC	7 cut(s)	1547, 1582, 1633, 1763, 1780, 2352, 2415
BstMCI	CGRYCG	2 cut(s)	428, 453
BstNI	CCWGG	3 cut(s)	702, 1687, 1772
BstNSI	RCATGY	2 cut(s)	670, 2140
BstPAI	GACNNNNGTC	1 cut(s)	2208
BstSCI	CCNGG	3 cut(s)	700, 1685, 1770
BstSFI	CTRYAG	4 cut(s)	139, 360, 378, 1872
BstSLI	GKGCMC	2 cut(s)	973, 2184
BstUI	CGCG	4 cut(s)	531, 1409, 1472, 2217
BstV2I	GAAGAC	2 cut(s)	951, 2279
BstX2I	RGATCY	2 cut(s)	231, 2033
BstXI	CCANNNNNNTGG	1 cut(s)	2164
BstYI	RGATCY	2 cut(s)	231, 2033
BstZI	CGGCCG	2 cut(s)	425, 450
BsuRI	GGCC	7 cut(s)	427, 452, 528, 768, 1088, 1406, 1653
BtgI	CCRYGG	4 cut(s)	1407, 1818, 2215, 2331
BtgZI	GCGATG	2 cut(s)	185, 1737
BtrI	CACGTC	1 cut(s)	1024
BtsCI	GGATG	5 cut(s)	339, 394, 423, 686, 1252
BtsI	GCAGTG	2 cut(s)	973, 1123
BtsIMutI	CAGTG	2 cut(s)	973, 1123
BveI	ACCTGC	2 cut(s)	385, 1006
Cac8I	GCNNGC	5 cut(s)	409, 1013, 1195, 1216, 1355
CaiI	CAGNNNCTG	2 cut(s)	587, 1271
CfoI	GCGC	4 cut(s)	1226, 1252, 1483, 2173
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	5 cut(s)	494, 791, 1404, 2235, 2325
Cfr42I	CCGCGG	2 cut(s)	1410, 2218
CseI	GACGC	2 cut(s)	1478, 1564
CsiI	ACCWGGT	1 cut(s)	1770
Csp6I	GTAC	9 cut(s)	17, 63, 91, 937, 985, 1417, 1714, 1834, 2148
CviQI	GTAC	9 cut(s)	17, 63, 91, 937, 985, 1417, 1714, 1834, 2148
DdeI	CTNAG	7 cut(s)	220, 248, 538, 883, 1431, 1534, 1586
DinI	GGCGCC	2 cut(s)	1225, 2172
DrdI	GACNNNNNNGTC	1 cut(s)	1755
DseDI	GACNNNNNNGTC	1 cut(s)	1755
EaeI	YGGCCR	4 cut(s)	425, 450, 526, 766
EagI	CGGCCG	2 cut(s)	425, 450
Eam1104I	CTCTTC	4 cut(s)	666, 1101, 1234, 1821
EarI	CTCTTC	4 cut(s)	666, 1101, 1234, 1821
EciI	GGCGGA	4 cut(s)	267, 501, 729, 2354
EclXI	CGGCCG	2 cut(s)	425, 450
Eco130I	CCWWGG	1 cut(s)	1818
Eco147I	AGGCCT	1 cut(s)	1653
Eco24I	GRGCYC	1 cut(s)	2364
Eco31I	GGTCTC	3 cut(s)	1633, 1763, 1780
Eco32I	GATATC	1 cut(s)	2041
Eco47I	GGWCC	4 cut(s)	494, 791, 2235, 2325
Eco52I	CGGCCG	2 cut(s)	425, 450
Eco72I	CACGTG	1 cut(s)	2208
Eco88I	CYCGRG	3 cut(s)	2242, 2357, 2390
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoRI	GAATTC	1 cut(s)	1069
EcoRII	CCWGG	3 cut(s)	700, 1685, 1770
EcoRV	GATATC	1 cut(s)	2041
EcoT14I	CCWWGG	1 cut(s)	1818
EcoT38I	GRGCYC	1 cut(s)	2364
EgeI	GGCGCC	2 cut(s)	1225, 2172
EheI	GGCGCC	2 cut(s)	1225, 2172
ErhI	CCWWGG	1 cut(s)	1818
Esp3I	CGTCTC	1 cut(s)	1547
FalI	AAGNNNNNCTT	4 cut(s)	613, 645, 2047, 2079
FaqI	GGGAC	3 cut(s)	100, 2248, 2338
FauI	CCCGC	3 cut(s)	821, 1519, 2329
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	2 cut(s)	1156, 2306
FokI	GGATG	5 cut(s)	346, 381, 430, 673, 1259
FriOI	GRGCYC	1 cut(s)	2364
FspBI	CTAG	5 cut(s)	828, 1179, 1427, 1574, 1797
GlaI	GCGC	4 cut(s)	1225, 1251, 1482, 2172
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	2 cut(s)	621, 1747
HaeII	RGCGCY	2 cut(s)	1227, 2174
HaeIII	GGCC	7 cut(s)	427, 452, 528, 768, 1088, 1406, 1653
HapII	CCGG	7 cut(s)	235, 314, 408, 927, 950, 1456, 2373
HgaI	GACGC	2 cut(s)	1478, 1564
HhaI	GCGC	4 cut(s)	1226, 1252, 1483, 2173
Hin1I	GRCGYC	3 cut(s)	1224, 1556, 2171
Hin6I	GCGC	4 cut(s)	1224, 1250, 1481, 2171
HinP1I	GCGC	4 cut(s)	1224, 1250, 1481, 2171
HincII	GTYRAC	3 cut(s)	1157, 1375, 1672
HindII	GTYRAC	3 cut(s)	1157, 1375, 1672
HindIII	AAGCTT	1 cut(s)	1632
HinfI	GANTC	9 cut(s)	305, 366, 506, 517, 578, 610, 751, 991, 1960
HpaI	GTTAAC	1 cut(s)	1375
HpaII	CCGG	7 cut(s)	235, 314, 408, 927, 950, 1456, 2373
HphI	GGTGA	5 cut(s)	21, 760, 827, 1402, 2351
Hpy166II	GTNNAC	8 cut(s)	971, 1021, 1157, 1375, 1419, 1672, 2142, 2307
Hpy8I	GTNNAC	8 cut(s)	971, 1021, 1157, 1375, 1419, 1672, 2142, 2307
Hpy99I	CGWCG	2 cut(s)	1028, 2204
HpyCH4III	ACNGT	3 cut(s)	16, 1308, 2023
HpyCH4IV	ACGT	3 cut(s)	1023, 2207, 2318
HpyF3I	CTNAG	7 cut(s)	220, 248, 538, 883, 1431, 1534, 1586
HpySE526I	ACGT	3 cut(s)	1023, 2207, 2318
Hsp92I	GRCGYC	3 cut(s)	1224, 1556, 2171
HspAI	GCGC	4 cut(s)	1224, 1250, 1481, 2171
KasI	GGCGCC	2 cut(s)	1223, 2170
Kpn2I	TCCGGA	3 cut(s)	234, 926, 949
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	1375
KspI	CCGCGG	2 cut(s)	1410, 2218
LmnI	GCTCC	4 cut(s)	678, 1187, 2367, 2378
LweI	GCATC	8 cut(s)	144, 445, 562, 1237, 1560, 1714, 1744, 2261
MabI	ACCWGGT	1 cut(s)	1770
MaeI	CTAG	5 cut(s)	828, 1179, 1427, 1574, 1797
MaeII	ACGT	3 cut(s)	1023, 2207, 2318
MaeIII	GTNAC	5 cut(s)	104, 1443, 1474, 1943, 2057
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	2 cut(s)	231, 2033
MhlI	GDGCHC	3 cut(s)	973, 2184, 2364
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	8 cut(s)	73, 97, 352, 1069, 1097, 1133, 1148, 1502
MluNI	TGGCCA	1 cut(s)	768
Mly113I	GGCGCC	2 cut(s)	1224, 2171
MlyI	GAGTC	3 cut(s)	375, 760, 1954
MmeI	TCCRAC	3 cut(s)	321, 1083, 1988
Mox20I	TGGCCA	1 cut(s)	768
MroI	TCCGGA	3 cut(s)	234, 926, 949
MroNI	GCCGGC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	6 cut(s)	351, 570, 822, 1172, 1374, 2437
MslI	CAYNNNNRTG	4 cut(s)	768, 1497, 2135, 2295
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	9 cut(s)	329, 584, 1193, 1203, 1271, 1409, 1497, 1871, 2217
MspI	CCGG	7 cut(s)	235, 314, 408, 927, 950, 1456, 2373
MspR9I	CCNGG	3 cut(s)	702, 1687, 1772
MunI	CAATTG	1 cut(s)	1133
Mva1269I	GAATGC	1 cut(s)	2075
MvaI	CCWGG	3 cut(s)	702, 1687, 1772
MvnI	CGCG	4 cut(s)	531, 1409, 1472, 2217
NaeI	GCCGGC	1 cut(s)	409
NarI	GGCGCC	2 cut(s)	1224, 2171
NcoI	CCATGG	1 cut(s)	1818
NgoMIV	GCCGGC	1 cut(s)	407
NmeAIII	GCCGAG	3 cut(s)	403, 478, 1584
NmuCI	GTSAC	3 cut(s)	1443, 1943, 2057
NspI	RCATGY	2 cut(s)	670, 2140
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	1497
PaqCI	CACCTGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	1653
PciI	ACATGT	2 cut(s)	666, 2136
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 2315
PctI	GAATGC	1 cut(s)	2075
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	6 cut(s)	305, 506, 517, 578, 610, 991
PleI	GAGTC	3 cut(s)	374, 759, 1954
PluTI	GGCGCC	2 cut(s)	1227, 2174
PmaCI	CACGTG	1 cut(s)	2208
PmlI	CACGTG	1 cut(s)	2208
PpsI	GAGTC	3 cut(s)	374, 759, 1954
Ppu21I	YACGTR	1 cut(s)	2208
PscI	ACATGT	2 cut(s)	666, 2136
PshAI	GACNNNNGTC	1 cut(s)	2208
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	2315
Psp1406I	AACGTT	1 cut(s)	2318
Psp6I	CCWGG	3 cut(s)	700, 1685, 1770
PspCI	CACGTG	1 cut(s)	2208
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	3 cut(s)	700, 1685, 1770
PspPI	GGNCC	5 cut(s)	494, 791, 1404, 2235, 2325
PstI	CTGCAG	3 cut(s)	364, 382, 1876
PstNI	CAGNNNCTG	2 cut(s)	587, 1271
PsuI	RGATCY	2 cut(s)	231, 2033
PvuII	CAGCTG	5 cut(s)	329, 584, 1193, 1497, 1871
RsaI	GTAC	9 cut(s)	18, 64, 92, 938, 986, 1418, 1715, 1835, 2149
RsaNI	GTAC	9 cut(s)	17, 63, 91, 937, 985, 1417, 1714, 1834, 2148
RseI	CAYNNNNRTG	4 cut(s)	768, 1497, 2135, 2295
SacII	CCGCGG	2 cut(s)	1410, 2218
SalI	GTCGAC	1 cut(s)	1155
SaqAI	TTAA	6 cut(s)	351, 570, 822, 1172, 1374, 2437
Sau96I	GGNCC	5 cut(s)	494, 791, 1404, 2235, 2325
SbfI	CCTGCAGG	1 cut(s)	364
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	3 cut(s)	375, 760, 1954
ScrFI	CCNGG	3 cut(s)	702, 1687, 1772
SdaI	CCTGCAGG	1 cut(s)	364
SduI	GDGCHC	3 cut(s)	973, 2184, 2364
SexAI	ACCWGGT	1 cut(s)	1770
SfaNI	GCATC	8 cut(s)	144, 445, 562, 1237, 1560, 1714, 1744, 2261
SfcI	CTRYAG	4 cut(s)	139, 360, 378, 1872
SfoI	GGCGCC	2 cut(s)	1225, 2172
Sfr303I	CCGCGG	2 cut(s)	1410, 2218
SfuI	TTCGAA	1 cut(s)	159
SgrBI	CCGCGG	2 cut(s)	1410, 2218
SinI	GGWCC	4 cut(s)	494, 791, 2235, 2325
SmiMI	CAYNNNNRTG	4 cut(s)	768, 1497, 2135, 2295
SmlI	CTYRAG	2 cut(s)	1063, 1678
SmoI	CTYRAG	2 cut(s)	1063, 1678
Sse8387I	CCTGCAGG	1 cut(s)	364
Sse9I	AATT	8 cut(s)	73, 97, 352, 1069, 1097, 1133, 1148, 1502
SseBI	AGGCCT	1 cut(s)	1653
SspDI	GGCGCC	2 cut(s)	1223, 2170
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	5 cut(s)	828, 1179, 1427, 1574, 1797
StuI	AGGCCT	1 cut(s)	1653
StyD4I	CCNGG	3 cut(s)	700, 1685, 1770
StyI	CCWWGG	1 cut(s)	1818
TaaI	ACNGT	3 cut(s)	16, 1308, 2023
TaiI	ACGT	3 cut(s)	1026, 2210, 2321
TaqI	TCGA	7 cut(s)	159, 264, 563, 1156, 1281, 1333, 1804
TasI	AATT	8 cut(s)	73, 97, 352, 1069, 1097, 1133, 1148, 1502
TatI	WGTACW	4 cut(s)	16, 90, 936, 984
TfiI	GAWTC	6 cut(s)	305, 506, 517, 578, 610, 991
Tru1I	TTAA	6 cut(s)	351, 570, 822, 1172, 1374, 2437
Tru9I	TTAA	6 cut(s)	351, 570, 822, 1172, 1374, 2437
TscAI	CASTG	2 cut(s)	973, 1123
TseFI	GTSAC	3 cut(s)	1443, 1943, 2057
Tsp45I	GTSAC	3 cut(s)	1443, 1943, 2057
TspRI	CASTG	2 cut(s)	973, 1123
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	4 cut(s)	494, 791, 2235, 2325
VspI	ATTAAT	1 cut(s)	570
XagI	CCTNNNNNAGG	1 cut(s)	705
XapI	RAATTY	1 cut(s)	1069
XceI	RCATGY	2 cut(s)	670, 2140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2164
XmiI	GTMKAC	2 cut(s)	1156, 2306
XspI	CTAG	5 cut(s)	828, 1179, 1427, 1574, 1797
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.