Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

14068842 .. 14074348

Gene Structure 5507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGACCACCCACCAAGAGCAGCAGCAGCAACAGCAGCAGCAACACCACTTAGCACAGCAGATCCGGAGGGAAAAGCTGAGGGTGCAAGGGTTCGAGCCACCTCCTCCGCCATTGGTCGGGTTAGACGAGGAAGAATCCGGAGGCCTCAATCCGGTGTATGAAACAGCTGGGATGTTGTCGGAGATGTTTAATTATCCTGCAGGAGTCGCACCACCTGCAGAACTGCTTGAACATCCGATGACTGCAGGCTATCGGATGGCTCGGCCGCAGCAGCATCAATCTGCTGCGGCCGAGTGGTATGGAAGCAGACAAAACATGGTGGGCGGATTGGGTTCATTGGGGGATTCAAATAAGAATCAGAGTGGCCGCGACAACTTAGCAGCTCATCAGCATCAGATTTCGACCATTAATGCGGATTCAGCTGCTGCCATGCAGCTTTTTCTAATGAATCCACAACCAAGATCGCCTTCTCCTCCAGCTCACTCAACTTCTTCTACTCTTCACATGTTGCTCCCTAATCCTTCATCCACTACTTTTCCTGGGGCAGGAGGCGGAGGAGGAGGAGGAGGGGCTTTTGGTCAATTCTCATGGGTGAGTCCAGATACTCATGGCCATGAAGGCGGTTCCACAGCTGGTCCTGCCCACCAACTCAATACCAGCAACATTAACCCTAGTGATCACCACCAGCAAGGTCTTTCATTATCTTTATCCACTTCATTGCAACACTTAGAGGCAGCCAAAGCCGAAGAACTAAGAATGGGAGATGGTTCCGGATTGTTGTACTACAACAATCCGGAAGGGTCTTCCAGCAGTGCACATTACAACCAGTACAAGAATCTCGTTGGTCATCAAAGCCAGCAGGTTCACGTCGGGTTCGGGTCGTCATCTTTCGGGGTTGTGAATGTCTTGAGGAATTCAAAGTATGTCAAGGCCGCCCAAGAATTGTTGGAAGAGTTTTGCAGTGTTGGTAGGGGTCAATTGAAGAAGAACAAATTGAGTCGACAGAATAGCTCATTAAACCCTAGCTCCAATCCAGCTGGCAACAGCGGCGGTGGTGCTGGCGGTGGCGTCTCTTCATCTTCATCAAAGGATGCGCCTCCTACTTTGTCAGCCGCTGATAGGATCGAACATCAGAGAAGGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATCGAAGATACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAACGCATTTGATCTGGTGATGGGTTTCGGGGCCGCGGTGCCGTACACAGCCCTAGCTCAGAAGGCAATGTCACGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTCGGAGAGAAAGATGGTGCGGGGAACTCAGGTATAACCAAAGGAGAGACGCCGAGGCTAAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGATCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCAAGCGATGCAGATAAGCATCTGCTGGCACGACAGACTGGTCTCTCCAGAAACCAGGTCTCAAACTGGTTCATCAATGCTAGGGTTCGATTGTGGAAACCCATGGTGGAAGAGATGTACCAGCAAGAAGCCAATGAAGAAGGTGGTGGTGCAGCTGCAGCAGCAGCTGCAGTATCAGTAGATCAAGATCAGAGATCAGAACAACGCAACAACCAAAACAACAACACTAGTGACCACCACGCACAGACTCCAACGCCTCCCACAACAACAACGACAACTGCCATGTCAGCCACAACGACAACAACAGCAGCTACAAGATCCGATATCAATGCCTCCGAAAGTGACCCTTCACTCCTCGCATTCAATAGGCAACGATCCTTCTCGGAAAACCAATCCACTACTCCTACTTACCCCATCAACATTTCCACCAGCACCACCGCCACCGCTCTGGTGGCGCCGCCTGTGCCCTACACCACCACCGCCGACGACACGTGTCGCCGCGGCAGCATGGACTACGGGACCACCTCGGGCAATGCATCATCATCAGCAGTTGCAGGAGATCATCAAAGTCTTCATCATCATGCAGGGTCTACGCTTATAACGTTCGGGACCACCACGGCGGGCGATGTGTCTCTCACTCTAGGGCTCCGCCATGCCGGAGGAGCAAACATTCCCGAGAAGAACACTTCTTCCTTCTCCATTAGAGACTTTGGGGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

761

Amino Acids

81.8

Weight (kDa)

6.63

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	302 - 441	3.2e-47	Associated with HOX
Homeobox_KN	PF05920	511 - 550	5.5e-19	Homeobox KN domain
Homeodomain	PF00046	518 - 550	1.5e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2159
AarI	CACCTGC	1 cut(s)	223
AasI	GACNNNNNNGTC	1 cut(s)	1599
Acc36I	ACCTGC	2 cut(s)	223, 850
AccB1I	GGYRCC	3 cut(s)	1255, 1302, 2014
AccBSI	CCGCTC	1 cut(s)	2006
AccI	GTMKAC	2 cut(s)	1000, 2150
AccII	CGCG	4 cut(s)	369, 1253, 1316, 2061
AccIII	TCCGGA	4 cut(s)	63, 137, 770, 793
AclI	AACGTT	1 cut(s)	2162
AclWI	GGATC	5 cut(s)	55, 1130, 1182, 1872, 1929
AcoI	YGGCCR	4 cut(s)	263, 288, 364, 610
AcsI	RAATTY	1 cut(s)	913
AcvI	CACGTG	1 cut(s)	2052
AcyI	GRCGYC	3 cut(s)	1068, 1400, 2015
AfaI	GTAC	5 cut(s)	782, 830, 1262, 1559, 1679
AfiI	CCNNNNNNNGG	5 cut(s)	116, 151, 545, 1119, 1493
AflIII	ACRYGT	3 cut(s)	504, 2049, 2051
AgsI	TTSAA	6 cut(s)	230, 348, 918, 982, 1333, 1924
AhlI	ACTAGT	1 cut(s)	1787
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	3 cut(s)	538, 1529, 1614
AjuI	GAANNNNNNNTTGG	4 cut(s)	451, 483, 1482, 1514
AleI	CACNNNNGTG	1 cut(s)	1341
AloI	GAACNNNNNNTCC	2 cut(s)	2234, 2266
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	8 cut(s)	1075, 1391, 1426, 1477, 1607, 1624, 2196, 2259
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	5 cut(s)	55, 1130, 1182, 1872, 1929
AlwNI	CAGNNNCTG	3 cut(s)	425, 1115, 1727
Ama87I	CYCGRG	2 cut(s)	2086, 2234
Aor13HI	TCCGGA	4 cut(s)	63, 137, 770, 793
AoxI	GGCC	8 cut(s)	142, 263, 288, 364, 610, 930, 1248, 1495
ApaLI	GTGCAC	1 cut(s)	813
ApoI	RAATTY	1 cut(s)	913
ArsI	GACNNNNNNTTYG	2 cut(s)	1497, 1529
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	3 cut(s)	1096, 1327, 2017
AspS9I	GGNCC	4 cut(s)	635, 1248, 2079, 2169
AsuHPI	GGTGA	3 cut(s)	604, 671, 1246
AvaI	CYCGRG	2 cut(s)	2086, 2234
AvaII	GGWCC	3 cut(s)	635, 2079, 2169
BaeGI	GKGCMC	2 cut(s)	817, 2028
BalI	TGGCCA	1 cut(s)	612
BanI	GGYRCC	3 cut(s)	1255, 1302, 2014
BanII	GRGCYC	1 cut(s)	2208
BbrPI	CACGTG	1 cut(s)	2052
BbsI	GAAGAC	2 cut(s)	795, 2123
Bbv12I	GWGCWC	1 cut(s)	817
BbvCI	CCTCAGC	1 cut(s)	77
BccI	CCATC	7 cut(s)	250, 758, 1231, 1358, 1450, 1459, 1982
BceAI	ACGGC	3 cut(s)	1243, 1307, 2193
BcgI	CGANNNNNNTGC	2 cut(s)	1871, 1905
BciT130I	CCWGG	3 cut(s)	540, 1531, 1616
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	8 cut(s)	1075, 1391, 1426, 1477, 1607, 1624, 2196, 2259
BcuI	ACTAGT	1 cut(s)	1787
BfaI	CTAG	7 cut(s)	672, 1023, 1271, 1418, 1641, 1788, 2201
BfmI	CTRYAG	5 cut(s)	198, 216, 243, 1716, 1728
BfoI	RGCGCY	1 cut(s)	2018
BfuAI	ACCTGC	2 cut(s)	223, 850
BglI	GCCNNNNNGGC	1 cut(s)	618
Bme1390I	CCNGG	3 cut(s)	540, 1531, 1616
Bme18I	GGWCC	3 cut(s)	635, 2079, 2169
BmeT110I	CYCGRG	2 cut(s)	2086, 2234
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	4 cut(s)	635, 1248, 2079, 2169
BmiI	GGNNCC	9 cut(s)	625, 769, 1249, 1257, 1304, 2016, 2080, 2170, 2207
BmrFI	CCNGG	3 cut(s)	540, 1531, 1616
BmsI	GCATC	7 cut(s)	283, 400, 1081, 1404, 1558, 1588, 2105
BoxI	GACNNNNGTC	1 cut(s)	2052
BpiI	GAAGAC	2 cut(s)	795, 2123
BpmI	CTGGAG	2 cut(s)	459, 1591
Bpu10I	CCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	928, 1543
BsaAI	YACGTR	1 cut(s)	2052
BsaBI	GATNNNNATC	2 cut(s)	1578, 1746
BsaHI	GRCGYC	3 cut(s)	1068, 1400, 2015
BsaI	GGTCTC	3 cut(s)	1477, 1607, 1624
BsaJI	CCNNGG	7 cut(s)	539, 1251, 1403, 1662, 2059, 2085, 2175
BsaWI	WCCGGW	6 cut(s)	63, 137, 151, 770, 793, 1299
BsaXI	ACNNNNNCTCC	2 cut(s)	1010, 1040
Bsc4I	CCNNNNNNNGG	5 cut(s)	116, 151, 545, 1119, 1493
Bse1I	ACTGG	3 cut(s)	826, 1603, 1631
Bse3DI	GCAATG	3 cut(s)	716, 1290, 2098
Bse8I	GATNNNNATC	2 cut(s)	1578, 1746
BseAI	TCCGGA	4 cut(s)	63, 137, 770, 793
BseBI	CCWGG	3 cut(s)	540, 1531, 1616
BseDI	CCNNGG	7 cut(s)	539, 1251, 1403, 1662, 2059, 2085, 2175
BseGI	GGATG	5 cut(s)	177, 232, 261, 524, 1096
BseJI	GATNNNNATC	2 cut(s)	1578, 1746
BseLI	CCNNNNNNNGG	5 cut(s)	116, 151, 545, 1119, 1493
BseMI	GCAATG	3 cut(s)	716, 1290, 2098
BseMII	CTCAG	4 cut(s)	68, 1289, 1392, 1421
BseNI	ACTGG	3 cut(s)	826, 1603, 1631
BseRI	GAGGAG	8 cut(s)	93, 462, 570, 573, 576, 579, 1904, 2235
BseSI	GKGCMC	2 cut(s)	817, 2028
BseX3I	CGGCCG	2 cut(s)	263, 288
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	1731
Bsh1236I	CGCG	4 cut(s)	369, 1253, 1316, 2061
Bsh1285I	CGRYCG	2 cut(s)	266, 291
BshFI	GGCC	8 cut(s)	144, 265, 290, 366, 612, 932, 1250, 1497
BshNI	GGYRCC	3 cut(s)	1255, 1302, 2014
BsiEI	CGRYCG	2 cut(s)	266, 291
BsiHKAI	GWGCWC	1 cut(s)	817
BsiHKCI	CYCGRG	2 cut(s)	2086, 2234
BsiSI	CCGG	7 cut(s)	64, 138, 152, 771, 794, 1300, 2217
BslFI	GGGAC	2 cut(s)	2092, 2182
BslI	CCNNNNNNNGG	5 cut(s)	116, 151, 545, 1119, 1493
BsmAI	GTCTC	8 cut(s)	1075, 1391, 1426, 1477, 1607, 1624, 2196, 2259
BsmBI	CGTCTC	2 cut(s)	1075, 1391
BsmFI	GGGAC	2 cut(s)	2092, 2182
BsmI	GAATGC	1 cut(s)	1919
BsnI	GGCC	8 cut(s)	144, 265, 290, 366, 612, 932, 1250, 1497
Bso31I	GGTCTC	3 cut(s)	1477, 1607, 1624
BsoBI	CYCGRG	2 cut(s)	2086, 2234
Bsp1286I	GDGCHC	3 cut(s)	817, 2028, 2208
Bsp13I	TCCGGA	4 cut(s)	63, 137, 770, 793
Bsp19I	CCATGG	1 cut(s)	1662
BspANI	GGCC	8 cut(s)	144, 265, 290, 366, 612, 932, 1250, 1497
BspCNI	CTCAG	4 cut(s)	69, 1288, 1391, 1422
BspEI	TCCGGA	4 cut(s)	63, 137, 770, 793
BspFNI	CGCG	4 cut(s)	369, 1253, 1316, 2061
BspLI	GGNNCC	9 cut(s)	625, 769, 1249, 1257, 1304, 2016, 2080, 2170, 2207
BspMAI	CTGCAG	5 cut(s)	202, 220, 247, 1720, 1732
BspMI	ACCTGC	2 cut(s)	223, 850
BspPI	GGATC	5 cut(s)	55, 1130, 1182, 1872, 1929
BspT107I	GGYRCC	3 cut(s)	1255, 1302, 2014
BspTNI	GGTCTC	3 cut(s)	1477, 1607, 1624
BsrBI	CCGCTC	1 cut(s)	2006
BsrDI	GCAATG	3 cut(s)	716, 1290, 2098
BsrI	ACTGG	3 cut(s)	826, 1603, 1631
BssECI	CCNNGG	7 cut(s)	539, 1251, 1403, 1662, 2059, 2085, 2175
BssNI	GRCGYC	3 cut(s)	1068, 1400, 2015
BssT1I	CCWWGG	1 cut(s)	1662
Bst2UI	CCWGG	3 cut(s)	540, 1531, 1616
Bst4CI	ACNGT	1 cut(s)	1152
Bst6I	CTCTTC	4 cut(s)	504, 945, 1078, 1665
BstACI	GRCGYC	3 cut(s)	1068, 1400, 2015
BstAPI	GCANNNNNTGC	2 cut(s)	215, 1727
BstBAI	YACGTR	1 cut(s)	2052
BstC8I	GCNNGC	7 cut(s)	247, 857, 1039, 1060, 1199, 1587, 2182
BstDEI	CTNAG	8 cut(s)	49, 77, 376, 727, 752, 1275, 1378, 1430
BstDSI	CCRYGG	4 cut(s)	1251, 1662, 2059, 2175
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	5 cut(s)	177, 232, 261, 524, 1096
BstFNI	CGCG	4 cut(s)	369, 1253, 1316, 2061
BstH2I	RGCGCY	1 cut(s)	2018
BstHHI	GCGC	3 cut(s)	1096, 1327, 2017
BstMAI	GTCTC	8 cut(s)	1075, 1391, 1426, 1477, 1607, 1624, 2196, 2259
BstMCI	CGRYCG	2 cut(s)	266, 291
BstNI	CCWGG	3 cut(s)	540, 1531, 1616
BstNSI	RCATGY	1 cut(s)	508
BstPAI	GACNNNNGTC	1 cut(s)	2052
BstSCI	CCNGG	3 cut(s)	538, 1529, 1614
BstSFI	CTRYAG	5 cut(s)	198, 216, 243, 1716, 1728
BstSLI	GKGCMC	2 cut(s)	817, 2028
BstUI	CGCG	4 cut(s)	369, 1253, 1316, 2061
BstV2I	GAAGAC	2 cut(s)	795, 2123
BstX2I	RGATCY	2 cut(s)	60, 1877
BstXI	CCANNNNNNTGG	1 cut(s)	2008
BstYI	RGATCY	2 cut(s)	60, 1877
BstZI	CGGCCG	2 cut(s)	263, 288
BsuRI	GGCC	8 cut(s)	144, 265, 290, 366, 612, 932, 1250, 1497
BtgI	CCRYGG	4 cut(s)	1251, 1662, 2059, 2175
BtgZI	GCGATG	2 cut(s)	1581, 2199
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	5 cut(s)	177, 232, 261, 524, 1096
BtsI	GCAGTG	2 cut(s)	817, 967
BtsIMutI	CAGTG	2 cut(s)	817, 967
BveI	ACCTGC	2 cut(s)	223, 850
Cac8I	GCNNGC	7 cut(s)	247, 857, 1039, 1060, 1199, 1587, 2182
CaiI	CAGNNNCTG	3 cut(s)	425, 1115, 1727
CfoI	GCGC	3 cut(s)	1096, 1327, 2017
Cfr13I	GGNCC	4 cut(s)	635, 1248, 2079, 2169
Cfr42I	CCGCGG	2 cut(s)	1254, 2062
CseI	GACGC	3 cut(s)	1057, 1322, 1408
CsiI	ACCWGGT	1 cut(s)	1614
Csp6I	GTAC	5 cut(s)	781, 829, 1261, 1558, 1678
CviQI	GTAC	5 cut(s)	781, 829, 1261, 1558, 1678
DdeI	CTNAG	8 cut(s)	49, 77, 376, 727, 752, 1275, 1378, 1430
DinI	GGCGCC	1 cut(s)	2016
DrdI	GACNNNNNNGTC	1 cut(s)	1599
DseDI	GACNNNNNNGTC	1 cut(s)	1599
EaeI	YGGCCR	4 cut(s)	263, 288, 364, 610
EagI	CGGCCG	2 cut(s)	263, 288
Eam1104I	CTCTTC	4 cut(s)	504, 945, 1078, 1665
EarI	CTCTTC	4 cut(s)	504, 945, 1078, 1665
EciI	GGCGGA	4 cut(s)	96, 339, 567, 2198
EclXI	CGGCCG	2 cut(s)	263, 288
Eco130I	CCWWGG	1 cut(s)	1662
Eco147I	AGGCCT	2 cut(s)	144, 1497
Eco24I	GRGCYC	1 cut(s)	2208
Eco31I	GGTCTC	3 cut(s)	1477, 1607, 1624
Eco32I	GATATC	1 cut(s)	1885
Eco47I	GGWCC	3 cut(s)	635, 2079, 2169
Eco52I	CGGCCG	2 cut(s)	263, 288
Eco72I	CACGTG	1 cut(s)	2052
Eco88I	CYCGRG	2 cut(s)	2086, 2234
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	3 cut(s)	538, 1529, 1614
EcoRV	GATATC	1 cut(s)	1885
EcoT14I	CCWWGG	1 cut(s)	1662
EcoT22I	ATGCAT	1 cut(s)	2098
EcoT38I	GRGCYC	1 cut(s)	2208
EgeI	GGCGCC	1 cut(s)	2016
EheI	GGCGCC	1 cut(s)	2016
ErhI	CCWWGG	1 cut(s)	1662
Esp3I	CGTCTC	2 cut(s)	1075, 1391
FalI	AAGNNNNNCTT	4 cut(s)	451, 483, 1891, 1923
FaqI	GGGAC	2 cut(s)	2092, 2182
FauI	CCCGC	2 cut(s)	1363, 2173
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	1000, 2150
FokI	GGATG	5 cut(s)	184, 219, 268, 511, 1103
FriOI	GRGCYC	1 cut(s)	2208
FspBI	CTAG	7 cut(s)	672, 1023, 1271, 1418, 1641, 1788, 2201
GlaI	GCGC	3 cut(s)	1095, 1326, 2016
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	2 cut(s)	459, 1591
HaeII	RGCGCY	1 cut(s)	2018
HaeIII	GGCC	8 cut(s)	144, 265, 290, 366, 612, 932, 1250, 1497
HapII	CCGG	7 cut(s)	64, 138, 152, 771, 794, 1300, 2217
HgaI	GACGC	3 cut(s)	1057, 1322, 1408
HhaI	GCGC	3 cut(s)	1096, 1327, 2017
Hin1I	GRCGYC	3 cut(s)	1068, 1400, 2015
Hin6I	GCGC	3 cut(s)	1094, 1325, 2015
HinP1I	GCGC	3 cut(s)	1094, 1325, 2015
HincII	GTYRAC	3 cut(s)	1001, 1219, 1516
HindII	GTYRAC	3 cut(s)	1001, 1219, 1516
HindIII	AAGCTT	1 cut(s)	1476
HpaI	GTTAAC	1 cut(s)	1219
HpaII	CCGG	7 cut(s)	64, 138, 152, 771, 794, 1300, 2217
HphI	GGTGA	3 cut(s)	604, 671, 1246
Hpy166II	GTNNAC	7 cut(s)	815, 865, 1001, 1219, 1263, 1516, 2151
Hpy8I	GTNNAC	7 cut(s)	815, 865, 1001, 1219, 1263, 1516, 2151
Hpy99I	CGWCG	2 cut(s)	872, 2048
HpyCH4III	ACNGT	1 cut(s)	1152
HpyCH4IV	ACGT	3 cut(s)	867, 2051, 2162
HpyF3I	CTNAG	8 cut(s)	49, 77, 376, 727, 752, 1275, 1378, 1430
HpySE526I	ACGT	3 cut(s)	867, 2051, 2162
Hsp92I	GRCGYC	3 cut(s)	1068, 1400, 2015
HspAI	GCGC	3 cut(s)	1094, 1325, 2015
KasI	GGCGCC	1 cut(s)	2014
Kpn2I	TCCGGA	4 cut(s)	63, 137, 770, 793
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	1219
KspI	CCGCGG	2 cut(s)	1254, 2062
LmnI	GCTCC	4 cut(s)	516, 1031, 2211, 2222
LweI	GCATC	7 cut(s)	283, 400, 1081, 1404, 1558, 1588, 2105
MabI	ACCWGGT	1 cut(s)	1614
MaeI	CTAG	7 cut(s)	672, 1023, 1271, 1418, 1641, 1788, 2201
MaeII	ACGT	3 cut(s)	867, 2051, 2162
MaeIII	GTNAC	4 cut(s)	1287, 1318, 1790, 1901
MbiI	CCGCTC	1 cut(s)	2006
MfeI	CAATTG	1 cut(s)	977
MflI	RGATCY	2 cut(s)	60, 1877
MhlI	GDGCHC	3 cut(s)	817, 2028, 2208
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	7 cut(s)	190, 581, 913, 941, 977, 992, 1346
MluNI	TGGCCA	1 cut(s)	612
Mly113I	GGCGCC	1 cut(s)	2015
MlyI	GAGTC	4 cut(s)	213, 604, 1006, 1801
MmeI	TCCRAC	3 cut(s)	159, 927, 1835
Mox20I	TGGCCA	1 cut(s)	612
Mph1103I	ATGCAT	1 cut(s)	2098
MroI	TCCGGA	4 cut(s)	63, 137, 770, 793
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	6 cut(s)	189, 408, 666, 1016, 1218, 2281
MslI	CAYNNNNRTG	3 cut(s)	612, 1341, 2139
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	7 cut(s)	64, 138, 152, 771, 794, 1300, 2217
MspR9I	CCNGG	3 cut(s)	540, 1531, 1616
MunI	CAATTG	1 cut(s)	977
Mva1269I	GAATGC	1 cut(s)	1919
MvaI	CCWGG	3 cut(s)	540, 1531, 1616
MvnI	CGCG	4 cut(s)	369, 1253, 1316, 2061
NarI	GGCGCC	1 cut(s)	2015
NcoI	CCATGG	1 cut(s)	1662
NlaIV	GGNNCC	9 cut(s)	625, 769, 1249, 1257, 1304, 2016, 2080, 2170, 2207
NmeAIII	GCCGAG	3 cut(s)	241, 316, 1428
NmuCI	GTSAC	3 cut(s)	1287, 1790, 1901
NsiI	ATGCAT	1 cut(s)	2098
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	1341
PaqCI	CACCTGC	1 cut(s)	223
PceI	AGGCCT	2 cut(s)	144, 1497
PciI	ACATGT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 2159
PctI	GAATGC	1 cut(s)	1919
PfeI	GAWTC	6 cut(s)	134, 344, 355, 416, 448, 835
PleI	GAGTC	4 cut(s)	212, 603, 1005, 1801
PluTI	GGCGCC	1 cut(s)	2018
PmaCI	CACGTG	1 cut(s)	2052
PmlI	CACGTG	1 cut(s)	2052
PpsI	GAGTC	4 cut(s)	212, 603, 1005, 1801
Ppu21I	YACGTR	1 cut(s)	2052
PscI	ACATGT	1 cut(s)	504
PshAI	GACNNNNGTC	1 cut(s)	2052
PshBI	ATTAAT	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	2159
Psp1406I	AACGTT	1 cut(s)	2162
Psp6I	CCWGG	3 cut(s)	538, 1529, 1614
PspCI	CACGTG	1 cut(s)	2052
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	538, 1529, 1614
PspN4I	GGNNCC	9 cut(s)	625, 769, 1249, 1257, 1304, 2016, 2080, 2170, 2207
PspPI	GGNCC	4 cut(s)	635, 1248, 2079, 2169
PstI	CTGCAG	5 cut(s)	202, 220, 247, 1720, 1732
PstNI	CAGNNNCTG	3 cut(s)	425, 1115, 1727
PsuI	RGATCY	2 cut(s)	60, 1877
PvuII	CAGCTG	7 cut(s)	167, 422, 632, 1037, 1341, 1715, 1727
RsaI	GTAC	5 cut(s)	782, 830, 1262, 1559, 1679
RsaNI	GTAC	5 cut(s)	781, 829, 1261, 1558, 1678
RseI	CAYNNNNRTG	3 cut(s)	612, 1341, 2139
SacII	CCGCGG	2 cut(s)	1254, 2062
SalI	GTCGAC	1 cut(s)	999
SaqAI	TTAA	6 cut(s)	189, 408, 666, 1016, 1218, 2281
Sau96I	GGNCC	4 cut(s)	635, 1248, 2079, 2169
SbfI	CCTGCAGG	1 cut(s)	202
SchI	GAGTC	4 cut(s)	213, 604, 1006, 1801
ScrFI	CCNGG	3 cut(s)	540, 1531, 1616
SdaI	CCTGCAGG	1 cut(s)	202
SduI	GDGCHC	3 cut(s)	817, 2028, 2208
SexAI	ACCWGGT	1 cut(s)	1614
SfaNI	GCATC	7 cut(s)	283, 400, 1081, 1404, 1558, 1588, 2105
SfcI	CTRYAG	5 cut(s)	198, 216, 243, 1716, 1728
SfoI	GGCGCC	1 cut(s)	2016
Sfr303I	CCGCGG	2 cut(s)	1254, 2062
SgrBI	CCGCGG	2 cut(s)	1254, 2062
SinI	GGWCC	3 cut(s)	635, 2079, 2169
SmiMI	CAYNNNNRTG	3 cut(s)	612, 1341, 2139
SmlI	CTYRAG	2 cut(s)	907, 1522
SmoI	CTYRAG	2 cut(s)	907, 1522
SpeI	ACTAGT	1 cut(s)	1787
Sse8387I	CCTGCAGG	1 cut(s)	202
Sse9I	AATT	7 cut(s)	190, 581, 913, 941, 977, 992, 1346
SseBI	AGGCCT	2 cut(s)	144, 1497
SspDI	GGCGCC	1 cut(s)	2014
SspMI	CTAG	7 cut(s)	672, 1023, 1271, 1418, 1641, 1788, 2201
StuI	AGGCCT	2 cut(s)	144, 1497
StyD4I	CCNGG	3 cut(s)	538, 1529, 1614
StyI	CCWWGG	1 cut(s)	1662
TaaI	ACNGT	1 cut(s)	1152
TaiI	ACGT	3 cut(s)	870, 2054, 2165
TaqI	TCGA	6 cut(s)	93, 401, 1000, 1125, 1177, 1648
TasI	AATT	7 cut(s)	190, 581, 913, 941, 977, 992, 1346
TatI	WGTACW	2 cut(s)	780, 828
TfiI	GAWTC	6 cut(s)	134, 344, 355, 416, 448, 835
Tru1I	TTAA	6 cut(s)	189, 408, 666, 1016, 1218, 2281
Tru9I	TTAA	6 cut(s)	189, 408, 666, 1016, 1218, 2281
TscAI	CASTG	2 cut(s)	817, 967
TseFI	GTSAC	3 cut(s)	1287, 1790, 1901
Tsp45I	GTSAC	3 cut(s)	1287, 1790, 1901
TspRI	CASTG	2 cut(s)	817, 967
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	3 cut(s)	635, 2079, 2169
VspI	ATTAAT	1 cut(s)	408
XagI	CCTNNNNNAGG	1 cut(s)	543
XapI	RAATTY	1 cut(s)	913
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2008
XmiI	GTMKAC	2 cut(s)	1000, 2150
XspI	CTAG	7 cut(s)	672, 1023, 1271, 1418, 1641, 1788, 2201
Zsp2I	ATGCAT	1 cut(s)	2098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.