Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003386

Physical Location & Seq

Genomic Coordinates Forward (+)

8232613 .. 8239124

Gene Structure 6512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGGTGGATCGAAGGTACAACCACTACTGCGAGCAAATGCAAATGGTGGTTAATGCATTTGATCTGGTGATGGGTTTCAGGGCGGCGGTGCCGTACACAGCTCTAGCTCAGAAGGCAATGTCGCGGCATTTCCGGTGCCTGAAAGACGCGGTAACAGCGCAGTTGAAGCACAGCTGTGAATTGCTGGGAGAGAAAGATGGTGCGGGGAATTCAGGTATAACCAAAGGAGAGACGCCGAGGCTGAAGATGCTAGAGCAAAGCCTGAGACAGCAAAGAGCATTTCATCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAAAGAGGCCTTCCCGAACGTTCTGTCAACATCTTGAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTACCCGAGCGATGCAGATAAGCAACTGTTAGCACAACGGACTGGTCTCTCCAGGTGCCAGGTCTCAAGCTGGTTTGTAAACGCTAGGGTTCGTTTGTGGAAACCCCTGGTGGAACAGATGTTCCAACAAGAAGCCGATGAAGAAGGGGATGTTGCAGCAGCATCGGTAGATCAAGATCAGATGTCAGAGCAATGCTATAACACTAGTGACTACCCAGCAGAAACTCCAATGCCTCCGGCAACAACAACATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

6.08

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	2 - 53	2.7e-23	Associated with HOX
Homeobox_KN	PF05920	123 - 162	1.1e-18	Homeobox KN domain
Homeodomain	PF00046	130 - 162	2.4e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23760 AT2G23760 AT2G23760 AT2G23760 AT4G36870 AT4G36870 AT4G36870 AT4G36870
fragaria_vesca	FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14320 FvH4_1g14721
malus_domestica	MD02G1156800.v1.1 MD15G1271200.v1.1
prunus_persica	Prupe.7G146900_v2.0.a1 Prupe.7G146900_v2.0.a1
pyrus_communis	pycom02g12380 pycom02g12390 pycom15g23510
rosa_chinensis	RchiOBHm_Chr2g0102991
rosa_laevigata	RLG00000017198
rosa_multiflora	Rmu_sc0000388.1_g000020
rosa_roxburghii	Rroxscaffold_2G00140020
rosa_rugosa	Rorug02G0111200 Rorug02G0111300 Rorug02G0111300
rosa_samantha	Rh2AG159400 Rh2BG165900 Rh2CG166100 Rh2DG164800
rosa_wichuraiana	Rw2G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	91, 138, 447
AccII	CGCG	2 cut(s)	127, 152
AciI	CCGC	5 cut(s)	86, 89, 127, 152, 206
AclI	AACGTT	1 cut(s)	343
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	3 cut(s)	20, 98, 395
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	169
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	4 cut(s)	365, 443, 450, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AleI	CACNNNNGTG	1 cut(s)	177
AloI	GAACNNNNNNTCC	4 cut(s)	497, 498, 529, 530
AluBI	AGCT	5 cut(s)	104, 110, 177, 314, 462
AluI	AGCT	5 cut(s)	104, 110, 177, 314, 462
Alw26I	GTCTC	5 cut(s)	227, 262, 313, 443, 460
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	548, 551
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	397
BanI	GGYRCC	3 cut(s)	91, 138, 447
BbvI	GCAGC	2 cut(s)	560, 563
BccI	CCATC	4 cut(s)	67, 194, 286, 295
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	4 cut(s)	367, 445, 452, 500
BcoDI	GTCTC	5 cut(s)	227, 262, 313, 443, 460
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	107, 254, 477, 597
BisI	GCNGC	4 cut(s)	87, 128, 549, 552
BlsI	GCNGC	4 cut(s)	88, 129, 550, 553
Bme1390I	CCNGG	4 cut(s)	367, 445, 452, 500
BmeT110I	CYCGRG	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	93, 140, 449
BmrFI	CCNGG	4 cut(s)	367, 445, 452, 500
BmsI	GCATC	3 cut(s)	240, 394, 563
BpmI	CTGGAG	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	379, 442
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	3 cut(s)	313, 443, 460
BsaJI	CCNNGG	2 cut(s)	239, 498
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	2 cut(s)	126, 590
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	4 cut(s)	367, 445, 452, 500
BseDI	CCNNGG	2 cut(s)	239, 498
BseGI	GGATG	2 cut(s)	303, 547
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	2 cut(s)	126, 590
BseMII	CTCAG	2 cut(s)	125, 257
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	560, 563
BseYI	CCCAGC	2 cut(s)	187, 607
Bsh1236I	CGCG	2 cut(s)	127, 152
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	3 cut(s)	91, 138, 447
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	136, 629
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	5 cut(s)	227, 262, 313, 443, 460
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	3 cut(s)	313, 443, 460
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	10, 64, 562, 568
BspACI	CCGC	5 cut(s)	86, 89, 127, 152, 206
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	124, 258
BspFNI	CGCG	2 cut(s)	127, 152
BspLI	GGNNCC	3 cut(s)	93, 140, 449
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	3 cut(s)	91, 138, 447
BspTNI	GGTCTC	3 cut(s)	313, 443, 460
BsrDI	GCAATG	2 cut(s)	126, 590
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	239, 498
BssMI	GATC	4 cut(s)	10, 64, 562, 568
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	4 cut(s)	367, 445, 452, 500
Bst4CI	ACNGT	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	111, 266
BstF5I	GGATG	2 cut(s)	303, 547
BstFNI	CGCG	2 cut(s)	127, 152
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	13, 67, 565, 571
BstMAI	GTCTC	5 cut(s)	227, 262, 313, 443, 460
BstMBI	GATC	4 cut(s)	10, 64, 562, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 158, 169, 250, 376
BstNI	CCWGG	4 cut(s)	367, 445, 452, 500
BstSCI	CCNGG	4 cut(s)	365, 443, 450, 498
BstUI	CGCG	2 cut(s)	127, 152
BstV1I	GCAGC	2 cut(s)	560, 563
BsuRI	GGCC	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	303, 547
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	2 cut(s)	158, 244
Csp6I	GTAC	3 cut(s)	19, 97, 394
CviQI	GTAC	3 cut(s)	19, 97, 394
DdeI	CTNAG	2 cut(s)	111, 266
DpnI	GATC	4 cut(s)	12, 66, 564, 570
DpnII	GATC	4 cut(s)	10, 64, 562, 568
Eco147I	AGGCCT	1 cut(s)	333
Eco31I	GGTCTC	3 cut(s)	313, 443, 460
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	4 cut(s)	365, 443, 450, 498
EcoT22I	ATGCAT	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	227
FaiI	YATR	2 cut(s)	221, 591
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	87, 128, 549, 552
FokI	GGATG	2 cut(s)	310, 554
Fsp4HI	GCNGC	4 cut(s)	87, 128, 549, 552
FspBI	CTAG	4 cut(s)	107, 254, 477, 597
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	87, 128, 549, 552
GsaI	CCCAGC	2 cut(s)	191, 611
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	136, 629
HgaI	GACGC	2 cut(s)	158, 244
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	312
HpaII	CCGG	2 cut(s)	136, 629
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	99, 352, 472
Hpy188I	TCNGA	4 cut(s)	114, 291, 573, 580
Hpy188III	TCNNGA	3 cut(s)	338, 358, 566
Hpy8I	GTNNAC	3 cut(s)	99, 352, 472
HpyAV	CCTTC	4 cut(s)	9, 109, 344, 530
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	43, 59, 407, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 158, 169, 250, 376
HpyF3I	CTNAG	2 cut(s)	111, 266
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	236
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	10, 64, 562, 568
Lsp1109I	GCAGC	2 cut(s)	560, 563
LweI	GCATC	3 cut(s)	240, 394, 563
MaeI	CTAG	4 cut(s)	107, 254, 477, 597
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	154, 599
MalI	GATC	4 cut(s)	12, 66, 564, 570
MboI	GATC	4 cut(s)	10, 64, 562, 568
MboII	GAAGA	2 cut(s)	259, 545
MluCI	AATT	2 cut(s)	182, 211
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	3 cut(s)	234, 323, 636
Mph1103I	ATGCAT	1 cut(s)	61
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	2 cut(s)	136, 629
MspR9I	CCNGG	4 cut(s)	367, 445, 452, 500
MvaI	CCWGG	4 cut(s)	367, 445, 452, 500
MvnI	CGCG	2 cut(s)	127, 152
MwoI	GCNNNNNNNGC	5 cut(s)	116, 158, 169, 250, 376
NdeII	GATC	4 cut(s)	10, 64, 562, 568
NlaIV	GGNNCC	3 cut(s)	93, 140, 449
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	599
NsiI	ATGCAT	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	333
PkrI	GCNGC	4 cut(s)	88, 129, 550, 553
Psp1406I	AACGTT	1 cut(s)	343
Psp6I	CCWGG	4 cut(s)	365, 443, 450, 498
PspFI	CCCAGC	2 cut(s)	187, 607
PspGI	CCWGG	4 cut(s)	365, 443, 450, 498
PspN4I	GGNNCC	3 cut(s)	93, 140, 449
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	20, 98, 395
RsaNI	GTAC	3 cut(s)	19, 97, 394
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	4 cut(s)	87, 128, 549, 552
Sau3AI	GATC	4 cut(s)	10, 64, 562, 568
ScrFI	CCNGG	4 cut(s)	367, 445, 452, 500
SfaNI	GCATC	3 cut(s)	240, 394, 563
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	358, 457
SmoI	CTYRAG	2 cut(s)	358, 457
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	2 cut(s)	182, 211
SseBI	AGGCCT	1 cut(s)	333
SsiI	CCGC	5 cut(s)	86, 89, 127, 152, 206
SspMI	CTAG	4 cut(s)	107, 254, 477, 597
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	4 cut(s)	365, 443, 450, 498
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	182, 211
TauI	GCSGC	2 cut(s)	89, 130
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	2 cut(s)	548, 551
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	2 cut(s)	275, 546
TspGWI	ACGGA	1 cut(s)	445
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	4 cut(s)	107, 254, 477, 597
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.