Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Reverse (-)

8803402 .. 8807403

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAGTTTCTCAGGCGGAAATGCACCCAGGAGTGCGTGTTCGCGCCGTACTTCCCGCCGGACCAGCCCCAGAAATTCGCCAACGTTCACAAAGTGTTTGGCGCCAGCAATGTGGCCAAGATTCTTAACGAGTTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCCTTGGCCTACGAGGCCGAGGCTCGTCTCCGCGACCCCGTCTACGGCTGCGTGGGGCTCATTTCTATTCTTCAGCAGAGGCTGAAGCAAGTCCAGCTTGATCTCTACAATGCCAGGAAGGAGCTGGCTACTTACATGGGCCCGCAGGCCATGCTCTCCATTCTTCAGCCGGCTTCTTACATGGGCCCGCAGCAGATTCAGGGAGGCAACGCAGGGACTTCCTCGGCGGTTGTGCCGTACAACATGTCTCCGATGATGGGTATTTCGACGGGTGGTGGTTCTTCCGGTCAGTTAATGGTGAGAGAGCAGCAACAGCAGCAGCAGATGTTTGAGGCTCAGCAACTGTTGGCAGCGAGAGAGCAGCAGGAGATGTTGAGAAGCTTTGAGCAGAACAAACAGAGCCAAGAAGGTCATCATCAGCTGAGGTTTAACAGTGGGTTTGACTCGGTCACTGGAACTGGGTTGGCTCAGATGAGTCCTACTTCACCAGCAGCGGCTAATAATGCAAACATCCCACCTGCTTTGGCTCTGGGGTTTGATCACAGCCCTTATCAGATTCAGCAACAGCAACAAGAGCATCACCACCACCATCTCCAGCTACAGGCTTTGCTTCAGTCCCAGCAACAACAATCTCAGCAACCGCAGCAGCAACAACCACCGCAGCTGCTGCCGCATAAGGTGGAAGGCGAGGAGGGCAGAAGTAGGAGTGTGGGCCCGTCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

307

Amino Acids

33.75

Weight (kDa)

7.14

Isoelectric Point (pI)

86.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 103	1.6e-41	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	721
Acc16I	TGCGCA	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	4 cut(s)	74, 180, 188, 228
AclI	AACGTT	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	13, 104
AcuI	CTGAAG	4 cut(s)	251, 299, 344, 791
AcyI	GRCGYC	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	80, 434
AfiI	CCNNNNNNNGG	3 cut(s)	239, 452, 796
AflIII	ACRYGT	1 cut(s)	438
AjnI	CCWGG	2 cut(s)	57, 308
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	292, 319, 576, 616, 793, 859
AluI	AGCT	6 cut(s)	292, 319, 576, 616, 793, 859
Alw26I	GTCTC	2 cut(s)	227, 447
AlwNI	CAGNNNCTG	3 cut(s)	277, 538, 862
AoxI	GGCC	7 cut(s)	144, 201, 210, 334, 342, 379, 907
ApaI	GGGCCC	3 cut(s)	338, 383, 911
ApoI	RAATTY	2 cut(s)	13, 104
AspLEI	GCGC	5 cut(s)	26, 76, 134, 170, 180
AspS9I	GGNCC	7 cut(s)	91, 334, 335, 379, 380, 907, 908
AsuHPI	GGTGA	4 cut(s)	202, 505, 672, 767
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	3 cut(s)	338, 383, 911
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	4 cut(s)	255, 338, 383, 911
BbvCI	CCTCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	445, 792
BceAI	ACGGC	3 cut(s)	61, 256, 415
BciT130I	CCWGG	2 cut(s)	59, 310
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	227, 447
BfmI	CTRYAG	1 cut(s)	794
BfoI	RGCGCY	2 cut(s)	135, 171
BfuAI	ACCTGC	1 cut(s)	721
BglI	GCCNNNNNGGC	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	59, 310
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	7 cut(s)	91, 334, 335, 379, 380, 907, 908
BmiI	GGNNCC	4 cut(s)	133, 336, 381, 909
BmrFI	CCNGG	2 cut(s)	59, 310
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	773
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	57, 198, 213, 417
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 452, 796
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	652, 658
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	59, 310
BseDI	CCNNGG	4 cut(s)	57, 198, 213, 417
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	239, 452, 796
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	5 cut(s)	55, 545, 608, 677, 842
BseNI	ACTGG	2 cut(s)	652, 658
BseRI	GAGGAG	1 cut(s)	899
BseSI	GKGCMC	3 cut(s)	338, 383, 911
BseYI	CCCAGC	1 cut(s)	813
Bsh1236I	CGCG	4 cut(s)	74, 180, 188, 228
BshFI	GGCC	7 cut(s)	146, 203, 212, 336, 344, 381, 909
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	89, 365, 480
BslFI	GGGAC	2 cut(s)	424, 796
BslI	CCNNNNNNNGG	3 cut(s)	239, 452, 796
BsmAI	GTCTC	2 cut(s)	227, 447
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	424, 796
BsnI	GGCC	7 cut(s)	146, 203, 212, 336, 344, 381, 909
Bsp120I	GGGCCC	3 cut(s)	334, 379, 907
Bsp1286I	GDGCHC	4 cut(s)	255, 338, 383, 911
Bsp143I	GATC	2 cut(s)	295, 733
Bsp1720I	GCTNAGC	1 cut(s)	531
BspANI	GGCC	7 cut(s)	146, 203, 212, 336, 344, 381, 909
BspCNI	CTCAG	5 cut(s)	54, 544, 609, 676, 841
BspFNI	CGCG	4 cut(s)	74, 180, 188, 228
BspLI	GGNNCC	4 cut(s)	133, 336, 381, 909
BspMI	ACCTGC	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	652, 658
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	4 cut(s)	57, 198, 213, 417
BssMI	GATC	2 cut(s)	295, 733
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	59, 310
Bst4CI	ACNGT	2 cut(s)	540, 629
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	2 cut(s)	346, 862
BstC8I	GCNNGC	7 cut(s)	31, 136, 321, 338, 342, 366, 383
BstDEI	CTNAG	5 cut(s)	41, 531, 617, 663, 828
BstF5I	GGATG	1 cut(s)	705
BstFNI	CGCG	4 cut(s)	74, 180, 188, 228
BstH2I	RGCGCY	2 cut(s)	135, 171
BstHHI	GCGC	5 cut(s)	26, 76, 134, 170, 180
BstKTI	GATC	2 cut(s)	298, 736
BstMAI	GTCTC	2 cut(s)	227, 447
BstMBI	GATC	2 cut(s)	295, 733
BstNI	CCWGG	2 cut(s)	59, 310
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	57, 308
BstSFI	CTRYAG	1 cut(s)	794
BstSLI	GKGCMC	3 cut(s)	338, 383, 911
BstUI	CGCG	4 cut(s)	74, 180, 188, 228
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	7 cut(s)	146, 203, 212, 336, 344, 381, 909
BtsCI	GGATG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	634, 645
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	7 cut(s)	31, 136, 321, 338, 342, 366, 383
CaiI	CAGNNNCTG	3 cut(s)	277, 538, 862
CfoI	GCGC	5 cut(s)	26, 76, 134, 170, 180
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	7 cut(s)	91, 334, 335, 379, 380, 907, 908
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	79, 433
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	4 cut(s)	331, 346, 376, 439
CviQI	GTAC	2 cut(s)	79, 433
DdeI	CTNAG	5 cut(s)	41, 531, 617, 663, 828
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	297, 735
DpnII	GATC	2 cut(s)	295, 733
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	4 cut(s)	255, 338, 383, 911
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	251, 299, 344, 791
EcoRII	CCWGG	2 cut(s)	57, 308
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	4 cut(s)	255, 338, 383, 911
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	334, 349, 379, 442
FaiI	YATR	5 cut(s)	332, 347, 377, 440, 870
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	424, 796
FatI	CATG	4 cut(s)	330, 345, 375, 438
FauI	CCCGC	3 cut(s)	93, 345, 390
FbaI	TGATCA	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	1 cut(s)	692
FriOI	GRGCYC	4 cut(s)	255, 338, 383, 911
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	5 cut(s)	25, 75, 133, 169, 179
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	2 cut(s)	135, 171
HaeIII	GGCC	7 cut(s)	146, 203, 212, 336, 344, 381, 909
HapII	CCGG	3 cut(s)	89, 365, 480
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	5 cut(s)	26, 76, 134, 170, 180
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	334, 349, 379, 442
Hin6I	GCGC	5 cut(s)	24, 74, 132, 168, 178
HinP1I	GCGC	5 cut(s)	24, 74, 132, 168, 178
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	5 cut(s)	151, 391, 638, 670, 751
HpaII	CCGG	3 cut(s)	89, 365, 480
HphI	GGTGA	4 cut(s)	202, 505, 672, 767
Hpy166II	GTNNAC	3 cut(s)	118, 193, 238
Hpy188I	TCNGA	3 cut(s)	447, 666, 750
Hpy8I	GTNNAC	3 cut(s)	118, 193, 238
Hpy99I	CGWCG	2 cut(s)	10, 466
HpyAV	CCTTC	3 cut(s)	307, 596, 872
HpyCH4III	ACNGT	2 cut(s)	540, 629
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	33, 54, 701
HpyF3I	CTNAG	5 cut(s)	41, 531, 617, 663, 828
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	334, 349, 379, 442
HspAI	GCGC	5 cut(s)	24, 74, 132, 168, 178
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	364
KroNI	GCCGGC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	295, 733
LmnI	GCTCC	1 cut(s)	316
LweI	GCATC	1 cut(s)	781
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	2 cut(s)	297, 735
MboI	GATC	2 cut(s)	295, 733
MboII	GAAGA	3 cut(s)	257, 350, 468
MhlI	GDGCHC	4 cut(s)	255, 338, 383, 911
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	2 cut(s)	13, 104
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	632, 679
Mox20I	TGGCCA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	156, 488, 624
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	3 cut(s)	616, 689, 859
MspI	CCGG	3 cut(s)	89, 365, 480
MspR9I	CCNGG	2 cut(s)	59, 310
MvaI	CCWGG	2 cut(s)	59, 310
MvnI	CGCG	4 cut(s)	74, 180, 188, 228
NaeI	GCCGGC	1 cut(s)	366
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	295, 733
NgoMIV	GCCGGC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	334, 349, 379, 442
NlaIV	GGNNCC	4 cut(s)	133, 336, 381, 909
NmeAIII	GCCGAG	2 cut(s)	238, 398
NmuCI	GTSAC	1 cut(s)	643
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	721
PciI	ACATGT	1 cut(s)	438
PdiI	GCCGGC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	151, 391, 751
PflFI	GACNNNGTC	2 cut(s)	233, 641
PleI	GAGTC	2 cut(s)	632, 678
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	2 cut(s)	632, 678
PscI	ACATGT	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	57, 308
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	57, 308
PspN4I	GGNNCC	4 cut(s)	133, 336, 381, 909
PspOMI	GGGCCC	3 cut(s)	334, 379, 907
PspPI	GGNCC	7 cut(s)	91, 334, 335, 379, 380, 907, 908
PstNI	CAGNNNCTG	3 cut(s)	277, 538, 862
PsyI	GACNNNGTC	2 cut(s)	233, 641
PvuII	CAGCTG	2 cut(s)	616, 859
RsaI	GTAC	2 cut(s)	80, 434
RsaNI	GTAC	2 cut(s)	79, 433
SaqAI	TTAA	3 cut(s)	156, 488, 624
Sau3AI	GATC	2 cut(s)	295, 733
Sau96I	GGNCC	7 cut(s)	91, 334, 335, 379, 380, 907, 908
SchI	GAGTC	2 cut(s)	632, 679
ScrFI	CCNGG	2 cut(s)	59, 310
SduI	GDGCHC	4 cut(s)	255, 338, 383, 911
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	794
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	13, 104
SspDI	GGCGCC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	57, 308
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	540, 629
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	461
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	2 cut(s)	13, 104
TauI	GCSGC	2 cut(s)	692, 868
TfiI	GAWTC	3 cut(s)	151, 391, 751
Tru1I	TTAA	3 cut(s)	156, 488, 624
Tru9I	TTAA	3 cut(s)	156, 488, 624
TscAI	CASTG	2 cut(s)	634, 652
TseFI	GTSAC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	643
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	634, 652
Tth111I	GACNNNGTC	2 cut(s)	233, 641
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	13, 104
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.