Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Forward (+)

10574782 .. 10577741

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTACTCCGTGAACTTTCCATTCTAACACCTCACGAACCAAGAGCTCTGATACCACTGTTGGGAAAACAAAATGCCTACGTCCACGGGGCAGCAACAACAAGAACTTCCACTATGATAATGTGGTTTGGGCTCTCTGCCTCTTTTGGTTTCTGCACTCTCTTTCTGCCTTCTTTTCTCCTTGTGCTTCTTCGACTGGCGATATGGGATTATATATCCCATACTCTCTCTCCAGCTCTCTCTCCAAAGCCGGCTGCAGGTTTTTCTCTTTTCCCTGAGGGACTGGCCCAGGGACTGGCCCATCAGCTCATGCTCCATAGGCGTGTGCTCTTCGATGATCATAAAGGATTGGAGGAAGCCCTTGACGAAACAGTGTGTATCAATGGAAATAGTGTATGTGAAGGACTAACGGTTCGAGGGAATTATTATGTGAACATTAACCAAGTAGGGGAAGGTGCTCGTTGGCGCCGAAAAACTGGCCAAGAAGTGTACTCTCCACTTGTTTTGGCTTTCACACATGAGAAATTGGAGAAGTGGACTGCATCTCATTTGACAAAAGCATCTACAATGGATTCGAATTACGCCTTGCCGCCCAATGTAGCGCTGATTTCTCTTCAGGAGTTGGATGATGGAAGTGTACTTGTCCGTCTAGCACATCTATATGAGGCAGCTGAAGCCCTTGAGTACTCGACATTAACCAAAGTTGAACTGAAGAAGATGTTTACAGGAAAAATGATAAAGGAAGTGAAGGAGATGAGCTTGTCAGCAAACCAAGACAAGTCGGAGATGAAGAGGATGGAATGGAAAGTTGAAGGTAATGACACAGAGCCTATCCCAGTTAGAGGGGGACCTGTAAATAATTCAACTCTTCTTGTTGAGCTTGGACCCATGGAGATACGAACTTTCTTGCTGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

306

Amino Acids

34.18

Weight (kDa)

6.52

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro38C2	PF17677	199 - 302	3e-08	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	478
AcuI	CTGAAG	3 cut(s)	599, 693, 731
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	4 cut(s)	6, 491, 639, 686
AfeI	AGCGCT	1 cut(s)	603
AfiI	CCNNNNNNNGG	5 cut(s)	62, 257, 295, 448, 842
AgsI	TTSAA	3 cut(s)	707, 812, 864
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
AluBI	AGCT	6 cut(s)	47, 236, 307, 671, 759, 880
AluI	AGCT	6 cut(s)	47, 236, 307, 671, 759, 880
Alw21I	GWGCWC	3 cut(s)	49, 330, 460
AlwNI	CAGNNNCTG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	603
AoxI	GGCC	3 cut(s)	285, 297, 478
ApeKI	GCWGC	3 cut(s)	92, 254, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	2 cut(s)	468, 604
AspS9I	GGNCC	4 cut(s)	286, 298, 848, 884
AsuII	TTCGAA	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	848, 884
AxyI	CCTNAGG	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BalI	TGGCCA	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	2 cut(s)	49, 135
Bbv12I	GWGCWC	3 cut(s)	49, 330, 460
BbvI	GCAGC	3 cut(s)	104, 241, 680
BccI	CCATC	3 cut(s)	309, 623, 790
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	2 cut(s)	469, 605
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	93, 255, 590, 669
BlsI	GCNGC	4 cut(s)	94, 256, 591, 670
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	848, 884
BmgT120I	GGNCC	4 cut(s)	286, 298, 848, 884
BmiI	GGNNCC	3 cut(s)	467, 849, 886
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	2 cut(s)	551, 569
BmuI	ACTGGG	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	701
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	85, 288, 289, 888
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 257, 295, 448, 842
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	5 cut(s)	201, 288, 300, 481, 836
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	85, 288, 289, 888
BseGI	GGATG	2 cut(s)	631, 801
BseLI	CCNNNNNNNGG	5 cut(s)	62, 257, 295, 448, 842
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	5 cut(s)	201, 288, 300, 481, 836
BseXI	GCAGC	3 cut(s)	104, 241, 680
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	287, 299, 480
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	3 cut(s)	49, 330, 460
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	3 cut(s)	294, 306, 861
BslI	CCNNNNNNNGG	5 cut(s)	62, 257, 295, 448, 842
BsmFI	GGGAC	3 cut(s)	294, 306, 861
BsnI	GGCC	3 cut(s)	287, 299, 480
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	4 cut(s)	49, 135, 330, 460
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	888
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	3 cut(s)	287, 299, 480
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	467, 849, 886
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	5 cut(s)	201, 288, 300, 481, 836
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	4 cut(s)	85, 288, 289, 888
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	60, 373, 412
Bst6I	CTCTTC	4 cut(s)	335, 618, 785, 873
BstACI	GRCGYC	1 cut(s)	466
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	85, 888
BstF5I	GGATG	2 cut(s)	631, 801
BstH2I	RGCGCY	2 cut(s)	469, 605
BstHHI	GCGC	2 cut(s)	468, 604
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 674
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	104, 241, 680
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	287, 299, 480
BtgI	CCRYGG	2 cut(s)	85, 888
BtsCI	GGATG	2 cut(s)	631, 801
BtsIMutI	CAGTG	2 cut(s)	56, 378
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	2 cut(s)	468, 604
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	4 cut(s)	286, 298, 848, 884
Csp6I	GTAC	4 cut(s)	5, 490, 638, 685
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	3 cut(s)	310, 518, 889
CviQI	GTAC	4 cut(s)	5, 490, 638, 685
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	1 cut(s)	467
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	335, 618, 785, 873
EarI	CTCTTC	4 cut(s)	335, 618, 785, 873
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	888
Eco24I	GRGCYC	2 cut(s)	49, 135
Eco47I	GGWCC	2 cut(s)	848, 884
Eco47III	AGCGCT	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	3 cut(s)	599, 693, 731
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	888
EcoT38I	GRGCYC	2 cut(s)	49, 135
EgeI	GGCGCC	1 cut(s)	467
EheI	GGCGCC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	3 cut(s)	313, 521, 892
FaqI	GGGAC	3 cut(s)	294, 306, 861
FatI	CATG	3 cut(s)	309, 517, 888
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	93, 255, 590, 669
FokI	GGATG	2 cut(s)	638, 808
FriOI	GRGCYC	2 cut(s)	49, 135
Fsp4HI	GCNGC	4 cut(s)	93, 255, 590, 669
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	2 cut(s)	467, 603
GluI	GCNGC	4 cut(s)	93, 255, 590, 669
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	2 cut(s)	469, 605
HaeIII	GGCC	3 cut(s)	287, 299, 480
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	2 cut(s)	468, 604
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	313, 521, 892
Hin6I	GCGC	2 cut(s)	466, 602
HinP1I	GCGC	2 cut(s)	466, 602
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	7 cut(s)	14, 85, 433, 490, 537, 638, 723
Hpy188I	TCNGA	2 cut(s)	51, 784
Hpy188III	TCNNGA	2 cut(s)	35, 617
Hpy8I	GTNNAC	7 cut(s)	14, 85, 433, 490, 537, 638, 723
HpyAV	CCTTC	5 cut(s)	180, 395, 446, 742, 806
HpyCH4III	ACNGT	3 cut(s)	60, 373, 412
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	156, 257, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 674
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	3 cut(s)	313, 521, 892
HspAI	GCGC	2 cut(s)	466, 602
KasI	GGCGCC	1 cut(s)	465
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	3 cut(s)	104, 241, 680
LweI	GCATC	2 cut(s)	551, 569
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	7 cut(s)	182, 322, 605, 724, 727, 802, 860
MhlI	GDGCHC	4 cut(s)	49, 135, 330, 460
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	4 cut(s)	421, 524, 577, 859
MluNI	TGGCCA	1 cut(s)	480
Mly113I	GGCGCC	1 cut(s)	466
MmeI	TCCRAC	2 cut(s)	603, 762
MnlI	CCTC	8 cut(s)	42, 151, 271, 346, 410, 658, 786, 836
Mox20I	TGGCCA	1 cut(s)	480
MroNI	GCCGGC	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	2 cut(s)	438, 695
MslI	CAYNNNNRTG	2 cut(s)	321, 660
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	319, 674
NaeI	GCCGGC	1 cut(s)	252
NarI	GGCGCC	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	888
NdeII	GATC	1 cut(s)	337
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	313, 521, 892
NlaIV	GGNNCC	3 cut(s)	467, 849, 886
NspV	TTCGAA	1 cut(s)	575
PasI	CCCWGGG	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PdiI	GCCGGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	94, 256, 591, 670
PluTI	GGCGCC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	467, 849, 886
PspPI	GGNCC	4 cut(s)	286, 298, 848, 884
PspPPI	RGGWCCY	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	4 cut(s)	6, 491, 639, 686
RsaNI	GTAC	4 cut(s)	5, 490, 638, 685
RseI	CAYNNNNRTG	2 cut(s)	321, 660
SacI	GAGCTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	438, 695
SatI	GCNGC	4 cut(s)	93, 255, 590, 669
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	4 cut(s)	286, 298, 848, 884
ScaI	AGTACT	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	4 cut(s)	49, 135, 330, 460
SfaNI	GCATC	2 cut(s)	551, 569
SfcI	CTRYAG	1 cut(s)	255
SfoI	GGCGCC	1 cut(s)	467
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	2 cut(s)	848, 884
SmiMI	CAYNNNNRTG	2 cut(s)	321, 660
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	4 cut(s)	421, 524, 577, 859
SsiI	CCGC	1 cut(s)	590
SspDI	GGCGCC	1 cut(s)	465
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	3 cut(s)	60, 373, 412
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	193, 333, 415, 575, 689
TasI	AATT	4 cut(s)	421, 524, 577, 859
TatI	WGTACW	3 cut(s)	489, 637, 684
TauI	GCSGC	1 cut(s)	592
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	438, 695
Tru9I	TTAA	2 cut(s)	438, 695
TscAI	CASTG	2 cut(s)	63, 378
TseI	GCWGC	3 cut(s)	92, 254, 668
TspDTI	ATGAA	1 cut(s)	803
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	63, 378
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	848, 884
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.