Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Forward (+)

15439876 .. 15443815

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G137900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCGTCGTCAAACTCACCGTGCGCAGCCTGTAAGTTTCTCAGGCGAAAATGCACTCAGGAGTGCGTGTTCGCGCCTTATTTCCCACCGGACCAGCCCCAGAAGTTCGCCAACGTCCACAAGGTATTCGGAGCCAGCAATGTCGCCAAGATCCTCAACGAGCTCAACGCTACGCAGCGTGAAGACGCCGTGAACTCGCTGGCCTACGAAGCTGAGGCCCGCCTCCGTGACCCGGTCTACGGATGCGTGGGCCTCATCTCCATCCTCCAGCAACGGCTCAAGCAAGTCCAGGCTGACCTCTACAACGCCAAGAAGGAACTCGCCACTTACATGGGTCCTCAAGCCATGCTCTCCATTCTTCAGCCACCACCAACTTACATGCCCCAACAGCTGCAAGGAAACGCTTCTTCTTCGGCTGTTTCGCCGTACACCATGTCTCCGATGATGGGCATTCCGACCGGCCCTACTTCCGGGCAGTTGATGATTCGAGAGCCGCAGCAGCAACAACAACAACAGCAAATGTTTGAGGCTCAGCAGTTGGCGGCGGCTGTGGCGGCGAGAGAGCAGCAGGAGATGTTCAGGAGTTTTGATCAAAGTAAACAGTCAATGCAGCAAGGTCAAGAGCATGTGAGATTCAACAGTGGGTTTGACTTGTCCCCCGGCTCAGTGACCGTGAGCGGGTTCACTCAGATGGCTGGAGCAGTGTGCAATGCTGTTTCTCCTTCTTTGGCTCTGGGGTTTGATAGCAATTCTTATCATCATCCGATTCAGCCGCAACAATCACATCATCATCATCAGCTTCAGCTTCAGGCTCAGCTCTTGCTACAAACCCAACAGCCTCAAGGGCAGCATCAGAACCAGCAATCACAGCAGACGCAGCTGCAGCAAAAGTCCGATCCAGGCGAGGAGGGCGGTAGGAGTGTGGGTCCCTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

313

Amino Acids

34.38

Weight (kDa)

7.1

Isoelectric Point (pI)

76.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	74
AciI	CCGC	8 cut(s)	220, 494, 542, 545, 554, 678, 773, 912
AclWI	GGATC	2 cut(s)	145, 890
AcuI	CTGAAG	3 cut(s)	344, 785, 791
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	5 cut(s)	232, 239, 446, 470, 678
AgsI	TTSAA	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	288, 898
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	7 cut(s)	163, 212, 391, 799, 805, 817, 880
AluI	AGCT	7 cut(s)	163, 212, 391, 799, 805, 817, 880
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	145, 890
AoxI	GGCC	4 cut(s)	201, 216, 250, 460
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	26, 76
AspS9I	GGNCC	6 cut(s)	91, 217, 250, 335, 461, 926
AsuC2I	CCSGG	3 cut(s)	233, 472, 660
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	3 cut(s)	91, 335, 926
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	213
BccI	CCATC	3 cut(s)	269, 439, 685
BceAI	ACGGC	3 cut(s)	173, 290, 409
BciT130I	CCWGG	2 cut(s)	290, 900
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	3 cut(s)	233, 472, 660
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	881
BglI	GCCNNNNNGGC	1 cut(s)	844
BlpI	GCTNAGC	2 cut(s)	531, 813
Bme1390I	CCNGG	5 cut(s)	233, 290, 472, 660, 900
Bme18I	GGWCC	3 cut(s)	91, 335, 926
BmgT120I	GGNCC	6 cut(s)	91, 217, 250, 335, 461, 926
BmiI	GGNNCC	4 cut(s)	133, 336, 927, 928
BmrFI	CCNGG	5 cut(s)	233, 290, 472, 660, 900
BmsI	GCATC	2 cut(s)	233, 859
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	251, 717
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu1102I	GCTNAGC	2 cut(s)	531, 813
BpuEI	CTTGAG	3 cut(s)	263, 324, 825
BpuMI	CCSGG	3 cut(s)	233, 472, 660
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	658
BsaWI	WCCGGW	1 cut(s)	88
BsaXI	ACNNNNNCTCC	5 cut(s)	53, 83, 421, 451, 910
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 239, 446, 470, 678
Bse118I	RCCGGY	1 cut(s)	458
Bse3DI	GCAATG	2 cut(s)	145, 715
BseBI	CCWGG	2 cut(s)	290, 900
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	3 cut(s)	248, 261, 760
BseLI	CCNNNNNNNGG	5 cut(s)	232, 239, 446, 470, 678
BseMI	GCAATG	2 cut(s)	145, 715
BseMII	CTCAG	7 cut(s)	55, 71, 204, 545, 678, 701, 827
BseRI	GAGGAG	1 cut(s)	920
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	203, 218, 252, 462
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	89, 233, 459, 471, 660
BslFI	GGGAC	2 cut(s)	640, 912
BslI	CCNNNNNNNGG	5 cut(s)	232, 239, 446, 470, 678
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	640, 912
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	203, 218, 252, 462
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	150, 589, 895
Bsp1720I	GCTNAGC	2 cut(s)	531, 813
BspACI	CCGC	8 cut(s)	220, 494, 542, 545, 554, 678, 773, 912
BspANI	GGCC	4 cut(s)	203, 218, 252, 462
BspCNI	CTCAG	7 cut(s)	54, 70, 205, 544, 677, 700, 826
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	4 cut(s)	133, 336, 927, 928
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	2 cut(s)	145, 890
BsrBI	CCGCTC	1 cut(s)	678
BsrDI	GCAATG	2 cut(s)	145, 715
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	3 cut(s)	150, 589, 895
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	290, 900
Bst4CI	ACNGT	4 cut(s)	21, 603, 641, 673
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	136, 201, 220
BstDEI	CTNAG	7 cut(s)	41, 57, 213, 531, 664, 687, 813
BstF5I	GGATG	3 cut(s)	248, 261, 760
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	26, 76
BstKTI	GATC	3 cut(s)	153, 592, 898
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	3 cut(s)	150, 589, 895
BstMCI	CGRYCG	1 cut(s)	459
BstNI	CCWGG	2 cut(s)	290, 900
BstNSI	RCATGY	2 cut(s)	382, 629
BstSCI	CCNGG	5 cut(s)	231, 288, 470, 658, 898
BstSFI	CTRYAG	1 cut(s)	881
BstUI	CGCG	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	203, 218, 252, 462
BtsCI	GGATG	3 cut(s)	248, 261, 760
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	646, 672, 708
Cac8I	GCNNGC	3 cut(s)	136, 201, 220
CfoI	GCGC	2 cut(s)	26, 76
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	6 cut(s)	91, 217, 250, 335, 461, 926
CseI	GACGC	2 cut(s)	194, 883
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	5 cut(s)	331, 346, 379, 433, 626
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	7 cut(s)	41, 57, 213, 531, 664, 687, 813
DpnI	GATC	3 cut(s)	152, 591, 897
DpnII	GATC	3 cut(s)	150, 589, 895
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	91, 335, 926
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	3 cut(s)	344, 785, 791
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	2 cut(s)	335, 926
EcoRII	CCWGG	2 cut(s)	288, 898
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	5 cut(s)	334, 349, 382, 436, 629
FaiI	YATR	5 cut(s)	332, 347, 380, 434, 627
FaqI	GGGAC	2 cut(s)	640, 912
FatI	CATG	5 cut(s)	330, 345, 378, 432, 625
FauI	CCCGC	2 cut(s)	227, 671
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	3 cut(s)	248, 255, 747
FriOI	GRGCYC	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	2 cut(s)	25, 75
GsuI	CTGGAG	2 cut(s)	251, 717
HaeIII	GGCC	4 cut(s)	203, 218, 252, 462
HapII	CCGG	5 cut(s)	89, 233, 459, 471, 660
HgaI	GACGC	2 cut(s)	194, 883
HhaI	GCGC	2 cut(s)	26, 76
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	334, 349, 382, 436, 629
Hin6I	GCGC	2 cut(s)	24, 74
HinP1I	GCGC	2 cut(s)	24, 74
HinfI	GANTC	3 cut(s)	484, 633, 766
HpaII	CCGG	5 cut(s)	89, 233, 459, 471, 660
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	6 cut(s)	118, 193, 238, 429, 599, 684
Hpy188I	TCNGA	7 cut(s)	131, 441, 456, 690, 765, 855, 895
Hpy188III	TCNNGA	4 cut(s)	59, 488, 580, 620
Hpy8I	GTNNAC	6 cut(s)	118, 193, 238, 429, 599, 684
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	307, 732
HpyCH4III	ACNGT	4 cut(s)	21, 603, 641, 673
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	54, 394, 610, 708, 883
HpyF3I	CTNAG	7 cut(s)	41, 57, 213, 531, 664, 687, 813
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	334, 349, 382, 436, 629
HspAI	GCGC	2 cut(s)	24, 74
KflI	GGGWCCC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	150, 589, 895
LmnI	GCTCC	2 cut(s)	131, 698
LweI	GCATC	2 cut(s)	233, 859
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	227, 667
MalI	GATC	3 cut(s)	152, 591, 897
MbiI	CCGCTC	1 cut(s)	678
MboI	GATC	3 cut(s)	150, 589, 895
MboII	GAAGA	4 cut(s)	194, 350, 399, 402
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	748
MmeI	TCCRAC	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	403
MslI	CAYNNNNRTG	2 cut(s)	329, 689
MspA1I	CMGCKG	2 cut(s)	391, 880
MspI	CCGG	5 cut(s)	89, 233, 459, 471, 660
MspR9I	CCNGG	5 cut(s)	233, 290, 472, 660, 900
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	290, 900
MvnI	CGCG	1 cut(s)	74
NciI	CCSGG	3 cut(s)	233, 472, 660
NdeII	GATC	3 cut(s)	150, 589, 895
NlaIII	CATG	5 cut(s)	334, 349, 382, 436, 629
NlaIV	GGNNCC	4 cut(s)	133, 336, 927, 928
NmuCI	GTSAC	2 cut(s)	227, 667
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	2 cut(s)	382, 629
PctI	GAATGC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	484, 633, 766
PflFI	GACNNNGTC	1 cut(s)	233
PpuMI	RGGWCCY	2 cut(s)	335, 926
Psp124BI	GAGCTC	1 cut(s)	165
Psp5II	RGGWCCY	2 cut(s)	335, 926
Psp6I	CCWGG	2 cut(s)	288, 898
PspGI	CCWGG	2 cut(s)	288, 898
PspN4I	GGNNCC	4 cut(s)	133, 336, 927, 928
PspPI	GGNCC	6 cut(s)	91, 217, 250, 335, 461, 926
PspPPI	RGGWCCY	2 cut(s)	335, 926
PstI	CTGCAG	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	233
PvuII	CAGCTG	2 cut(s)	391, 880
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	329, 689
SacI	GAGCTC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	150, 589, 895
Sau96I	GGNCC	6 cut(s)	91, 217, 250, 335, 461, 926
ScrFI	CCNGG	5 cut(s)	233, 290, 472, 660, 900
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	2 cut(s)	233, 859
SfcI	CTRYAG	1 cut(s)	881
SinI	GGWCC	3 cut(s)	91, 335, 926
SmiMI	CAYNNNNRTG	2 cut(s)	329, 689
SmlI	CTYRAG	3 cut(s)	278, 339, 840
SmoI	CTYRAG	3 cut(s)	278, 339, 840
Sse9I	AATT	1 cut(s)	748
SsiI	CCGC	8 cut(s)	220, 494, 542, 545, 554, 678, 773, 912
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	5 cut(s)	231, 288, 470, 658, 898
TaaI	ACNGT	4 cut(s)	21, 603, 641, 673
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	487
TasI	AATT	1 cut(s)	748
TauI	GCSGC	5 cut(s)	496, 545, 548, 557, 775
TfiI	GAWTC	3 cut(s)	484, 633, 766
TscAI	CASTG	3 cut(s)	646, 672, 708
TseFI	GTSAC	2 cut(s)	227, 667
Tsp45I	GTSAC	2 cut(s)	227, 667
TspGWI	ACGGA	2 cut(s)	215, 255
TspRI	CASTG	3 cut(s)	646, 672, 708
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	3 cut(s)	91, 335, 926
XceI	RCATGY	2 cut(s)	382, 629
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.