RLG00000017356

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008830
Physical Location & Seq
Reverse (-)
15616148 .. 15618455
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017356

Sequence Viewer

Length: 996 bp
ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAATTTCTCAGGCGCAAGTGCACCCAGGAGTGCGTGTTTGCGCCGTACTTCCCGCCGGACCAGCCGCAGAAATTTGCCAACGTTCACAAGGTGTTTGGGGCCAGCAATGTTGCCAAGATTCTTAACGAGCTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCTCTGGCCTACGAGGCCGAGGCTCGTCTCCGCGACCCGGTCTACGGCTGCGTGGGGCTCATTTCTATTCTTCAGCAGAGATTGAAGCAAGTCCAGCTCGATCTATACAATGCCAGAAAGGAGCTGGCTACTTACATGGGCCCGCAGGCCATGCTCTCGATTCTTCAGCCGACATCGTACATGCCGCAGCAGATTCAGGGGGGGAATGCCTCCTCTTCCTCGGTGGTTGTGCCGTACAACATGTCTCCGATGATGGGTATTCCGACCGGGGCAGCCTCCGGCAGCGGTGGGCAGTTAATGGTGAGAGAACAACAGCAACAGCAGCAGATTTTCGAGGCTCAGCAATTGCTGGCAGCGAGAGAGCAGCAGGAGATGATGAGAAGCTTTGAGCAGAACAAACAGGGAGCATTGCAGGGTCAAGAACCGCCGCATCATCTGAGGTTTAACAGTGGGTTCGACTCGGTCACTGGGACTGGGTTGACTCAGATGAGTCCTACTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCTAATAATGCTAATATCTCACCTGCTTTGGCTCTGGGCTTTGATCCTAACCCTTATCAGATTCAGCCACAACAGCAGCAACAAGAACCTCACCACCACCACCACCATCTCCAGCTTCAGGCTTTGCTTCAATCCCAACAACAACCGCAGCAGCAGCAGTCGCAGCAACAACAAACACCGCAGCTGCTGCCGCAGAAGGTCGAAGGCGAGGATGGCAGAACTAGGACTTCATTCTGGTTTATATCTTCGCCCCCTGCATACGACTGGACAGAGTAA

Protein Analysis

332

Amino Acids

36.58

Weight (kDa)

6.5

Isoelectric Point (pI)

78.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 103 1.9e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 751
Acc16I TGCGCA 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 751
AccI GTMKAC 1 cut(s) 237
AccII CGCG 3 cut(s) 180, 188, 228
AclI AACGTT 1 cut(s) 114
AclWI GGATC 1 cut(s) 758
AcsI RAATTY 3 cut(s) 13, 35, 104
AcuI CTGAAG 4 cut(s) 251, 344, 678, 821
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 3 cut(s) 80, 374, 431
AfiI CCNNNNNNNGG 4 cut(s) 232, 239, 449, 838
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 2 cut(s) 280, 851
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 7 cut(s) 163, 292, 319, 579, 722, 835, 904
AluI AGCT 7 cut(s) 163, 292, 319, 579, 722, 835, 904
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 227, 444
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 1 cut(s) 758
AlwNI CAGNNNCTG 1 cut(s) 907
AoxI GGCC 5 cut(s) 132, 201, 210, 334, 342
ApaI GGGCCC 1 cut(s) 338
ApaLI GTGCAC 1 cut(s) 52
ApoI RAATTY 3 cut(s) 13, 35, 104
AspLEI GCGC 5 cut(s) 26, 48, 76, 170, 180
AspS9I GGNCC 4 cut(s) 91, 132, 334, 335
AsuC2I CCSGG 2 cut(s) 233, 463
AsuHPI GGTGA 4 cut(s) 202, 508, 732, 803
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 2 cut(s) 56, 338
BanII GRGCYC 2 cut(s) 255, 338
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 3 cut(s) 442, 834, 926
BceAI ACGGC 3 cut(s) 61, 256, 412
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 2 cut(s) 233, 463
BcoDI GTCTC 2 cut(s) 227, 444
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 751
BglI GCCNNNNNGGC 1 cut(s) 209
BlpI GCTNAGC 2 cut(s) 164, 534
Bme1390I CCNGG 3 cut(s) 59, 233, 463
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 4 cut(s) 91, 132, 334, 335
BmiI GGNNCC 2 cut(s) 133, 336
BmrFI CCNGG 3 cut(s) 59, 233, 463
BmrI ACTGGG 2 cut(s) 672, 678
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 2 cut(s) 672, 678
BpmI CTGGAG 1 cut(s) 815
Bpu1102I GCTNAGC 2 cut(s) 164, 534
BpuMI CCSGG 2 cut(s) 233, 463
BsaJI CCNNGG 4 cut(s) 57, 213, 414, 462
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 239, 449, 838
Bse1I ACTGG 3 cut(s) 667, 673, 989
Bse3DI GCAATG 2 cut(s) 145, 602
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 4 cut(s) 57, 213, 414, 462
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 4 cut(s) 232, 239, 449, 838
BseMI GCAATG 2 cut(s) 145, 602
BseMII CTCAG 5 cut(s) 55, 155, 548, 623, 692
BseNI ACTGG 3 cut(s) 667, 673, 989
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 2 cut(s) 56, 338
Bsh1236I CGCG 3 cut(s) 180, 188, 228
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 5 cut(s) 134, 203, 212, 336, 344
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 4 cut(s) 89, 233, 462, 474
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 4 cut(s) 232, 239, 449, 838
BsmAI GTCTC 2 cut(s) 227, 444
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 679
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 5 cut(s) 134, 203, 212, 336, 344
Bsp120I GGGCCC 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 56, 255, 338
Bsp143I GATC 2 cut(s) 295, 763
Bsp1720I GCTNAGC 2 cut(s) 164, 534
BspANI GGCC 5 cut(s) 134, 203, 212, 336, 344
BspCNI CTCAG 5 cut(s) 54, 156, 547, 624, 691
BspFNI CGCG 3 cut(s) 180, 188, 228
BspLI GGNNCC 2 cut(s) 133, 336
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 145, 602
BsrI ACTGG 3 cut(s) 667, 673, 989
BssECI CCNNGG 4 cut(s) 57, 213, 414, 462
BssMI GATC 2 cut(s) 295, 763
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 415
BstAPI GCANNNNNTGC 2 cut(s) 346, 907
BstC8I GCNNGC 6 cut(s) 31, 136, 321, 338, 342, 546
BstDEI CTNAG 5 cut(s) 41, 164, 534, 632, 678
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 3 cut(s) 180, 188, 228
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 5 cut(s) 26, 48, 76, 170, 180
BstKTI GATC 2 cut(s) 298, 766
BstMAI GTCTC 2 cut(s) 227, 444
BstMBI GATC 2 cut(s) 295, 763
BstMCI CGRYCG 1 cut(s) 462
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 2 cut(s) 379, 439
BstSCI CCNGG 3 cut(s) 57, 231, 461
BstSLI GKGCMC 2 cut(s) 56, 338
BstUI CGCG 3 cut(s) 180, 188, 228
BsuRI GGCC 5 cut(s) 134, 203, 212, 336, 344
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 2 cut(s) 649, 660
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 6 cut(s) 31, 136, 321, 338, 342, 546
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 5 cut(s) 26, 48, 76, 170, 180
Cfr13I GGNCC 4 cut(s) 91, 132, 334, 335
CseI GACGC 1 cut(s) 194
Csp6I GTAC 3 cut(s) 79, 373, 430
CviAII CATG 4 cut(s) 331, 346, 376, 436
CviQI GTAC 3 cut(s) 79, 373, 430
DdeI CTNAG 5 cut(s) 41, 164, 534, 632, 678
DpnI GATC 2 cut(s) 297, 765
DpnII GATC 2 cut(s) 295, 763
DraIII CACNNNGTG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco24I GRGCYC 2 cut(s) 255, 338
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 4 cut(s) 251, 344, 678, 821
EcoRII CCWGG 1 cut(s) 57
EcoT38I GRGCYC 2 cut(s) 255, 338
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 4 cut(s) 334, 349, 379, 439
FaiI YATR 7 cut(s) 301, 332, 347, 377, 437, 962, 979
FaqI GGGAC 1 cut(s) 679
FatI CATG 4 cut(s) 330, 345, 375, 435
FauI CCCGC 2 cut(s) 93, 345
FblI GTMKAC 1 cut(s) 237
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 2 cut(s) 255, 338
FspBI CTAG 1 cut(s) 942
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 5 cut(s) 25, 47, 75, 169, 179
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 5 cut(s) 134, 203, 212, 336, 344
HapII CCGG 4 cut(s) 89, 233, 462, 474
HgaI GACGC 1 cut(s) 194
HhaI GCGC 5 cut(s) 26, 48, 76, 170, 180
Hin1II CATG 4 cut(s) 334, 349, 379, 439
Hin6I GCGC 5 cut(s) 24, 46, 74, 168, 178
HinP1I GCGC 5 cut(s) 24, 46, 74, 168, 178
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 7 cut(s) 151, 355, 388, 653, 676, 685, 781
HpaII CCGG 4 cut(s) 89, 233, 462, 474
HphI GGTGA 4 cut(s) 202, 508, 732, 803
Hpy166II GTNNAC 5 cut(s) 54, 118, 193, 238, 675
Hpy188I TCNGA 5 cut(s) 444, 459, 633, 681, 780
Hpy188III TCNNGA 2 cut(s) 352, 614
Hpy8I GTNNAC 5 cut(s) 54, 118, 193, 238, 675
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 910, 917
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 33, 54, 607, 977
HpyF3I CTNAG 5 cut(s) 41, 164, 534, 632, 678
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 4 cut(s) 334, 349, 379, 439
HspAI GCGC 5 cut(s) 24, 46, 74, 168, 178
Kzo9I GATC 2 cut(s) 295, 763
LmnI GCTCC 2 cut(s) 316, 599
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 942
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 658
MalI GATC 2 cut(s) 297, 765
MboI GATC 2 cut(s) 295, 763
MboII GAAGA 4 cut(s) 257, 350, 402, 957
MfeI CAATTG 1 cut(s) 539
MhlI GDGCHC 3 cut(s) 56, 255, 338
MluCI AATT 4 cut(s) 13, 35, 104, 539
MlyI GAGTC 3 cut(s) 647, 670, 694
MmeI TCCRAC 1 cut(s) 482
MseI TTAA 3 cut(s) 156, 491, 639
MspA1I CMGCKG 2 cut(s) 480, 904
MspI CCGG 4 cut(s) 89, 233, 462, 474
MspR9I CCNGG 3 cut(s) 59, 233, 463
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 3 cut(s) 180, 188, 228
NciI CCSGG 2 cut(s) 233, 463
NdeII GATC 2 cut(s) 295, 763
NlaIII CATG 4 cut(s) 334, 349, 379, 439
NlaIV GGNNCC 2 cut(s) 133, 336
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 658
NsbI TGCGCA 1 cut(s) 25
NspI RCATGY 2 cut(s) 379, 439
PaqCI CACCTGC 1 cut(s) 751
PciI ACATGT 1 cut(s) 435
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 151, 355, 388, 781
PflFI GACNNNGTC 2 cut(s) 233, 656
PleI GAGTC 3 cut(s) 647, 670, 693
PpsI GAGTC 3 cut(s) 647, 670, 693
PscI ACATGT 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 133, 336
PspOMI GGGCCC 1 cut(s) 334
PspPI GGNCC 4 cut(s) 91, 132, 334, 335
PstNI CAGNNNCTG 1 cut(s) 907
PsyI GACNNNGTC 2 cut(s) 233, 656
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 3 cut(s) 80, 374, 431
RsaNI GTAC 3 cut(s) 79, 373, 430
SaqAI TTAA 3 cut(s) 156, 491, 639
Sau3AI GATC 2 cut(s) 295, 763
Sau96I GGNCC 4 cut(s) 91, 132, 334, 335
SchI GAGTC 3 cut(s) 647, 670, 694
ScrFI CCNGG 3 cut(s) 59, 233, 463
SduI GDGCHC 3 cut(s) 56, 255, 338
SfaNI GCATC 1 cut(s) 634
SfiI GGCCNNNNNGGCC 1 cut(s) 209
SinI GGWCC 1 cut(s) 91
Sse9I AATT 4 cut(s) 13, 35, 104, 539
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 3 cut(s) 57, 231, 461
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 1 cut(s) 117
TaqI TCGA 5 cut(s) 294, 353, 528, 651, 921
TaqII GACCGA 1 cut(s) 646
TasI AATT 4 cut(s) 13, 35, 104, 539
TauI GCSGC 4 cut(s) 100, 382, 625, 913
TfiI GAWTC 4 cut(s) 151, 355, 388, 781
Tru1I TTAA 3 cut(s) 156, 491, 639
Tru9I TTAA 3 cut(s) 156, 491, 639
TscAI CASTG 2 cut(s) 649, 667
TseFI GTSAC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 939
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 2 cut(s) 649, 667
Tth111I GACNNNGTC 2 cut(s) 233, 656
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 3 cut(s) 13, 35, 104
XceI RCATGY 2 cut(s) 379, 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.