Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7961052.1

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Forward (+)

27 .. 503

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7961052.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtcgtcgtcaaattctccgtgcgcagcctgcaaatttctcaggcgcaagtgcacccaggagtgcgtgtttgcgccgtacttcccgccggaccagccgcagaaatttgccaacgttcacaaggtgtttggggccagcaatgttgccaagattctaaacgagctgagcgccacgcagcgcgaggacgcggtgaactcgctggcctacgaggccgaggctcgtctccgcgaccccgtctacggctgcgtggggctcatttctattcttcagcagagattgaagcaagtccagctcgatctatataatgccagaaaggagctggctacttacatgggcccgcaggccatgctctcgattcttcagccgacatcttacatgccgcagcagattcagggcggcgggaatgcctcctcttcctcggtggttgtgccatacaacatgtcgccgatgatgggcattccgaccggagcagcctca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

159

Amino Acids

17.3

Weight (kDa)

8.85

Isoelectric Point (pI)

67.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	180, 188, 228
AciI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 399
AclI	AACGTT	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	13, 35, 104
AcuI	CTGAAG	2 cut(s)	251, 344
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	239, 452
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	163, 292, 319
AluI	AGCT	3 cut(s)	163, 292, 319
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	52
AoxI	GGCC	5 cut(s)	132, 201, 210, 334, 342
ApaI	GGGCCC	1 cut(s)	338
ApaLI	GTGCAC	1 cut(s)	52
ApeKI	GCWGC	5 cut(s)	26, 175, 243, 382, 470
ApoI	RAATTY	3 cut(s)	13, 35, 104
AspLEI	GCGC	5 cut(s)	26, 48, 76, 170, 180
AspS9I	GGNCC	4 cut(s)	91, 132, 334, 335
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	2 cut(s)	56, 338
BanII	GRGCYC	2 cut(s)	255, 338
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	38, 187, 230, 394
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	2 cut(s)	61, 256
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	8 cut(s)	27, 98, 176, 244, 380, 383, 397, 471
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	8 cut(s)	28, 99, 177, 245, 381, 384, 398, 472
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	91, 132, 334, 335
BmiI	GGNNCC	2 cut(s)	133, 336
BmrFI	CCNGG	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	57, 213, 417
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 452
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 213, 417
BseLI	CCNNNNNNNGG	2 cut(s)	239, 452
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	55, 155
BseRI	GAGGAG	1 cut(s)	400
BseSI	GKGCMC	2 cut(s)	56, 338
BseXI	GCAGC	4 cut(s)	38, 187, 230, 394
Bsh1236I	CGCG	3 cut(s)	180, 188, 228
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	5 cut(s)	134, 203, 212, 336, 344
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	89, 465
BslI	CCNNNNNNNGG	2 cut(s)	239, 452
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	2 cut(s)	409, 456
BsnI	GGCC	5 cut(s)	134, 203, 212, 336, 344
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	56, 255, 338
Bsp143I	GATC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 399
BspANI	GGCC	5 cut(s)	134, 203, 212, 336, 344
BspCNI	CTCAG	2 cut(s)	54, 156
BspFNI	CGCG	3 cut(s)	180, 188, 228
BspLI	GGNNCC	2 cut(s)	133, 336
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	57, 213, 417
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	418
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	6 cut(s)	31, 136, 201, 321, 338, 342
BstDEI	CTNAG	2 cut(s)	41, 164
BstFNI	CGCG	3 cut(s)	180, 188, 228
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	5 cut(s)	26, 48, 76, 170, 180
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	295
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 94, 209, 289, 346
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	379, 442
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	56, 338
BstUI	CGCG	3 cut(s)	180, 188, 228
BstV1I	GCAGC	4 cut(s)	38, 187, 230, 394
BsuRI	GGCC	5 cut(s)	134, 203, 212, 336, 344
Cac8I	GCNNGC	6 cut(s)	31, 136, 201, 321, 338, 342
CfoI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Cfr13I	GGNCC	4 cut(s)	91, 132, 334, 335
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	331, 346, 376, 439
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	41, 164
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco24I	GRGCYC	2 cut(s)	255, 338
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	251, 344
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	255, 338
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	334, 349, 379, 442
FaiI	YATR	7 cut(s)	301, 303, 332, 347, 377, 433, 440
FatI	CATG	4 cut(s)	330, 345, 375, 438
FauI	CCCGC	3 cut(s)	93, 345, 392
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	27, 98, 176, 244, 380, 383, 397, 471
FriOI	GRGCYC	2 cut(s)	255, 338
Fsp4HI	GCNGC	8 cut(s)	27, 98, 176, 244, 380, 383, 397, 471
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	5 cut(s)	25, 47, 75, 169, 179
GluI	GCNGC	8 cut(s)	27, 98, 176, 244, 380, 383, 397, 471
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	5 cut(s)	134, 203, 212, 336, 344
HapII	CCGG	2 cut(s)	89, 465
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Hin1II	CATG	4 cut(s)	334, 349, 379, 442
Hin6I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HinP1I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HinfI	GANTC	3 cut(s)	151, 355, 388
HpaII	CCGG	2 cut(s)	89, 465
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	4 cut(s)	54, 118, 193, 238
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	4 cut(s)	54, 118, 193, 238
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	33, 54
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 94, 209, 289, 346
HpyF3I	CTNAG	2 cut(s)	41, 164
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	334, 349, 379, 442
HspAI	GCGC	5 cut(s)	24, 46, 74, 168, 178
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	2 cut(s)	316, 467
Lsp1109I	GCAGC	4 cut(s)	38, 187, 230, 394
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	257, 350, 405
MhlI	GDGCHC	3 cut(s)	56, 255, 338
MluCI	AATT	3 cut(s)	13, 35, 104
MnlI	CCTC	6 cut(s)	175, 202, 208, 418, 421, 427
MspI	CCGG	2 cut(s)	89, 465
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	2 cut(s)	409, 456
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	180, 188, 228
MwoI	GCNNNNNNNGC	5 cut(s)	30, 94, 209, 289, 346
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	334, 349, 379, 442
NlaIV	GGNNCC	2 cut(s)	133, 336
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	2 cut(s)	379, 442
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	2 cut(s)	409, 456
PfeI	GAWTC	3 cut(s)	151, 355, 388
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	8 cut(s)	28, 99, 177, 245, 381, 384, 398, 472
PscI	ACATGT	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	133, 336
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	4 cut(s)	91, 132, 334, 335
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	8 cut(s)	27, 98, 176, 244, 380, 383, 397, 471
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	4 cut(s)	91, 132, 334, 335
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	3 cut(s)	56, 255, 338
SetI	ASST	5 cut(s)	117, 126, 165, 294, 321
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	13, 35, 104
SsiI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 399
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	294, 353
TasI	AATT	3 cut(s)	13, 35, 104
TauI	GCSGC	3 cut(s)	100, 382, 399
TfiI	GAWTC	3 cut(s)	151, 355, 388
TseI	GCWGC	5 cut(s)	26, 175, 243, 382, 470
TspGWI	ACGGA	1 cut(s)	9
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	13, 35, 104
XceI	RCATGY	2 cut(s)	379, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.