Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Forward (+)

76979560 .. 76983333

Gene Structure 3774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAATTTCTCAGGCGCAAGTGCACCCAGGAGTGCGTGTTTGCACCTTACTTCCCGCCGGACCAGCCGCAGAAATTTGCCAACGTTCACAAGGTGTTTGGGGCCAGCAACGTTGCCAAGATTCTTAACGAGCTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCTCTGGCCTACGAGGCCGAGGCTCGTCTCCGCGACCCAGTCTACGGCTGCGTGGGGCTCATTTCTATTCTTCAGCAGAGATTGAAGCAAGTCCAGCTCGATCTATACAACGCCAGAAAGGAGCTGGCTACTTACATGGGCCCGCAGGCCATGCTCTCGATTCTTCAGCCGACATCTTACATGCCGCAGCAGATTCAGGGCGGGAATGCCTCCTCTTCCTCGGTGGTTGTGCCGTACAACATGTCGCCGATGATGGGTATTCAGACCGGAGCAGCCTCCGGCAGCGGTGGGCAGTTAATGGTGAGAGAACAACAGCAACAGCAGCAGATTTTCGAGGCTCAACAATTGTTGGCAGCGAGGAGCAGCAGGAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

190

Amino Acids

20.89

Weight (kDa)

9.11

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 103	5.4e-42	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	180, 188, 228
AciI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 480
AclI	AACGTT	2 cut(s)	114, 141
AcsI	RAATTY	3 cut(s)	13, 35, 104
AcuI	CTGAAG	2 cut(s)	251, 344
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	239, 449
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	163, 292, 319
AluI	AGCT	3 cut(s)	163, 292, 319
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	52
AoxI	GGCC	5 cut(s)	132, 201, 210, 334, 342
ApaI	GGGCCC	1 cut(s)	338
ApaLI	GTGCAC	1 cut(s)	52
ApeKI	GCWGC	9 cut(s)	26, 175, 243, 382, 467, 477, 517, 548, 558
ApoI	RAATTY	3 cut(s)	13, 35, 104
AspLEI	GCGC	4 cut(s)	26, 48, 170, 180
AspS9I	GGNCC	4 cut(s)	91, 132, 334, 335
AsuHPI	GGTGA	2 cut(s)	202, 508
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	2 cut(s)	56, 338
BanII	GRGCYC	2 cut(s)	255, 338
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	8 cut(s)	38, 187, 230, 394, 479, 489, 529, 560
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	2 cut(s)	256, 412
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	91, 132, 334, 335
BmiI	GGNNCC	2 cut(s)	133, 336
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	57, 213, 414
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 449
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 213, 414
BseLI	CCNNNNNNNGG	2 cut(s)	239, 449
BseMII	CTCAG	2 cut(s)	55, 155
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	397, 568
BseSI	GKGCMC	2 cut(s)	56, 338
BseXI	GCAGC	8 cut(s)	38, 187, 230, 394, 479, 489, 529, 560
Bsh1236I	CGCG	3 cut(s)	180, 188, 228
BshFI	GGCC	5 cut(s)	134, 203, 212, 336, 344
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	89, 462, 474
BslI	CCNNNNNNNGG	2 cut(s)	239, 449
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	5 cut(s)	134, 203, 212, 336, 344
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	3 cut(s)	56, 255, 338
Bsp143I	GATC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 480
BspANI	GGCC	5 cut(s)	134, 203, 212, 336, 344
BspCNI	CTCAG	2 cut(s)	54, 156
BspFNI	CGCG	3 cut(s)	180, 188, 228
BspLI	GGNNCC	2 cut(s)	133, 336
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	57, 213, 414
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstC8I	GCNNGC	5 cut(s)	31, 136, 321, 338, 342
BstDEI	CTNAG	2 cut(s)	41, 164
BstFNI	CGCG	3 cut(s)	180, 188, 228
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	4 cut(s)	26, 48, 170, 180
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 94, 209, 289, 346, 517
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	379, 439
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	56, 338
BstUI	CGCG	3 cut(s)	180, 188, 228
BstV1I	GCAGC	8 cut(s)	38, 187, 230, 394, 479, 489, 529, 560
BsuRI	GGCC	5 cut(s)	134, 203, 212, 336, 344
Cac8I	GCNNGC	5 cut(s)	31, 136, 321, 338, 342
CfoI	GCGC	4 cut(s)	26, 48, 170, 180
Cfr13I	GGNCC	4 cut(s)	91, 132, 334, 335
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	331, 346, 376, 436
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	41, 164
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco24I	GRGCYC	2 cut(s)	255, 338
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	251, 344
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	255, 338
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	334, 349, 379, 439
FaiI	YATR	5 cut(s)	301, 332, 347, 377, 437
FatI	CATG	4 cut(s)	330, 345, 375, 435
FauI	CCCGC	3 cut(s)	93, 345, 389
FblI	GTMKAC	1 cut(s)	237
FriOI	GRGCYC	2 cut(s)	255, 338
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	4 cut(s)	25, 47, 169, 179
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	5 cut(s)	134, 203, 212, 336, 344
HapII	CCGG	3 cut(s)	89, 462, 474
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	4 cut(s)	26, 48, 170, 180
Hin1II	CATG	4 cut(s)	334, 349, 379, 439
Hin6I	GCGC	4 cut(s)	24, 46, 168, 178
HinP1I	GCGC	4 cut(s)	24, 46, 168, 178
HinfI	GANTC	3 cut(s)	151, 355, 388
HpaII	CCGG	3 cut(s)	89, 462, 474
HphI	GGTGA	2 cut(s)	202, 508
Hpy166II	GTNNAC	4 cut(s)	54, 118, 193, 238
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	4 cut(s)	54, 118, 193, 238
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	114, 141
HpyCH4V	TGCA	3 cut(s)	33, 54, 74
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 94, 209, 289, 346, 517
HpyF3I	CTNAG	2 cut(s)	41, 164
HpySE526I	ACGT	2 cut(s)	114, 141
Hsp92II	CATG	4 cut(s)	334, 349, 379, 439
HspAI	GCGC	4 cut(s)	24, 46, 168, 178
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	3 cut(s)	316, 464, 555
Lsp1109I	GCAGC	8 cut(s)	38, 187, 230, 394, 479, 489, 529, 560
MaeII	ACGT	2 cut(s)	114, 141
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	3 cut(s)	257, 350, 402
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	3 cut(s)	56, 255, 338
MluCI	AATT	4 cut(s)	13, 35, 104, 539
MnlI	CCTC	9 cut(s)	175, 202, 208, 415, 418, 424, 481, 523, 546
MseI	TTAA	2 cut(s)	156, 491
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	3 cut(s)	89, 462, 474
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	180, 188, 228
MwoI	GCNNNNNNNGC	6 cut(s)	30, 94, 209, 289, 346, 517
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	334, 349, 379, 439
NlaIV	GGNNCC	2 cut(s)	133, 336
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	2 cut(s)	379, 439
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	151, 355, 388
PflFI	GACNNNGTC	1 cut(s)	233
PscI	ACATGT	1 cut(s)	435
Psp1406I	AACGTT	2 cut(s)	114, 141
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	133, 336
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	4 cut(s)	91, 132, 334, 335
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	156, 491
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	4 cut(s)	91, 132, 334, 335
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	3 cut(s)	56, 255, 338
SetI	ASST	7 cut(s)	79, 117, 126, 144, 165, 294, 321
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	4 cut(s)	13, 35, 104, 539
SsiI	CCGC	8 cut(s)	86, 98, 188, 226, 338, 380, 396, 480
StyD4I	CCNGG	1 cut(s)	57
TaiI	ACGT	2 cut(s)	117, 144
TaqI	TCGA	3 cut(s)	294, 353, 528
TasI	AATT	4 cut(s)	13, 35, 104, 539
TauI	GCSGC	2 cut(s)	100, 382
TfiI	GAWTC	3 cut(s)	151, 355, 388
Tru1I	TTAA	2 cut(s)	156, 491
Tru9I	TTAA	2 cut(s)	156, 491
TseI	GCWGC	9 cut(s)	26, 175, 243, 382, 467, 477, 517, 548, 558
TspGWI	ACGGA	1 cut(s)	9
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	13, 35, 104
XceI	RCATGY	2 cut(s)	379, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.