Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Reverse (-)

15760286 .. 15761233

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG178900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAATTTCTCAGGCGCAAGTGCACCCAGGAGTGCGTGTTTGCGCCGTACTTCCCGCCGGACCAGCCGCAGAAATTTGCCAACGTTCACAAGGTGTTTGGGGCCAGCAATGTTGCCAAGATTCTAAACGAGCTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCGCTGGCCTACGAGGCCGAGGCTCGTCTCCGCGACCCAGTCTACGGCTGCGTCGGGCTCATTTCTATTCTTCAGCAGAGATTGAAGCAAGTCCAGCTCGATCTATACAATGCCAGAAAGGAGCTGGCTACCTACATGGGCCCGCAGGCCATGCTCTCGATTCTTCAGCCGACATCTTACATGCCGCAGCAGATTCAGGGCGGCGGGAATGCCTCCTCTTCCTCGGTGGTTGTGCCATACAACATGTCGCCGATGATGGGCATTCCGACGGGAGCAGCCTCCGGCAGCGGTGGGCAGTTAATGGTGAGAGAACAACAGCAACAGCAGCAGATTTTCGAGGCTCAGCAATTGCTGGCAGCGAGGGAGCAGCAGGAGATGTTGAGAAGCTTTGAGCAGAACAAACAGGGAGCATTGCAAAGTCAAGAACCGCCGCATCATCTGAGGTTTAACAGTGGGTTCGACTCGGTCACTGGGACTGGGTTGACTCAGATGAGTCCTACTTCAGCAGCAGCTAATAATGCTAACATCTCACCTGCTTTGGCTCTGGGCTTTGATCTTAACCCTTATCAGATTCAGCCACAACAGCAACAACAAGAACCTCACCACCACCACCATCTCCAGCTTCAGGCTTTGCTTCAATCCCAACAACAACCGCAGCAGCAGCAATCGCAGCAACAACAACCACCGCAGCTGCTGCCGCAGAAGGTCGAAGGCGAGGATGGCAGAAGTAGGAGTGTGGGCCCATCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

315

Amino Acids

34.69

Weight (kDa)

7.08

Isoelectric Point (pI)

87.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 103	1.7e-41	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc16I	TGCGCA	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	180, 188, 228
AclI	AACGTT	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	13, 35, 104
AcuI	CTGAAG	4 cut(s)	251, 344, 681, 803
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	239, 452, 820
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	280, 833
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	7 cut(s)	163, 292, 319, 582, 707, 817, 886
AluI	AGCT	7 cut(s)	163, 292, 319, 582, 707, 817, 886
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	889
AoxI	GGCC	6 cut(s)	132, 201, 210, 334, 342, 934
ApaI	GGGCCC	2 cut(s)	338, 938
ApaLI	GTGCAC	1 cut(s)	52
ApoI	RAATTY	3 cut(s)	13, 35, 104
AspLEI	GCGC	5 cut(s)	26, 48, 76, 170, 180
AspS9I	GGNCC	6 cut(s)	91, 132, 334, 335, 934, 935
AsuHPI	GGTGA	4 cut(s)	202, 511, 717, 788
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	3 cut(s)	56, 338, 938
BanII	GRGCYC	3 cut(s)	255, 338, 938
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	4 cut(s)	445, 816, 908, 946
BceAI	ACGGC	2 cut(s)	61, 256
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	736
BglI	GCCNNNNNGGC	1 cut(s)	209
BlpI	GCTNAGC	2 cut(s)	164, 537
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	6 cut(s)	91, 132, 334, 335, 934, 935
BmiI	GGNNCC	3 cut(s)	133, 336, 936
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	3 cut(s)	227, 675, 681
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	3 cut(s)	227, 675, 681
BpmI	CTGGAG	1 cut(s)	797
Bpu1102I	GCTNAGC	2 cut(s)	164, 537
BsaJI	CCNNGG	3 cut(s)	57, 213, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 452, 820
Bse1I	ACTGG	3 cut(s)	233, 670, 676
Bse3DI	GCAATG	2 cut(s)	145, 605
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 213, 417
BseGI	GGATG	1 cut(s)	919
BseLI	CCNNNNNNNGG	3 cut(s)	239, 452, 820
BseMI	GCAATG	2 cut(s)	145, 605
BseMII	CTCAG	5 cut(s)	55, 155, 551, 626, 695
BseNI	ACTGG	3 cut(s)	233, 670, 676
BseRI	GAGGAG	1 cut(s)	400
BseSI	GKGCMC	3 cut(s)	56, 338, 938
Bsh1236I	CGCG	3 cut(s)	180, 188, 228
BshFI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 936
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	89, 477
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	3 cut(s)	239, 452, 820
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	409, 456
BsnI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 936
Bsp120I	GGGCCC	2 cut(s)	334, 934
Bsp1286I	GDGCHC	4 cut(s)	56, 255, 338, 938
Bsp143I	GATC	2 cut(s)	295, 748
Bsp1720I	GCTNAGC	2 cut(s)	164, 537
BspANI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 936
BspCNI	CTCAG	5 cut(s)	54, 156, 550, 627, 694
BspFNI	CGCG	3 cut(s)	180, 188, 228
BspLI	GGNNCC	3 cut(s)	133, 336, 936
BspMI	ACCTGC	1 cut(s)	736
BsrDI	GCAATG	2 cut(s)	145, 605
BsrI	ACTGG	3 cut(s)	233, 670, 676
BssECI	CCNNGG	3 cut(s)	57, 213, 417
BssMI	GATC	2 cut(s)	295, 748
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	418
BstAPI	GCANNNNNTGC	2 cut(s)	346, 889
BstC8I	GCNNGC	7 cut(s)	31, 136, 201, 321, 338, 342, 549
BstDEI	CTNAG	5 cut(s)	41, 164, 537, 635, 681
BstF5I	GGATG	1 cut(s)	919
BstFNI	CGCG	3 cut(s)	180, 188, 228
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	5 cut(s)	26, 48, 76, 170, 180
BstKTI	GATC	2 cut(s)	298, 751
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	295, 748
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	379, 442
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	3 cut(s)	56, 338, 938
BstUI	CGCG	3 cut(s)	180, 188, 228
BsuRI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 936
BtsCI	GGATG	1 cut(s)	919
BtsIMutI	CAGTG	2 cut(s)	652, 663
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	7 cut(s)	31, 136, 201, 321, 338, 342, 549
CaiI	CAGNNNCTG	1 cut(s)	889
CfoI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Cfr13I	GGNCC	6 cut(s)	91, 132, 334, 335, 934, 935
CseI	GACGC	2 cut(s)	194, 235
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	331, 346, 376, 439
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	5 cut(s)	41, 164, 537, 635, 681
DpnI	GATC	2 cut(s)	297, 750
DpnII	GATC	2 cut(s)	295, 748
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco24I	GRGCYC	3 cut(s)	255, 338, 938
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	251, 344, 681, 803
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	3 cut(s)	255, 338, 938
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	334, 349, 379, 442
FaiI	YATR	6 cut(s)	301, 332, 347, 377, 433, 440
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	4 cut(s)	330, 345, 375, 438
FauI	CCCGC	3 cut(s)	93, 345, 392
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	1 cut(s)	926
FriOI	GRGCYC	3 cut(s)	255, 338, 938
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	5 cut(s)	25, 47, 75, 169, 179
GsuI	CTGGAG	1 cut(s)	797
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	6 cut(s)	134, 203, 212, 336, 344, 936
HapII	CCGG	2 cut(s)	89, 477
HgaI	GACGC	2 cut(s)	194, 235
HhaI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Hin1II	CATG	4 cut(s)	334, 349, 379, 442
Hin6I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HinP1I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	7 cut(s)	151, 355, 388, 656, 679, 688, 766
HpaII	CCGG	2 cut(s)	89, 477
HphI	GGTGA	4 cut(s)	202, 511, 717, 788
Hpy166II	GTNNAC	5 cut(s)	54, 118, 193, 238, 678
Hpy188I	TCNGA	4 cut(s)	462, 636, 684, 765
Hpy188III	TCNNGA	2 cut(s)	352, 617
Hpy8I	GTNNAC	5 cut(s)	54, 118, 193, 238, 678
Hpy99I	CGWCG	3 cut(s)	10, 251, 466
HpyAV	CCTTC	2 cut(s)	892, 899
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	33, 54, 610
HpyF3I	CTNAG	5 cut(s)	41, 164, 537, 635, 681
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	334, 349, 379, 442
HspAI	GCGC	5 cut(s)	24, 46, 74, 168, 178
Kzo9I	GATC	2 cut(s)	295, 748
LmnI	GCTCC	4 cut(s)	316, 467, 559, 602
LweI	GCATC	1 cut(s)	637
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	2 cut(s)	297, 750
MboI	GATC	2 cut(s)	295, 748
MboII	GAAGA	3 cut(s)	257, 350, 405
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	4 cut(s)	56, 255, 338, 938
MluCI	AATT	4 cut(s)	13, 35, 104, 542
MlyI	GAGTC	3 cut(s)	650, 673, 697
MmeI	TCCRAC	1 cut(s)	485
MseI	TTAA	3 cut(s)	494, 642, 753
MspA1I	CMGCKG	2 cut(s)	483, 886
MspI	CCGG	2 cut(s)	89, 477
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	542
Mva1269I	GAATGC	2 cut(s)	409, 456
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	180, 188, 228
NdeII	GATC	2 cut(s)	295, 748
NlaIII	CATG	4 cut(s)	334, 349, 379, 442
NlaIV	GGNNCC	3 cut(s)	133, 336, 936
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	661
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	2 cut(s)	379, 442
PaqCI	CACCTGC	1 cut(s)	736
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	2 cut(s)	409, 456
PfeI	GAWTC	4 cut(s)	151, 355, 388, 766
PflFI	GACNNNGTC	2 cut(s)	233, 659
PleI	GAGTC	3 cut(s)	650, 673, 696
PpsI	GAGTC	3 cut(s)	650, 673, 696
PscI	ACATGT	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	133, 336, 936
PspOMI	GGGCCC	2 cut(s)	334, 934
PspPI	GGNCC	6 cut(s)	91, 132, 334, 335, 934, 935
PstNI	CAGNNNCTG	1 cut(s)	889
PsyI	GACNNNGTC	2 cut(s)	233, 659
PvuII	CAGCTG	1 cut(s)	886
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	494, 642, 753
Sau3AI	GATC	2 cut(s)	295, 748
Sau96I	GGNCC	6 cut(s)	91, 132, 334, 335, 934, 935
SchI	GAGTC	3 cut(s)	650, 673, 697
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	4 cut(s)	56, 255, 338, 938
SfaNI	GCATC	1 cut(s)	637
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	4 cut(s)	13, 35, 104, 542
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	5 cut(s)	294, 353, 531, 654, 903
TaqII	GACCGA	1 cut(s)	649
TasI	AATT	4 cut(s)	13, 35, 104, 542
TauI	GCSGC	5 cut(s)	100, 382, 399, 628, 895
TfiI	GAWTC	4 cut(s)	151, 355, 388, 766
Tru1I	TTAA	3 cut(s)	494, 642, 753
Tru9I	TTAA	3 cut(s)	494, 642, 753
TscAI	CASTG	2 cut(s)	652, 670
TseFI	GTSAC	1 cut(s)	661
Tsp45I	GTSAC	1 cut(s)	661
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	652, 670
Tth111I	GACNNNGTC	2 cut(s)	233, 659
VneI	GTGCAC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	13, 35, 104
XceI	RCATGY	2 cut(s)	379, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.