Rorug02G0122600

LOB domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
10540780 .. 10546511
5732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0122600.1

Sequence Viewer

Length: 3642 bp
ATGGGAGCTCTAATTCTGAGGAAGGTGTTTGATAAAGTTTCTAGCTTTGTTACTTTTCCATGGAGAAGAAGCAGTACTAACAGTGCTGCTACTAGCCCAGAAGGCCAGGGGAGAAGAATCTTTCACAGAGATGTTGAAAGAGACCAGTTTCAGTATGCAAATGCTCATTGTCTTTCATCATATTACAGTGTCTTTGTGGCTCGCCTTGCTATCATGGTTATGCTGGCTATTCTAATTGGACTGTTAACTATACTGACATGGCATTTCACAAGAATATACACAGCAAAATCACTGAGCAACTTAGCTTATGGGCTTCGTTACGAGCTTCTGCAACGCCCCGTTTTGCGGATGTGGAACATCTTGAATTCAACGGCAGAGATAACAACAGCACAGGTGAAGCTTTCGGAGTATGTCATCAGAAAGTATAGCAACCCTTCTACTCAAGCAGAACAAGTTGAGCTCTATGAATCGATGAGGGCTATGACATGGGCAATGTTTGCAAGTCGAAAAGCTCTGAGTGCAATTACTATCAATTACAGAAATGGTTTTGTCCAGGCATTCCATAGAGATCACAGGAGTAACAACTCGTTTTACATTTACTCTGATCTTGCAAACTATTCAATCACTTCCACCGGGGCTTATGATGCTGATTTGTTCTCAACACGTGAGGCGTGGAATGATCAGTCCATACATGGCAACACTTCTGCAAAGTGGTTCCGCGAACCACTTGATCCTGTCACTGGTGAGAAGATAGGTAAAGCAATCCAAATTCAGCCAGATGATCTGATCAACATAGCAGGCCTTTCACAAGTACCAGATGGTGTGGCAACTTGGCACGTGGCGGTCAGCAAGTACTCGGATTCACCATTGCTTTCAGCAGCACTGCCAGTTTCGGATCCTTCCAATAAAAGCATAGTGGCTGTGGTGGGTGTTACCACAGCACTGTATAGTGTTGGACAGCTGATGAAAGAACTTGTTGAGTTTCACAGTGGACATATTTATTTGACGTCTCAAGAAGGTTACTTACTTTCTACTTCCACGAATGCTCCTCTTTTGACAAATACTACAAAAGGGCCGAAGCTTATGATGGCTACGGATTCGGAGGATCACATAATACGAATGGGAGCTGAGTGGTTACAAAGAGCATATGGCAACAAGTTTCCTCCTAAAGATAAGGAGGTTCATGTTGAAAATGCCAGGCTGGGAGATGAGGAATATTACATCGACTCGTTTTTTCTGAAGCTAAAGAGACTTCCTCTGGTAGGGGTTATCATCATTCCAAGAAAATATATAATGGGGAAGGTGGATGAGAGAGCCTTCAAAACGTTGGTGATCTTGATATCTGCATCATTTTGTATCCTAGTCACTGGATGTGTCTGCATTTTCATACTGACAAATGGAGTATCAAAGGAAATGAAACTAAGAGCAGAGCTGATAAGTCATCTTGATGCGAGGAGACGGGCAGAGGCATCTAGCAATTATAAAAGCCAATTTCTAGCAAACATGAGTCATGAATTAAGGACACCGATGGCTGCGGTTATTGGGTTACTTGACATTCTAATTAGCGATGACTGCCTTACAAATGAACAGTACTCCACAGTCACTCAAATTAGAAAATGCTCAACAGCTCTACTTCGGCTTCTTAACAATATACTGGATCTGAGCAAGGTTGAATCTGGAAAACTGGTGCTGGAAGAAGCTGAGTTTGATTTGGGAAGAGAACTTGAAGGGCTATTTGATATGTTCTCTGTGCAGTGCATCAACCACAATGTAGAGACTGTTTTAGATCTTTCTGATGATATGCCAAGACTAGTTCGAGGAGACTCTGCAAGAGTTGTTCAAATATTTGCTAATCTAATTAGCAATTCCATCAAGTTCACTACATCTGGTCACATAATACTCAGAGGATCGTGTGAGAACTTGAACTCTTCTGGTGATACCAGGAGAATCAGTCCCGATCAGAAAAGTTTATGGTCTTCACATAAGGCAAAGTTGAAGCAAGGGAACTATGCAAAGAAGGCTCACAAGAAAGACAACAAAATGATTCTTTGGTTTGAAGTAGATGACACTGGTTGTGGAATTGATGCTAGTAAATGGGAGTCTGTCTTTGAAAGCTTTGAGCAAGCTGATCCCTCAACAACTCGAACGCATGGTGGCACTGGTCTTGGGCTATGCATTGTGCGGACATTGGTTAACAAGATGGGTGGAGAAATTAAGGTTGTAAAGAAGGATGGGCCAGGAACTTTAATGCAGTTGTACTTGGTTCTGAATACACCTGCAGATGGCACAGAGCAATATTGTCAAGTAGATTTTGCAAAGCACGGTGTGGTGGTGGTGCTTGCACTACATGGCAGCATGGGTAGATTGATTATGTCCCAGTGGTTATGTAAAAATGGAGTTTTCACATTGGCAACATCCGAGTGGAATGAGCTGGCACAAATTCTTAGGGAACTCTTTAAAGACAGAAATTCAGCTCGTAATAACAGCCCTGAAGCACATCAGTCACTAAATGAATCTTTGAAAGCTGATATACGGAGTATACATGATAGAAGGAACCCAGTTTTTGTCATGGTTGTCGATATAGGAGTGCTTGACTTAAGCACAGATATATGGAAGGAACAGCTCAATTTTCTTGACAAATACTCTGGGAAAGCAACGTTTGCATGGATGCTGAATCATGATACCTCCAATGCCATAAAGATGGAGCTTCGCAGAAGAGGGAATGTATTGATGGTTAACAAACCTCTATACAAAGCAAAAATGGCTCACATTTTGGAAGCTGTCATAAAAGAGAGAAATCTTGAAACACATGAATGCCTTGAGATTGATTCTACTCACTTTGACGTTGGCTGCAGCTCTGATGAATCTGATAAAGGTGAAAAGAACAACTCCAGTTCCAAAAGTTCATTTCATATTGGAGAAAGACGAAGAGACAAGATTGTGAAAAATTGTTCTTCACAGTACCAGACTATTAACAGCTGCTTAGTCGAACTCACAGAGGTACTCCCAAAGGACAATAATTCAAGGAAAGAAGATGCAGAACCCAGATTAATGAGCACCAGTCAAGCATCCCATGATACACAACCTCAATGTGCAGATTCAAAACTTAAAGAACAACAATCGGTCACCAGGAGTCCTAAAGAGAACAGTAACGCATATACAAGGAAACCAGTGAATCAACCAAAGTCTCTTCAAGGCCTACGCATACTGCTCGCGGAAGACACACCAGTGCTGCAGAGAGTTGCAAGTATAATGCTAGAAAAGATGGGAGCTACAGTAATTGCTGTGGCCGATGGACTGCAGGCAGTAGATGCTTTGAGTTGTATGCTTAATGCAGAAAATTGTAGACAGGACGTGAAAGATGGACACGAAAATGAAACTTTGGTTCCCCGTCCATATGACTTGGTCCTAATGGATTGCCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATCAGGAAATCCGAAGAGGGAACCAGTTTACACATTCCGATAGTTGCTCTAACAGCTCATGCAATGTCATCAGATGAAGCGAAATGCTTGGAGGTGGGGATGGATGCTTATCTAACAAAGCCAATTGATTACAAGTTGATGGTGTCTACCATTCTCTCACTCACTAAAATAACAGAAGCCTGA

Protein Analysis

1213

Amino Acids

135.83

Weight (kDa)

7.35

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HisKA PF00512 495 - 560 1.7e-17 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 607 - 755 6.1e-18 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg PF00072 1069 - 1203 7.8e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
AarI CACCTGC 1 cut(s) 2284
AatII GACGTC 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 2284
AccI GTMKAC 3 cut(s) 2539, 3346, 3605
AccII CGCG 2 cut(s) 720, 3215
AciI CCGC 6 cut(s) 346, 718, 842, 1535, 2182, 3215
AclI AACGTT 2 cut(s) 1325, 2657
AclWI GGATC 7 cut(s) 725, 890, 903, 1113, 1665, 1915, 2123
AcoI YGGCCR 1 cut(s) 3288
AcsI RAATTY 4 cut(s) 364, 768, 2439, 2467
AcuI CTGAAG 2 cut(s) 1259, 2511
AcvI CACGTG 2 cut(s) 665, 838
AcyI GRCGYC 1 cut(s) 1007
AdeI CACNNNGTG 1 cut(s) 2326
AfaI GTAC 7 cut(s) 76, 813, 854, 1592, 2258, 2963, 3003
AfiI CCNNNNNNNGG 4 cut(s) 345, 740, 1262, 2282
AflII CTTAAG 1 cut(s) 2596
AflIII ACRYGT 1 cut(s) 662
AhlI ACTAGT 1 cut(s) 1810
AjiI CACGTC 1 cut(s) 3355
AjnI CCWGG 6 cut(s) 105, 552, 1196, 1940, 2236, 3128
AleI CACNNNNGTG 1 cut(s) 3227
Alw21I GWGCWC 3 cut(s) 10, 462, 3059
Alw26I GTCTC 8 cut(s) 135, 1014, 1243, 1450, 1769, 1815, 2925, 3192
AlwI GGATC 7 cut(s) 725, 890, 903, 1113, 1665, 1915, 2123
AoxI GGCC 6 cut(s) 103, 799, 1073, 2234, 3196, 3288
ApeKI GCWGC 8 cut(s) 86, 878, 1532, 2352, 2850, 2853, 2979, 3232
ApoI RAATTY 4 cut(s) 364, 768, 2439, 2467
AseI ATTAAT 1 cut(s) 3050
AspS9I GGNCC 3 cut(s) 1073, 2234, 3406
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 7 cut(s) 406, 755, 855, 1342, 1946, 2888, 3118
AvaII GGWCC 1 cut(s) 3406
BamHI GGATCC 1 cut(s) 895
BanII GRGCYC 2 cut(s) 10, 462
BarI GAAGNNNNNNTAC 4 cut(s) 58, 90, 1008, 1040
BbrPI CACGTG 2 cut(s) 665, 838
BbsI GAAGAC 2 cut(s) 1968, 3225
Bbv12I GWGCWC 3 cut(s) 10, 462, 3059
BbvI GCAGC 8 cut(s) 73, 890, 1519, 2364, 2837, 2865, 2966, 3219
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 3193, 3227
BciT130I CCWGG 6 cut(s) 107, 554, 1198, 1942, 2238, 3130
BciVI GTATCC 1 cut(s) 1367
BclI TGATCA 2 cut(s) 679, 786
BcnI CCSGG 1 cut(s) 634
BcoDI GTCTC 8 cut(s) 135, 1014, 1243, 1450, 1769, 1815, 2925, 3192
BcuI ACTAGT 1 cut(s) 1810
BfaI CTAG 8 cut(s) 42, 93, 1361, 1473, 1496, 1811, 2088, 3257
BfmI CTRYAG 5 cut(s) 2277, 2851, 3233, 3273, 3299
BfrI CTTAAG 1 cut(s) 2596
BfuAI ACCTGC 1 cut(s) 2284
BfuI GTATCC 1 cut(s) 1367
BglI GCCNNNNNGGC 1 cut(s) 102
BglII AGATCT 1 cut(s) 1786
BisI GCNGC 8 cut(s) 87, 879, 1533, 2353, 2851, 2854, 2980, 3233
BlsI GCNGC 8 cut(s) 88, 880, 1534, 2354, 2852, 2855, 2981, 3234
BmcAI AGTACT 3 cut(s) 76, 854, 1592
Bme1390I CCNGG 7 cut(s) 107, 554, 634, 1198, 1942, 2238, 3130
Bme18I GGWCC 1 cut(s) 3406
BmgBI CACGTC 1 cut(s) 3355
BmgT120I GGNCC 3 cut(s) 1073, 2234, 3406
BmiI GGNNCC 5 cut(s) 716, 897, 2555, 3387, 3481
BmrFI CCNGG 7 cut(s) 107, 554, 634, 1198, 1942, 2238, 3130
BmrI ACTGGG 2 cut(s) 2371, 2552
BmuI ACTGGG 2 cut(s) 2371, 2552
BpiI GAAGAC 2 cut(s) 1968, 3225
BplI GAGNNNNNCTC 2 cut(s) 1240, 1272
BpmI CTGGAG 1 cut(s) 2875
BpuEI CTTGAG 3 cut(s) 426, 996, 2840
BpuMI CCSGG 1 cut(s) 634
Bsa29I ATCGAT 1 cut(s) 470
BsaAI YACGTR 2 cut(s) 665, 838
BsaBI GATNNNNATC 1 cut(s) 3567
BsaHI GRCGYC 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 59, 106, 633
BsaXI ACNNNNNCTCC 6 cut(s) 1030, 1060, 1936, 1966, 3261, 3291
Bsc4I CCNNNNNNNGG 4 cut(s) 345, 740, 1262, 2282
Bse3DI GCAATG 3 cut(s) 498, 866, 3528
Bse8I GATNNNNATC 1 cut(s) 3567
BseBI CCWGG 6 cut(s) 107, 554, 1198, 1942, 2238, 3130
BseCI ATCGAT 1 cut(s) 470
BseDI CCNNGG 3 cut(s) 59, 106, 633
BseJI GATNNNNATC 1 cut(s) 3567
BseLI CCNNNNNNNGG 4 cut(s) 345, 740, 1262, 2282
BseMI GCAATG 3 cut(s) 498, 866, 3528
BseMII CTCAG 7 cut(s) 8, 284, 506, 1119, 1652, 1692, 1915
BseRI GAGGAG 3 cut(s) 1038, 1468, 1833
BseXI GCAGC 8 cut(s) 73, 890, 1519, 2364, 2837, 2865, 2966, 3219
BseYI CCCAGC 1 cut(s) 1201
BsgI GTGCAG 2 cut(s) 1772, 3114
Bsh1236I CGCG 2 cut(s) 720, 3215
BshFI GGCC 6 cut(s) 105, 801, 1075, 2236, 3198, 3290
BshVI ATCGAT 1 cut(s) 470
BsiHKAI GWGCWC 3 cut(s) 10, 462, 3059
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 1938, 2359
BslI CCNNNNNNNGG 4 cut(s) 345, 740, 1262, 2282
BsmAI GTCTC 8 cut(s) 135, 1014, 1243, 1450, 1769, 1815, 2925, 3192
BsmBI CGTCTC 2 cut(s) 1014, 1450
BsmFI GGGAC 2 cut(s) 1938, 2359
BsmI GAATGC 3 cut(s) 557, 1048, 2819
BsnI GGCC 6 cut(s) 105, 801, 1075, 2236, 3198, 3290
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 10, 462, 3059
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 6 cut(s) 346, 718, 842, 1535, 2182, 3215
BspANI GGCC 6 cut(s) 105, 801, 1075, 2236, 3198, 3290
BspCNI CTCAG 7 cut(s) 9, 285, 507, 1120, 1653, 1693, 1914
BspDI ATCGAT 1 cut(s) 470
BspFNI CGCG 2 cut(s) 720, 3215
BspHI TCATGA 2 cut(s) 1510, 2677
BspLI GGNNCC 5 cut(s) 716, 897, 2555, 3387, 3481
BspMAI CTGCAG 4 cut(s) 2281, 2855, 3237, 3303
BspMI ACCTGC 1 cut(s) 2284
BspPI GGATC 7 cut(s) 725, 890, 903, 1113, 1665, 1915, 2123
BspTI CTTAAG 1 cut(s) 2596
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 3 cut(s) 498, 866, 3528
BssECI CCNNGG 3 cut(s) 59, 106, 633
BssNAI GTATAC 1 cut(s) 2540
BssNI GRCGYC 1 cut(s) 1007
BssT1I CCWWGG 1 cut(s) 59
Bst1107I GTATAC 1 cut(s) 2540
Bst2UI CCWGG 6 cut(s) 107, 554, 1198, 1942, 2238, 3130
Bst6I CTCTTC 6 cut(s) 1711, 1933, 2710, 2923, 3195, 3468
BstACI GRCGYC 1 cut(s) 1007
BstAFI CTTAAG 1 cut(s) 2596
BstAPI GCANNNNNTGC 3 cut(s) 497, 2660, 3311
BstBAI YACGTR 2 cut(s) 665, 838
BstC8I GCNNGC 8 cut(s) 202, 225, 799, 2124, 2340, 2433, 3213, 3303
BstDSI CCRYGG 1 cut(s) 59
BstEII GGTNACC 1 cut(s) 3124
BstENI CCTNNNNNAGG 1 cut(s) 1260
BstFNI CGCG 2 cut(s) 720, 3215
BstMAI GTCTC 8 cut(s) 135, 1014, 1243, 1450, 1769, 1815, 2925, 3192
BstNI CCWGG 6 cut(s) 107, 554, 1198, 1942, 2238, 3130
BstPI GGTNACC 1 cut(s) 3124
BstSCI CCNGG 7 cut(s) 105, 552, 632, 1196, 1940, 2236, 3128
BstSFI CTRYAG 5 cut(s) 2277, 2851, 3233, 3273, 3299
BstUI CGCG 2 cut(s) 720, 3215
BstV1I GCAGC 8 cut(s) 73, 890, 1519, 2364, 2837, 2865, 2966, 3219
BstV2I GAAGAC 2 cut(s) 1968, 3225
BstX2I RGATCY 3 cut(s) 895, 1657, 1786
BstXI CCANNNNNNTGG 1 cut(s) 2701
BstYI RGATCY 3 cut(s) 895, 1657, 1786
BstZ17I GTATAC 1 cut(s) 2540
Bsu15I ATCGAT 1 cut(s) 470
BsuI GTATCC 1 cut(s) 1367
BsuRI GGCC 6 cut(s) 105, 801, 1075, 2236, 3198, 3290
BsuTUI ATCGAT 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 1581
BtrI CACGTC 1 cut(s) 3355
BtsI GCAGTG 2 cut(s) 881, 1760
BveI ACCTGC 1 cut(s) 2284
Cac8I GCNNGC 8 cut(s) 202, 225, 799, 2124, 2340, 2433, 3213, 3303
CciI TCATGA 2 cut(s) 1510, 2677
Cfr13I GGNCC 3 cut(s) 1073, 2234, 3406
ClaI ATCGAT 1 cut(s) 470
Csp6I GTAC 7 cut(s) 75, 812, 853, 1591, 2257, 2962, 3002
CspCI CAANNNNNGTGG 2 cut(s) 2185, 2220
CviQI GTAC 7 cut(s) 75, 812, 853, 1591, 2257, 2962, 3002
DraI TTTAAA 1 cut(s) 2458
DraIII CACNNNGTG 1 cut(s) 2326
EaeI YGGCCR 1 cut(s) 3288
Eam1104I CTCTTC 6 cut(s) 1711, 1933, 2710, 2923, 3195, 3468
EarI CTCTTC 6 cut(s) 1711, 1933, 2710, 2923, 3195, 3468
Ecl136II GAGCTC 2 cut(s) 8, 460
Eco130I CCWWGG 1 cut(s) 59
Eco147I AGGCCT 2 cut(s) 801, 3198
Eco24I GRGCYC 2 cut(s) 10, 462
Eco31I GGTCTC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 1341
Eco47I GGWCC 1 cut(s) 3406
Eco53kI GAGCTC 2 cut(s) 8, 460
Eco57I CTGAAG 2 cut(s) 1259, 2511
Eco72I CACGTG 2 cut(s) 665, 838
Eco91I GGTNACC 1 cut(s) 3124
EcoICRI GAGCTC 2 cut(s) 8, 460
EcoNI CCTNNNNNAGG 1 cut(s) 1260
EcoO65I GGTNACC 1 cut(s) 3124
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 6 cut(s) 105, 552, 1196, 1940, 2236, 3128
EcoRV GATATC 1 cut(s) 1341
EcoT14I CCWWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 2177
EcoT38I GRGCYC 2 cut(s) 10, 462
ErhI CCWWGG 1 cut(s) 59
Esp3I CGTCTC 2 cut(s) 1014, 1450
FaqI GGGAC 2 cut(s) 1938, 2359
FauNDI CATATG 2 cut(s) 1147, 3397
FbaI TGATCA 2 cut(s) 679, 786
FblI GTMKAC 3 cut(s) 2539, 3346, 3605
Fnu4HI GCNGC 8 cut(s) 87, 879, 1533, 2353, 2851, 2854, 2980, 3233
FriOI GRGCYC 2 cut(s) 10, 462
Fsp4HI GCNGC 8 cut(s) 87, 879, 1533, 2353, 2851, 2854, 2980, 3233
FspBI CTAG 8 cut(s) 42, 93, 1361, 1473, 1496, 1811, 2088, 3257
GluI GCNGC 8 cut(s) 87, 879, 1533, 2353, 2851, 2854, 2980, 3233
GsaI CCCAGC 1 cut(s) 1205
GsuI CTGGAG 1 cut(s) 2875
HaeIII GGCC 6 cut(s) 105, 801, 1075, 2236, 3198, 3290
HapII CCGG 1 cut(s) 633
Hin1I GRCGYC 1 cut(s) 1007
HincII GTYRAC 3 cut(s) 246, 2194, 2737
HindII GTYRAC 3 cut(s) 246, 2194, 2737
HindIII AAGCTT 3 cut(s) 398, 1079, 2113
HpaI GTTAAC 3 cut(s) 246, 2194, 2737
HpaII CCGG 1 cut(s) 633
HphI GGTGA 7 cut(s) 406, 755, 855, 1342, 1946, 2888, 3118
Hpy166II GTNNAC 9 cut(s) 246, 992, 1878, 2194, 2540, 2737, 3347, 3488, 3606
Hpy8I GTNNAC 9 cut(s) 246, 992, 1878, 2194, 2540, 2737, 3347, 3488, 3606
HpyCH4IV ACGT 7 cut(s) 664, 837, 1007, 1325, 2657, 2844, 3354
HpySE526I ACGT 7 cut(s) 664, 837, 1007, 1325, 2657, 2844, 3354
Hsp92I GRCGYC 1 cut(s) 1007
Ksp22I TGATCA 2 cut(s) 679, 786
KspAI GTTAAC 3 cut(s) 246, 2194, 2737
LmnI GCTCC 5 cut(s) 5, 1051, 1124, 2704, 3269
Lsp1109I GCAGC 8 cut(s) 73, 890, 1519, 2364, 2837, 2865, 2966, 3219
MaeI CTAG 8 cut(s) 42, 93, 1361, 1473, 1496, 1811, 2088, 3257
MaeII ACGT 7 cut(s) 664, 837, 1007, 1325, 2657, 2844, 3354
MfeI CAATTG 1 cut(s) 3582
MflI RGATCY 3 cut(s) 895, 1657, 1786
MhlI GDGCHC 3 cut(s) 10, 462, 3059
MlyI GAGTC 5 cut(s) 1220, 1516, 1817, 2108, 3142
MmeI TCCRAC 1 cut(s) 934
Mph1103I ATGCAT 1 cut(s) 2177
MslI CAYNNNNRTG 8 cut(s) 129, 218, 1446, 2419, 2699, 2812, 3227, 3372
MspA1I CMGCKG 2 cut(s) 961, 2979
MspCI CTTAAG 1 cut(s) 2596
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 7 cut(s) 107, 554, 634, 1198, 1942, 2238, 3130
MunI CAATTG 1 cut(s) 3582
Mva1269I GAATGC 3 cut(s) 557, 1048, 2819
MvaI CCWGG 6 cut(s) 107, 554, 1198, 1942, 2238, 3130
MvnI CGCG 2 cut(s) 720, 3215
NciI CCSGG 1 cut(s) 634
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 2 cut(s) 1147, 3397
NlaIV GGNNCC 5 cut(s) 716, 897, 2555, 3387, 3481
NmuCI GTSAC 6 cut(s) 736, 1363, 1600, 1889, 2502, 3124
NsiI ATGCAT 1 cut(s) 2177
OliI CACNNNNGTG 1 cut(s) 3227
PagI TCATGA 2 cut(s) 1510, 2677
PaqCI CACCTGC 1 cut(s) 2284
PceI AGGCCT 2 cut(s) 801, 3198
PctI GAATGC 3 cut(s) 557, 1048, 2819
PflFI GACNNNGTC 1 cut(s) 3404
PkrI GCNGC 8 cut(s) 88, 880, 1534, 2354, 2852, 2855, 2981, 3234
PleI GAGTC 5 cut(s) 1220, 1515, 1817, 2107, 3141
PmaCI CACGTG 2 cut(s) 665, 838
PmlI CACGTG 2 cut(s) 665, 838
PpsI GAGTC 5 cut(s) 1220, 1515, 1817, 2107, 3141
Ppu21I YACGTR 2 cut(s) 665, 838
PshBI ATTAAT 1 cut(s) 3050
PsiI TTATAA 1 cut(s) 1482
Psp124BI GAGCTC 2 cut(s) 10, 462
Psp1406I AACGTT 2 cut(s) 1325, 2657
Psp6I CCWGG 6 cut(s) 105, 552, 1196, 1940, 2236, 3128
PspCI CACGTG 2 cut(s) 665, 838
PspEI GGTNACC 1 cut(s) 3124
PspFI CCCAGC 1 cut(s) 1201
PspGI CCWGG 6 cut(s) 105, 552, 1196, 1940, 2236, 3128
PspN4I GGNNCC 5 cut(s) 716, 897, 2555, 3387, 3481
PspPI GGNCC 3 cut(s) 1073, 2234, 3406
PstI CTGCAG 4 cut(s) 2281, 2855, 3237, 3303
PsuI RGATCY 3 cut(s) 895, 1657, 1786
PsyI GACNNNGTC 1 cut(s) 3404
PvuII CAGCTG 2 cut(s) 961, 2979
RsaI GTAC 7 cut(s) 76, 813, 854, 1592, 2258, 2963, 3003
RsaNI GTAC 7 cut(s) 75, 812, 853, 1591, 2257, 2962, 3002
RseI CAYNNNNRTG 8 cut(s) 129, 218, 1446, 2419, 2699, 2812, 3227, 3372
SacI GAGCTC 2 cut(s) 10, 462
SatI GCNGC 8 cut(s) 87, 879, 1533, 2353, 2851, 2854, 2980, 3233
Sau96I GGNCC 3 cut(s) 1073, 2234, 3406
ScaI AGTACT 3 cut(s) 76, 854, 1592
SchI GAGTC 5 cut(s) 1220, 1516, 1817, 2108, 3142
ScrFI CCNGG 7 cut(s) 107, 554, 634, 1198, 1942, 2238, 3130
SduI GDGCHC 3 cut(s) 10, 462, 3059
SfcI CTRYAG 5 cut(s) 2277, 2851, 3233, 3273, 3299
SinI GGWCC 1 cut(s) 3406
SmiMI CAYNNNNRTG 8 cut(s) 129, 218, 1446, 2419, 2699, 2812, 3227, 3372
SmlI CTYRAG 4 cut(s) 441, 1011, 2596, 2819
SmoI CTYRAG 4 cut(s) 441, 1011, 2596, 2819
SpeI ACTAGT 1 cut(s) 1810
SseBI AGGCCT 2 cut(s) 801, 3198
SsiI CCGC 6 cut(s) 346, 718, 842, 1535, 2182, 3215
SspI AATATT 3 cut(s) 1217, 1845, 2297
SspMI CTAG 8 cut(s) 42, 93, 1361, 1473, 1496, 1811, 2088, 3257
SstI GAGCTC 2 cut(s) 10, 462
StuI AGGCCT 2 cut(s) 801, 3198
StyD4I CCNGG 7 cut(s) 105, 552, 632, 1196, 1940, 2236, 3128
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 7 cut(s) 667, 840, 1010, 1328, 2660, 2847, 3357
TaqI TCGA 7 cut(s) 470, 505, 1224, 1816, 2143, 2577, 2988
TaqII GACCGA 1 cut(s) 3112
TatI WGTACW 4 cut(s) 74, 852, 1590, 2256
TseFI GTSAC 6 cut(s) 736, 1363, 1600, 1889, 2502, 3124
TseI GCWGC 8 cut(s) 86, 878, 1532, 2352, 2850, 2853, 2979, 3232
Tsp45I GTSAC 6 cut(s) 736, 1363, 1600, 1889, 2502, 3124
TspGWI ACGGA 2 cut(s) 1109, 2548
Tth111I GACNNNGTC 1 cut(s) 3404
Vha464I CTTAAG 1 cut(s) 2596
VpaK11BI GGWCC 1 cut(s) 3406
VspI ATTAAT 1 cut(s) 3050
XagI CCTNNNNNAGG 1 cut(s) 1260
XapI RAATTY 4 cut(s) 364, 768, 2439, 2467
XmiI GTMKAC 3 cut(s) 2539, 3346, 3605
XspI CTAG 8 cut(s) 42, 93, 1361, 1473, 1496, 1811, 2088, 3257
ZraI GACGTC 1 cut(s) 1008
ZrmI AGTACT 3 cut(s) 76, 854, 1592
Zsp2I ATGCAT 1 cut(s) 2177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.