Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00331

Orthogroup ID

OG0008830

Physical Location & Seq

Genomic Coordinates Reverse (-)

90809 .. 93294

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGTCGTCAAATTCTCCGTGCGCAGCCTGCAAATTTCTCAGGCGCAAGTGCACCCAGGAGTGCGTGTTTGCGCCGTACTTCCCGCCGGACCAGCCGCAGAAATTTGCCAACGTTCACAAGGTGTTTGGGGCCAGCAATGTTGCCAAGATTCTAAACGAGCTGAGCGCCACGCAGCGCGAGGACGCGGTGAACTCGCTGGCCTACGAGGCCGAGGCTCGTCTCCGCGACCCCGTCTATGGCTGCGTGGGGCTCATTTCTATTCTTCAGCAGAGATTGAAGCAAGTCCAGCTCGATCTATACAATGCCAGAAAGGAGCTGGCTACTTACATGGGCCCGCAGGCCATGCTCTCGATTCTTCAGCCGACATCTTACATGCCGCAGCAGATTCAGGGTGGCGGGAATGCCTCCTCTTCCTCCGTGGTTGTGCCATACAACATGTCGCCGATGATGGGCATTCCGACCGGAGCAGCCTCCGGCAGCGGTGGGCAGTTAATGGTGAGAGAACAACAGCAACAGCAGCAGATTTTCGAGGCTCAGCAATTGCTGGCAGCGAGGGAGCAGCAGGAGATGTTGAGAAGCTTTGAGCAGAACAAACAGGGAGCATTGCAAAGTCAAGAACCGCCGCATCATCTGAGGTTTAACAGTGGGTTCGACTCGGTCACTGGGACTGGGTTGACTCAGATGAGTCCTTCTTCAGCAGCTAATAATGCTAACATCTCACCTGCTTTGGCTCTGGGCTTTGATCTTAACCCTTATCAGATTCAGCCACAACAGCAACAACAAGAACCTCACCACCACCACCATCTCCAGCTTCAGGCTTTGCTTCAATCCCAACAACAACCGCAGCAGCAGCAGCAGCAGCAATCGCAGCAACAACAACCACCGCAGCTGCTGCCGCAGAAGGTCGAAGGCGAGGATGGCAGAAGTAGGAGTGTGGGCCCATCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

317

Amino Acids

34.99

Weight (kDa)

7.08

Isoelectric Point (pI)

89.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	7 - 103	1.7e-41	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008830)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15510 FvH4_1g15510
malus_domestica	MD02G1166900.v1.1 MD15G1279500.v1.1
prunus_persica	Prupe.7G137900_v2.0.a1 Prupe.7G137900_v2.0.a1
pyrus_communis	pycom02g13420 pycom15g24240
rosa_chinensis	RchiOBHm_Chr2g0104791
rosa_laevigata	RLG00000017356
rosa_multiflora	Rmu_co7961052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138780
rosa_rugosa	Rorug02G0122600 Rorug02G0122700 Rorug02G0122800 Rorug02G0122900
rosa_samantha	Rh2AG172700 Rh2BG180400 Rh2CG178000 Rh2DG178900
rosa_wichuraiana	Rw0G008660 Rw2G013500 Rw2G013580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	733
Acc16I	TGCGCA	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	733
AccII	CGCG	3 cut(s)	180, 188, 228
AclI	AACGTT	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	13, 35, 104
AcuI	CTGAAG	4 cut(s)	251, 344, 681, 800
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	239, 452, 817
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	280, 830
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	7 cut(s)	163, 292, 319, 582, 704, 814, 892
AluI	AGCT	7 cut(s)	163, 292, 319, 582, 704, 814, 892
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	895
AoxI	GGCC	6 cut(s)	132, 201, 210, 334, 342, 940
ApaI	GGGCCC	2 cut(s)	338, 944
ApaLI	GTGCAC	1 cut(s)	52
ApoI	RAATTY	3 cut(s)	13, 35, 104
AspLEI	GCGC	5 cut(s)	26, 48, 76, 170, 180
AspS9I	GGNCC	6 cut(s)	91, 132, 334, 335, 940, 941
AsuHPI	GGTGA	4 cut(s)	202, 511, 714, 785
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	3 cut(s)	56, 338, 944
BanII	GRGCYC	3 cut(s)	255, 338, 944
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	4 cut(s)	445, 813, 914, 952
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	209
BlpI	GCTNAGC	2 cut(s)	164, 537
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	6 cut(s)	91, 132, 334, 335, 940, 941
BmiI	GGNNCC	3 cut(s)	133, 336, 942
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	2 cut(s)	675, 681
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	2 cut(s)	675, 681
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	2 cut(s)	164, 537
BsaJI	CCNNGG	3 cut(s)	57, 213, 420
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 452, 817
Bse1I	ACTGG	2 cut(s)	670, 676
Bse3DI	GCAATG	2 cut(s)	145, 605
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 213, 420
BseGI	GGATG	1 cut(s)	925
BseLI	CCNNNNNNNGG	3 cut(s)	239, 452, 817
BseMI	GCAATG	2 cut(s)	145, 605
BseMII	CTCAG	5 cut(s)	55, 155, 551, 626, 695
BseNI	ACTGG	2 cut(s)	670, 676
BseRI	GAGGAG	1 cut(s)	400
BseSI	GKGCMC	3 cut(s)	56, 338, 944
Bsh1236I	CGCG	3 cut(s)	180, 188, 228
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 942
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	89, 465, 477
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	3 cut(s)	239, 452, 817
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	2 cut(s)	409, 456
BsnI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 942
Bsp120I	GGGCCC	2 cut(s)	334, 940
Bsp1286I	GDGCHC	4 cut(s)	56, 255, 338, 944
Bsp143I	GATC	2 cut(s)	295, 745
Bsp1720I	GCTNAGC	2 cut(s)	164, 537
BspANI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 942
BspCNI	CTCAG	5 cut(s)	54, 156, 550, 627, 694
BspFNI	CGCG	3 cut(s)	180, 188, 228
BspLI	GGNNCC	3 cut(s)	133, 336, 942
BspMI	ACCTGC	1 cut(s)	733
BsrDI	GCAATG	2 cut(s)	145, 605
BsrI	ACTGG	2 cut(s)	670, 676
BssECI	CCNNGG	3 cut(s)	57, 213, 420
BssMI	GATC	2 cut(s)	295, 745
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	418
BstAPI	GCANNNNNTGC	2 cut(s)	346, 895
BstC8I	GCNNGC	7 cut(s)	31, 136, 201, 321, 338, 342, 549
BstDEI	CTNAG	5 cut(s)	41, 164, 537, 635, 681
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	925
BstFNI	CGCG	3 cut(s)	180, 188, 228
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	5 cut(s)	26, 48, 76, 170, 180
BstKTI	GATC	2 cut(s)	298, 748
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	295, 745
BstMCI	CGRYCG	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	379, 442
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	3 cut(s)	56, 338, 944
BstUI	CGCG	3 cut(s)	180, 188, 228
BsuRI	GGCC	6 cut(s)	134, 203, 212, 336, 344, 942
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	925
BtsIMutI	CAGTG	2 cut(s)	652, 663
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	7 cut(s)	31, 136, 201, 321, 338, 342, 549
CaiI	CAGNNNCTG	1 cut(s)	895
CfoI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Cfr13I	GGNCC	6 cut(s)	91, 132, 334, 335, 940, 941
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	331, 346, 376, 439
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	5 cut(s)	41, 164, 537, 635, 681
DpnI	GATC	2 cut(s)	297, 747
DpnII	GATC	2 cut(s)	295, 745
DraIII	CACNNNGTG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco24I	GRGCYC	3 cut(s)	255, 338, 944
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	251, 344, 681, 800
EcoRII	CCWGG	1 cut(s)	57
EcoT38I	GRGCYC	3 cut(s)	255, 338, 944
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	334, 349, 379, 442
FaiI	YATR	7 cut(s)	240, 301, 332, 347, 377, 433, 440
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	4 cut(s)	330, 345, 375, 438
FauI	CCCGC	3 cut(s)	93, 345, 392
FokI	GGATG	1 cut(s)	932
FriOI	GRGCYC	3 cut(s)	255, 338, 944
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	5 cut(s)	25, 47, 75, 169, 179
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	6 cut(s)	134, 203, 212, 336, 344, 942
HapII	CCGG	3 cut(s)	89, 465, 477
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	5 cut(s)	26, 48, 76, 170, 180
Hin1II	CATG	4 cut(s)	334, 349, 379, 442
Hin6I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HinP1I	GCGC	5 cut(s)	24, 46, 74, 168, 178
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	7 cut(s)	151, 355, 388, 656, 679, 688, 763
HpaII	CCGG	3 cut(s)	89, 465, 477
HphI	GGTGA	4 cut(s)	202, 511, 714, 785
Hpy166II	GTNNAC	4 cut(s)	54, 118, 193, 678
Hpy188I	TCNGA	4 cut(s)	462, 636, 684, 762
Hpy188III	TCNNGA	2 cut(s)	352, 617
Hpy8I	GTNNAC	4 cut(s)	54, 118, 193, 678
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	702, 898, 905
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	3 cut(s)	33, 54, 610
HpyF3I	CTNAG	5 cut(s)	41, 164, 537, 635, 681
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	334, 349, 379, 442
HspAI	GCGC	5 cut(s)	24, 46, 74, 168, 178
Kzo9I	GATC	2 cut(s)	295, 745
LmnI	GCTCC	4 cut(s)	316, 467, 559, 602
LweI	GCATC	1 cut(s)	637
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	2 cut(s)	297, 747
MboI	GATC	2 cut(s)	295, 745
MboII	GAAGA	4 cut(s)	257, 350, 405, 687
MfeI	CAATTG	1 cut(s)	542
MhlI	GDGCHC	4 cut(s)	56, 255, 338, 944
MluCI	AATT	4 cut(s)	13, 35, 104, 542
MlyI	GAGTC	3 cut(s)	650, 673, 697
MmeI	TCCRAC	1 cut(s)	485
MseI	TTAA	3 cut(s)	494, 642, 750
MspA1I	CMGCKG	2 cut(s)	483, 892
MspI	CCGG	3 cut(s)	89, 465, 477
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	542
Mva1269I	GAATGC	2 cut(s)	409, 456
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	180, 188, 228
NdeII	GATC	2 cut(s)	295, 745
NlaIII	CATG	4 cut(s)	334, 349, 379, 442
NlaIV	GGNNCC	3 cut(s)	133, 336, 942
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	661
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	2 cut(s)	379, 442
PaqCI	CACCTGC	1 cut(s)	733
PciI	ACATGT	1 cut(s)	438
PctI	GAATGC	2 cut(s)	409, 456
PfeI	GAWTC	4 cut(s)	151, 355, 388, 763
PflFI	GACNNNGTC	2 cut(s)	233, 659
PleI	GAGTC	3 cut(s)	650, 673, 696
PpsI	GAGTC	3 cut(s)	650, 673, 696
PscI	ACATGT	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	133, 336, 942
PspOMI	GGGCCC	2 cut(s)	334, 940
PspPI	GGNCC	6 cut(s)	91, 132, 334, 335, 940, 941
PstNI	CAGNNNCTG	1 cut(s)	895
PsyI	GACNNNGTC	2 cut(s)	233, 659
PvuII	CAGCTG	1 cut(s)	892
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	494, 642, 750
Sau3AI	GATC	2 cut(s)	295, 745
Sau96I	GGNCC	6 cut(s)	91, 132, 334, 335, 940, 941
SchI	GAGTC	3 cut(s)	650, 673, 697
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	4 cut(s)	56, 255, 338, 944
SfaNI	GCATC	1 cut(s)	637
SfiI	GGCCNNNNNGGCC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	4 cut(s)	13, 35, 104, 542
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	5 cut(s)	294, 353, 531, 654, 909
TaqII	GACCGA	1 cut(s)	649
TasI	AATT	4 cut(s)	13, 35, 104, 542
TauI	GCSGC	4 cut(s)	100, 382, 628, 901
TfiI	GAWTC	4 cut(s)	151, 355, 388, 763
Tru1I	TTAA	3 cut(s)	494, 642, 750
Tru9I	TTAA	3 cut(s)	494, 642, 750
TscAI	CASTG	2 cut(s)	652, 670
TseFI	GTSAC	1 cut(s)	661
Tsp45I	GTSAC	1 cut(s)	661
TspGWI	ACGGA	2 cut(s)	9, 409
TspRI	CASTG	2 cut(s)	652, 670
Tth111I	GACNNNGTC	2 cut(s)	233, 659
VneI	GTGCAC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	13, 35, 104
XceI	RCATGY	2 cut(s)	379, 442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.