FvH4_1g16510

Translation machinery associated TMA7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006696
Physical Location & Seq
Reverse (-)
9515714 .. 9516371
658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16510.t1

Sequence Viewer

Length: 318 bp
ATGTCGTCCAAGCAAGGAGGAAAAGCAAAGCCATTGAAGCAACCCAAGGCGGTGAAGAAGGAGTACGACGAGGATGATTTGGCCAAGCTTCAGAAGAAGAAGGATGAGGAGAAGGCACTGAAGGAGCTCAAAGCCAAAGCCCAGCAGAAGGGGACCTTTGGAGATATGTATAAAATTTCAAAGCATATTGGATACAACTTCCTAAAAGCCAGTAGATGCAGCAAGACTCAGATCGGGTGCCGAGGTATGTTTGCAAGAGGCCGGAATATCAAGCACCCGGATGAAGAAACAAACGAAAAAATTGTGAAACTAAGGTGA

Protein Analysis

106

Amino Acids

12.0

Weight (kDa)

9.88

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMA7 PF09072 3 - 54 1.5e-17 Translation machinery associated TMA7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 74, 140
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 2 cut(s) 37, 180
AluBI AGCT 2 cut(s) 88, 127
AluI AGCT 2 cut(s) 88, 127
Alw21I GWGCWC 1 cut(s) 129
AoxI GGCC 2 cut(s) 81, 259
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 153
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 231
BciVI GTATCC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 278
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 154, 239
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 45, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 45, 241
BseGI GGATG 3 cut(s) 79, 109, 286
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 83, 261
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 262, 278
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 2 cut(s) 83, 261
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 83, 261
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 154, 239
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 45, 241
BssMI GATC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 228, 311
BstF5I GGATG 3 cut(s) 79, 109, 286
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 83, 261
BtsCI GGATG 3 cut(s) 79, 109, 286
BtsIMutI CAGTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 64
CviJI RGCY 8 cut(s) 31, 83, 88, 127, 134, 140, 209, 261
CviKI_1 RGCY 8 cut(s) 31, 83, 88, 127, 134, 140, 209, 261
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 228, 311
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 74, 140
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 4 cut(s) 167, 171, 186, 248
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 3 cut(s) 86, 116, 293
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 83, 261
HapII CCGG 2 cut(s) 262, 278
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 226
HpaII CCGG 2 cut(s) 262, 278
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 93, 231
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 52, 94, 106, 115, 142
HpyCH4V TGCA 2 cut(s) 219, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 228, 311
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 4 cut(s) 155, 223, 275, 291
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 206
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 4 cut(s) 67, 106, 109, 296
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 174, 300
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 5 cut(s) 11, 64, 100, 236, 251
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 262, 278
MspR9I CCNGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 278
NdeII GATC 1 cut(s) 231
NlaIV GGNNCC 2 cut(s) 154, 239
NmeAIII GCCGAG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 154, 239
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 129
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 90, 129, 158, 247, 317
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 174, 300
SsiI CCGC 1 cut(s) 50
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 45
TasI AATT 2 cut(s) 174, 300
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.