Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016473.1

Orthogroup ID

OG0006696

Physical Location & Seq

Genomic Coordinates Reverse (-)

53095 .. 53939

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016473.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

atgtcgtccaagcaaggtggaaaagcgaagccactgaagcaacccaaggcggcgaagaaggagtacgacgaggatgatttggccaagcttcagaagaagaaagatgaggaaaaggcactgaaggagctcaaagccaaggcccaacagaaggggacttttggaggagctggcctcaagaaaagtgccttaccatatgtaccggttgtgaccatttgcttctctgcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 map03060 map03070

Pfam Domains

Protein Families

TMA7

Protein Analysis

76

Amino Acids

8.21

Weight (kDa)

9.75

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15270 AT3G16040
fragaria_vesca	FvH4_1g16510
malus_domestica	MD17G1194100.v1.1
prunus_persica	Prupe.3G069900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0106421 RchiOBHm_Chr2g0138111
rosa_multiflora	Rmu_sc0004015.1_g000002 Rmu_sc0016473.1_g000008
rosa_roxburghii	Rroxscaffold_2G00106460 Rroxscaffold_2G00137200
rosa_rugosa	Rorug02G0349700 Rorug07G0162500
rosa_samantha	Rh2AG186500 Rh2AG396300 Rh2BG196700 Rh2BG410300 Rh2CG191500 Rh2CG382800 Rh2DG192600 Rh2DG418000 Rh5AG147200 Rh5AG389200
rosa_wichuraiana	Rw2G014530 Rw2G032360 Rw2G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	3 cut(s)	56, 74, 140
AfaI	GTAC	2 cut(s)	65, 198
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	199
AluBI	AGCT	3 cut(s)	88, 127, 167
AluI	AGCT	3 cut(s)	88, 127, 167
Alw21I	GWGCWC	1 cut(s)	129
AoxI	GGCC	3 cut(s)	81, 138, 169
AsiGI	ACCGGT	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	129
BarI	GAAGNNNNNNTAC	2 cut(s)	47, 79
Bbv12I	GWGCWC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	45, 135
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	45, 135
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	83, 140, 171
BshTI	ACCGGT	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	83, 140, 171
Bsp1286I	GDGCHC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	3 cut(s)	83, 140, 171
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	45, 135
BssT1I	CCWWGG	2 cut(s)	45, 135
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	83, 140, 171
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	32, 116
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	64, 197
CspAI	ACCGGT	1 cut(s)	199
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviJI	RGCY	8 cut(s)	31, 83, 88, 127, 134, 140, 167, 171
CviKI_1	RGCY	8 cut(s)	31, 83, 88, 127, 134, 140, 167, 171
CviQI	GTAC	2 cut(s)	64, 197
EaeI	YGGCCR	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	45, 135
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	56, 74, 140
EcoICRI	GAGCTC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	45, 135
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	45, 135
FaiI	YATR	2 cut(s)	193, 195
FaqI	GGGAC	1 cut(s)	166
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	83, 140, 171
HapII	CCGG	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	175, 228
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	52, 115, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	124, 164
LpnPI	CCDG	2 cut(s)	153, 213
MaeIII	GTNAC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	67, 106, 109
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	4 cut(s)	64, 100, 155, 182
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	65, 198
RsaNI	GTAC	2 cut(s)	64, 197
SacI	GAGCTC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	4 cut(s)	19, 90, 129, 169
SgeI	CNNG	9 cut(s)	22, 26, 58, 82, 97, 148, 180, 187, 212
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	45, 135
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	2 cut(s)	39, 123
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	2 cut(s)	39, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.