Rh2DG418000

Translation machinery associated TMA7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006696
Physical Location & Seq
Forward (+)
60681146 .. 60683257
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG418000.1

Sequence Viewer

Length: 159 bp
ATGTCGTCCAAGCAAGGTGGAAAGGCAAAGCCTTTGAAGCAGCCCAAGGCTGAGAAGAAGGAGTACGACGAGGATGATTTGGCCAAGCTTCAGAAGAAGAAGGATGAGGAAAAGGTGAGAGCTCAATTGTCACAATATCCTGGTTCCTTTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMA7

Protein Analysis

52

Amino Acids

5.95

Weight (kDa)

9.44

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMA7 PF09072 3 - 43 1.2e-12 Translation machinery associated TMA7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 88, 122
AluI AGCT 2 cut(s) 88, 122
Alw21I GWGCWC 1 cut(s) 124
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 127
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 141
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 79, 109
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 124
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 124
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 79, 109
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 2 cut(s) 79, 109
Csp6I GTAC 1 cut(s) 64
CspCI CAANNNNNGTGG 1 cut(s) 33
CviJI RGCY 6 cut(s) 31, 43, 50, 83, 88, 122
CviKI_1 RGCY 6 cut(s) 31, 43, 50, 83, 88, 122
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 86, 116
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 86
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 52, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 51
LpnPI CCDG 2 cut(s) 126, 153
Lsp1109I GCAGC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 129
MboII GAAGA 3 cut(s) 67, 106, 109
MfeI CAATTG 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 125
MluNI TGGCCA 1 cut(s) 83
MnlI CCTC 2 cut(s) 64, 100
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 124
SatI GCNGC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 19, 90, 117, 124
SgeI CNNG 7 cut(s) 22, 26, 58, 82, 97, 152, 153
Sse9I AATT 1 cut(s) 125
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 45
TasI AATT 1 cut(s) 125
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.