Rorug07G0162500

Translation machinery associated TMA7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006696
Physical Location & Seq
Forward (+)
13041487 .. 13042701
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0162500.1

Sequence Viewer

Length: 837 bp
ATGCGCTCGGCGTATACTCAATTCAAGTGGAAGTTGCACGATCACTACCAAAAATGTGGCACACCTGTTCAGGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGACAGAGGAGTGGCATTGGCTATGTGATAAACTCTACACCGATCCAAAATATATTGATAAATGCGAGAAGAATTCAACTAGCCGAAAGAGACAAAGGAGTACGCATCGTGGCGGAGCTATGCCTTTCATTCAACATGCTTTGAGGACAGCCAAGGAGGGCAATCCTTTGTCTTTCATAGACAATTGGGCAGCTATGTATCAAGATTCAAATAGCAATTGGGTTAGTGATGCTGCACGTGATAAATATGATCGACTGAAAAATAAGAGAGAAGAGCATAAGGAGAAACTAACCCTGGAGGCACCAGAGGGTACTCCACCAGAATCTGTACAAGTTACTGCGCGTGATGCGATTCCAATCATGGCTGAAGAGTGTGGAAGGAAGGGAAAAAGAGTTCGTGGTTTAGGGTCGTTTCCTCGCATGGAGCTTCCAACTGTTACGTCTTCAACAGCTGTGAGTTCTGAGATGAACGTAATGCAAGATAAAGTGAAGAAGCTTGAATCAACTGTGGACACTATGCGGTCACAAAATGCACAGCTAATGACAATGTTGAAGAAGTTCTTGATGAATAATAGCCAAGGCTGCTTTGCTGATACAGAAAACATTGACATGCATATCGTAGTACCCAACAGTGAAGAAGATGATGTCTTTGGAAGAGATGAAGACGGTGTCCAAAACAATGGAGATAATTCTGAAACAGAGGATTTGGAGGAAGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMA7

Protein Analysis

278

Amino Acids

31.81

Weight (kDa)

5.61

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 42 - 178 2.2e-13 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 14
AccII CGCG 1 cut(s) 457
AciI CCGC 2 cut(s) 228, 634
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 501
AcvI CACGTG 1 cut(s) 353
AfaI GTAC 4 cut(s) 217, 427, 444, 738
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 7 cut(s) 25, 192, 248, 324, 561, 614, 667
AjnI CCWGG 1 cut(s) 408
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 6 cut(s) 233, 308, 541, 566, 610, 652
AluI AGCT 6 cut(s) 233, 308, 541, 566, 610, 652
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 305, 347, 696
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 6, 457
AsuHPI GGTGA 1 cut(s) 119
BanI GGYRCC 1 cut(s) 415
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 2 cut(s) 549, 783
BbvI GCAGC 3 cut(s) 317, 334, 683
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 306, 348, 697
BlsI GCNGC 3 cut(s) 307, 349, 698
Bme1390I CCNGG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 3 cut(s) 229, 334, 451
BpiI GAAGAC 2 cut(s) 549, 783
BpmI CTGGAG 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 470
BsaJI CCNNGG 3 cut(s) 267, 408, 691
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 267, 408, 691
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 317, 334, 683
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 415
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 5 cut(s) 40, 97, 113, 157, 364
BspACI CCGC 2 cut(s) 228, 634
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 442
BssECI CCNNGG 3 cut(s) 267, 408, 691
BssMI GATC 5 cut(s) 40, 97, 113, 157, 364
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 267, 691
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 550, 622, 746, 782
Bst6I CTCTTC 3 cut(s) 381, 477, 763
BstAUI TGTACA 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 576
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 2 cut(s) 6, 457
BstKTI GATC 5 cut(s) 43, 100, 116, 160, 367
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 5 cut(s) 40, 97, 113, 157, 364
BstMWI GCNNNNNNNGC 2 cut(s) 461, 696
BstNI CCWGG 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 254, 727
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 317, 334, 683
BstV2I GAAGAC 2 cut(s) 549, 783
BstXI CCANNNNNNTGG 2 cut(s) 56, 794
BstZ17I GTATAC 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 751
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 2 cut(s) 6, 457
Csp6I GTAC 4 cut(s) 216, 426, 443, 737
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 4 cut(s) 251, 475, 535, 724
CviQI GTAC 4 cut(s) 216, 426, 443, 737
DdeI CTNAG 1 cut(s) 576
DpnI GATC 5 cut(s) 42, 99, 115, 159, 366
DpnII GATC 5 cut(s) 40, 97, 113, 157, 364
Eam1104I CTCTTC 3 cut(s) 381, 477, 763
EarI CTCTTC 3 cut(s) 381, 477, 763
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 267, 691
Eco57I CTGAAG 1 cut(s) 501
Eco72I CACGTG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 2 cut(s) 267, 691
EcoT22I ATGCAT 1 cut(s) 729
ErhI CCWWGG 2 cut(s) 267, 691
FaeI CATG 4 cut(s) 254, 478, 538, 727
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 87
FatI CATG 4 cut(s) 250, 474, 534, 723
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 306, 348, 697
Fsp4HI GCNGC 3 cut(s) 306, 348, 697
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 5, 456
GluI GCNGC 3 cut(s) 306, 348, 697
GsuI CTGGAG 1 cut(s) 431
HhaI GCGC 2 cut(s) 6, 457
Hin1II CATG 4 cut(s) 254, 478, 538, 727
Hin6I GCGC 2 cut(s) 4, 455
HinP1I GCGC 2 cut(s) 4, 455
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 4 cut(s) 320, 437, 466, 614
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 15, 625
Hpy188I TCNGA 2 cut(s) 577, 808
Hpy188III TCNNGA 2 cut(s) 317, 676
Hpy8I GTNNAC 2 cut(s) 15, 625
HpyAV CCTTC 2 cut(s) 486, 490
HpyCH4III ACNGT 4 cut(s) 550, 622, 746, 782
HpyCH4IV ACGT 3 cut(s) 352, 554, 585
HpyCH4V TGCA 5 cut(s) 37, 350, 592, 647, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 696
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 3 cut(s) 352, 554, 585
Hsp92II CATG 4 cut(s) 254, 478, 538, 727
HspAI GCGC 2 cut(s) 4, 455
Kzo9I GATC 5 cut(s) 40, 97, 113, 157, 364
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 230, 538
LpnPI CCDG 7 cut(s) 56, 78, 108, 395, 422, 432, 447
Lsp1109I GCAGC 3 cut(s) 317, 334, 683
LweI GCATC 3 cut(s) 229, 334, 451
MaeI CTAG 1 cut(s) 195
MaeII ACGT 3 cut(s) 352, 554, 585
MaeIII GTNAC 3 cut(s) 448, 550, 636
MalI GATC 5 cut(s) 42, 99, 115, 159, 366
MboI GATC 5 cut(s) 40, 97, 113, 157, 364
MfeI CAATTG 2 cut(s) 298, 331
MluCI AATT 5 cut(s) 20, 187, 298, 331, 802
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 9 cut(s) 99, 115, 252, 265, 406, 415, 540, 808, 817
Mph1103I ATGCAT 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 671
MslI CAYNNNNRTG 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 2 cut(s) 298, 331
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 2 cut(s) 461, 696
NdeII GATC 5 cut(s) 40, 97, 113, 157, 364
NlaIII CATG 4 cut(s) 254, 478, 538, 727
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 636
NsiI ATGCAT 1 cut(s) 729
NspI RCATGY 2 cut(s) 254, 727
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 4 cut(s) 320, 437, 466, 614
PflFI GACNNNGTC 1 cut(s) 782
PkrI GCNGC 3 cut(s) 307, 349, 698
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
Ppu21I YACGTR 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 408
PspCI CACGTG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 4 cut(s) 217, 427, 444, 738
RsaNI GTAC 4 cut(s) 216, 426, 443, 737
RseI CAYNNNNRTG 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 381
SatI GCNGC 3 cut(s) 306, 348, 697
Sau3AI GATC 5 cut(s) 40, 97, 113, 157, 364
ScrFI CCNGG 1 cut(s) 410
SfaNI GCATC 3 cut(s) 229, 334, 451
SmiMI CAYNNNNRTG 1 cut(s) 722
Sse9I AATT 5 cut(s) 20, 187, 298, 331, 802
SsiI CCGC 2 cut(s) 228, 634
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 267, 691
TaaI ACNGT 4 cut(s) 550, 622, 746, 782
TaiI ACGT 3 cut(s) 355, 557, 588
TaqI TCGA 2 cut(s) 116, 367
TasI AATT 5 cut(s) 20, 187, 298, 331, 802
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 4 cut(s) 320, 437, 466, 614
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 3 cut(s) 305, 347, 696
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 5 cut(s) 232, 280, 596, 695, 789
TspRI CASTG 1 cut(s) 751
Tth111I GACNNNGTC 1 cut(s) 782
XapI RAATTY 1 cut(s) 187
XceI RCATGY 2 cut(s) 254, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.