Rh2AG396300

Translation machinery associated TMA7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006696
Physical Location & Seq
Forward (+)
59232481 .. 59236136
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG396300.1

Sequence Viewer

Length: 279 bp
ATGTCGTCCAAGCAAGGTGGAAAGGCGAAGCCTTTGAAGCAACCCAAGGCTGAGAAGAAGGAGTACGACGAGGATGATTTGGCCAAGCTTCAGAAGAAGAAGGATGAGGAAAAGAGCAGCTTGGATAGAGTTGTGGGAAATGTATGGGGCAGTGGTCAACTTCCAATTGATAGGTCAGACTTGGCTCCAAGTAGCATTAGAGCTTCTTACAGAAAGCCGCATTCAGTTTCCCTAGTCAATAGGAGGATGGGATCAATACAATATGTTATGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMA7

Protein Analysis

92

Amino Acids

10.34

Weight (kDa)

9.65

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMA7 PF09072 3 - 39 1.9e-13 Translation machinery associated TMA7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 1 cut(s) 65
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 88, 120, 203
AluI AGCT 3 cut(s) 88, 120, 203
AlwI GGATC 1 cut(s) 259
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 83
BarI GAAGNNNNNNTAC 2 cut(s) 47, 79
BbvI GCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 241
BfaI CTAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 118, 218
BlsI GCNGC 2 cut(s) 119, 219
BmiI GGNNCC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 79, 109, 252
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 251
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 79, 109, 252
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 79, 109, 252
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
Csp6I GTAC 1 cut(s) 64
CspCI CAANNNNNGTGG 1 cut(s) 33
CviJI RGCY 8 cut(s) 31, 50, 83, 88, 120, 185, 203, 217
CviKI_1 RGCY 8 cut(s) 31, 50, 83, 88, 120, 185, 203, 217
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 3 cut(s) 145, 264, 269
FalI AAGNNNNNCTT 2 cut(s) 104, 136
Fnu4HI GCNGC 2 cut(s) 118, 218
FokI GGATG 3 cut(s) 86, 116, 259
Fsp4HI GCNGC 2 cut(s) 118, 218
FspBI CTAG 1 cut(s) 233
GluI GCNGC 2 cut(s) 118, 218
HaeIII GGCC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 93, 178
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 52, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 3 cut(s) 67, 106, 109
MfeI CAATTG 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 83
MnlI CCTC 3 cut(s) 64, 100, 237
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 83
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 186
PctI GAATGC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 119, 219
PspN4I GGNNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SatI GCNGC 2 cut(s) 118, 218
Sau3AI GATC 1 cut(s) 251
SetI ASST 5 cut(s) 19, 90, 122, 176, 205
SgeI CNNG 9 cut(s) 22, 26, 58, 82, 97, 133, 193, 201, 245
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 45
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 220
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 117
TspRI CASTG 1 cut(s) 157
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.