Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862437 .. 9870736

Gene Structure 8300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17060.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGCTATCTCCTCCACCTTAGAAGCTCGGTACCTTAATTCTTGCAGAAAGCATGAGGTGGAACCCAATTCAGCAGTTCTCTCATGGTTTACAGAGGCCAAAGTTCAAAGTTCTCAGAATGAGAAGTGTAGCATAACAGTTTCGTTAGACCAGCTTAAGGATGCTGACATTTTGCCACTAAAGGATGTGCTTATGTCAAGTGACTCATCTCATATTCATGCAGTTGACTTATTTCTGGAATTCCATAGTGACTTGGGCACAGAAAGTGTTGTGGATTTGATGAATGGAATCAGTGCAAAGCTTCGAGTTGTCGATCTCCAGGATTTGTCTGTGGGGAAAGAATTTCTGCGGGATCTTTGTCGGGTTTCTTTGGCTTGCCAAGTGTTCAACTTGAGGTCTATTCATATCCAGAAACTCGACATGGTTGGAAGCTTTTTGCGACTACACACCCTTAATCTCGACTTTTGTACTTCACTCGGTAGCTTGCGAAGGGACTGTTTTTCTTGCATGCCAAATTTGACGCGTCTCTCAATTTGTGAGACAAGAATTTCCAATCTCCTGACCACGACTGGTGCTCTGTCAAGACTTCCTTGTTTGCTAGAACTACGGTTCCAAAGCTGTTTATGTTGCAAGGGAACTGGATCCTGTCCTGGTTTAGAAGGGCAACAGAAATTGCAGACTGAGAGTCAAGAAAAAGATGAAACCCTTGTAAGTGCGGGTAAGAAAGCCTGGAGAAATGCGAGTAATACATTAAAGAACTTTGTAACTCATCATCCTTCACCCATATGCTTTGAGAAACATTACCGGGAGTACATCATATCTTCGTTGCCTGGTCTGGAAGTTCTAGATAATTTTCCTATTAGAACGACAGAGAGAGAATTGGCCAAGATGAAATCTGCAAAGTACTTTGAATATCTACCTTATAAGAGACTGCACAAAGAAAGTGTTGTTAGTGTTTTGAATAAGCGTGAAATGGGAACAAGCGGTATACACTTCCAGAAACCATTCAAGCCAAAACAATTATATCCTCATCGAAATGGTCAGAATTTTTTCTTGAGGTCGCTTTGTGCTGCCAAACTTGGGTCCTCAACTTGGCCACTGTTACATCCACTATCTAATTTCAACCACACATGTAAAGCAGAAAACAAGAAGCTTCGTCCGAGGCAGTTCGAGTATCATCCATCAAATCCAAGTCTTATGGTTTTTGGAACTCTGGATGGTGAAGTAGTGGTTACTAACCATGAAAACGGGAAGACGGTTGGTTATATTCCATGCATTGGAGCAATGAGTAGTATCTTGGGACTTTGTTGGCTCAACAAGTCGCCGTCCAAGCTTGTTGCTGGTTCAGATAATGGTTCCTTGAAGTTACTCGACTTGAATAACATGTCACCAGAAGTTGCAGACTCTTGTTGCAGCTCTAGTGGTGCGACTTTTGAAGATTTCGAGCAATTGACTTCTCTTCATGTAAATTCAACCGATGACCAGCTTCTCGCTAGTGGATACTCCAAAGGCGTCGCTCTATACGATGTTGGCAGTGGAAGGCGTTTACAATTGTTCAGTAATCTTCACCAAGAACCAATCAATGTTGCCAAATTCACACACCATTCCCCTTATTTGTTTGCTACTTCATCCTTTGACCATGATGTGAAGATGTGGGATTTGCGAAAGAGCATAAGGAAACCTTGCTATACAGCTTCTAGCTCAAGAGGAAATGTAATGGCTTGCTTTTCTCCTGATGACCATTACTTGCTTGTTTCAGCTGTTGACAACGAGGTTAAGCAACTTTTGGTGGCAGATGGGAGGCTGCACACAAGTTTTGAGATAGCTTCGACTGGAAATCCTCATAACTATACACGGTCGTATTACATGAATGGAAGGGACTATATCATCAGTGGAAGTTGCGATGAGGACGTGGTTCGCATCTGTTGTGCTCAGACTGGAAAGCGGCTTCGAGATGTTTATTTGGAGGATGAATCAGGAAGTTCAATATTCGTGCAGTCCTTAAGAGGCGATCCTTTCAGGCACTTTAACATGAGTATATTAGCCACTGCTACCCGTCCTAGCTCCAAGTGGGAGATTATCAAGGCCAACTTACTTGCATCGAGTGACTATGCAGAAGAGCACTGTTATGGTCAGTGTTTACAGCCTTCTTGCTGTCTGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

723

Amino Acids

80.68

Weight (kDa)

7.7

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	5 - 212	3.4e-49	DWD hypersensitive to UV-B 1, N-terminal
DHU1_N	PF20919	242 - 295	3.1e-09	DWD hypersensitive to UV-B 1, N-terminal
WD40_Prp19	PF24814	390 - 593	1.6e-10	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	398 - 557	3.5e-07	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	404 - 639	5.9e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	408 - 593	5.8e-10	WDR3 first beta-propeller domain
Beta-prop_RIG_2nd	PF23775	435 - 584	6.9e-06	RIG second beta-propeller
WD40_Prp19	PF24814	446 - 594	9.9e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	484 - 653	1.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	486 - 595	8.3e-06	WDR36/Utp21 first beta-propeller
WDR55	PF24796	490 - 603	3e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	1277
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	523
AciI	CCGC	4 cut(s)	349, 716, 984, 1945
AclWI	GGATC	4 cut(s)	360, 636, 649, 2006
AcoI	YGGCCR	2 cut(s)	882, 1094
AcsI	RAATTY	7 cut(s)	239, 341, 514, 546, 1045, 1468, 1592
AcyI	GRCGYC	1 cut(s)	1512
AfaI	GTAC	4 cut(s)	32, 469, 812, 905
AfiI	CCNNNNNNNGG	4 cut(s)	157, 1080, 1092, 1277
AflII	CTTAAG	2 cut(s)	155, 2002
AflIII	ACRYGT	3 cut(s)	521, 1130, 1383
AhdI	GACNNNNNGTC	1 cut(s)	684
AjiI	CACGTC	1 cut(s)	1912
AjnI	CCWGG	4 cut(s)	318, 649, 728, 829
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
Alw21I	GWGCWC	3 cut(s)	577, 1933, 2124
Alw26I	GTCTC	3 cut(s)	530, 533, 922
AlwI	GGATC	4 cut(s)	360, 636, 649, 2006
AoxI	GGCC	4 cut(s)	96, 882, 1094, 2085
ApeKI	GCWGC	3 cut(s)	1070, 1413, 1804
ApoI	RAATTY	7 cut(s)	239, 341, 514, 546, 1045, 1468, 1592
Asp700I	GAANNNNTTC	2 cut(s)	1004, 1049
Asp718I	GGTACC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	1083
AsuC2I	CCSGG	1 cut(s)	806
AsuHPI	GGTGA	4 cut(s)	771, 1232, 1380, 1559
AvaII	GGWCC	1 cut(s)	1083
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	2 cut(s)	884, 1096
BamHI	GGATCC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	1259
Bbv12I	GWGCWC	3 cut(s)	577, 1933, 2124
BbvI	GCAGC	3 cut(s)	1057, 1425, 1791
BccI	CCATC	3 cut(s)	1189, 1211, 1790
BceAI	ACGGC	1 cut(s)	1309
BciT130I	CCWGG	4 cut(s)	320, 651, 730, 831
BciVI	GTATCC	1 cut(s)	1493
BcnI	CCSGG	1 cut(s)	806
BcoDI	GTCTC	3 cut(s)	530, 533, 922
BfaI	CTAG	6 cut(s)	599, 845, 1419, 1494, 1698, 2061
BfrI	CTTAAG	2 cut(s)	155, 2002
BfuI	GTATCC	1 cut(s)	1493
BisI	GCNGC	4 cut(s)	1071, 1414, 1805, 1946
BlsI	GCNGC	4 cut(s)	1072, 1415, 1806, 1947
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	5 cut(s)	320, 651, 730, 806, 831
Bme18I	GGWCC	1 cut(s)	1083
BmeRI	GACNNNNNGTC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	1912
BmgT120I	GGNCC	1 cut(s)	1083
BmiI	GGNNCC	6 cut(s)	32, 63, 611, 643, 1084, 1357
BmrFI	CCNGG	5 cut(s)	320, 651, 730, 806, 831
BmsI	GCATC	3 cut(s)	151, 1929, 2108
BpiI	GAAGAC	1 cut(s)	1259
BpmI	CTGGAG	2 cut(s)	302, 751
BpuEI	CTTGAG	3 cut(s)	412, 1075, 1687
BpuMI	CCSGG	1 cut(s)	806
BsaHI	GRCGYC	1 cut(s)	1512
BsaJI	CCNNGG	1 cut(s)	1160
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 1080, 1092, 1277
Bse1I	ACTGG	4 cut(s)	574, 643, 1837, 1942
Bse3DI	GCAATG	1 cut(s)	1290
BseBI	CCWGG	4 cut(s)	320, 651, 730, 831
BseDI	CCNNGG	1 cut(s)	1160
BseGI	GGATG	8 cut(s)	166, 190, 772, 1105, 1177, 1222, 1628, 1975
BseLI	CCNNNNNNNGG	4 cut(s)	157, 1080, 1092, 1277
BseMI	GCAATG	1 cut(s)	1290
BseMII	CTCAG	3 cut(s)	128, 672, 1946
BseNI	ACTGG	4 cut(s)	574, 643, 1837, 1942
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	1057, 1425, 1791
BsgI	GTGCAG	3 cut(s)	917, 1790, 2015
Bsh1236I	CGCG	1 cut(s)	523
Bsh1285I	CGRYCG	1 cut(s)	1859
BshFI	GGCC	4 cut(s)	98, 884, 1096, 2087
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	1859
BsiHKAI	GWGCWC	3 cut(s)	577, 1933, 2124
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	3 cut(s)	506, 1314, 1892
BslI	CCNNNNNNNGG	4 cut(s)	157, 1080, 1092, 1277
BsmAI	GTCTC	3 cut(s)	530, 533, 922
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	3 cut(s)	506, 1314, 1892
BsnI	GGCC	4 cut(s)	98, 884, 1096, 2087
Bsp1286I	GDGCHC	4 cut(s)	260, 577, 1933, 2124
Bsp143I	GATC	4 cut(s)	313, 352, 641, 2011
BspACI	CCGC	4 cut(s)	349, 716, 984, 1945
BspANI	GGCC	4 cut(s)	98, 884, 1096, 2087
BspCNI	CTCAG	3 cut(s)	127, 673, 1945
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	6 cut(s)	32, 63, 611, 643, 1084, 1357
BspPI	GGATC	4 cut(s)	360, 636, 649, 2006
BspQI	GCTCTTC	1 cut(s)	2112
BspT107I	GGYRCC	1 cut(s)	30
BspTI	CTTAAG	2 cut(s)	155, 2002
BsrDI	GCAATG	1 cut(s)	1290
BsrI	ACTGG	4 cut(s)	574, 643, 1837, 1942
BssECI	CCNNGG	1 cut(s)	1160
BssMI	GATC	4 cut(s)	313, 352, 641, 2011
BssNAI	GTATAC	1 cut(s)	989
BssNI	GRCGYC	1 cut(s)	1512
Bst1107I	GTATAC	1 cut(s)	989
Bst2UI	CCWGG	4 cut(s)	320, 651, 730, 831
Bst4CI	ACNGT	7 cut(s)	139, 497, 609, 1101, 1258, 1857, 2126
Bst6I	CTCTTC	2 cut(s)	1464, 2112
BstACI	GRCGYC	1 cut(s)	1512
BstAFI	CTTAAG	2 cut(s)	155, 2002
BstC8I	GCNNGC	4 cut(s)	376, 485, 509, 1723
BstDEI	CTNAG	4 cut(s)	19, 114, 681, 1932
BstF5I	GGATG	8 cut(s)	166, 190, 772, 1105, 1177, 1222, 1628, 1975
BstFNI	CGCG	1 cut(s)	523
BstKTI	GATC	4 cut(s)	316, 355, 644, 2014
BstMAI	GTCTC	3 cut(s)	530, 533, 922
BstMBI	GATC	4 cut(s)	313, 352, 641, 2011
BstMCI	CGRYCG	1 cut(s)	1859
BstMWI	GCNNNNNNNGC	1 cut(s)	1330
BstNI	CCWGG	4 cut(s)	320, 651, 730, 831
BstNSI	RCATGY	3 cut(s)	511, 1134, 1387
BstSCI	CCNGG	5 cut(s)	318, 649, 728, 804, 829
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	3 cut(s)	1057, 1425, 1791
BstV2I	GAAGAC	1 cut(s)	1259
BstX2I	RGATCY	2 cut(s)	352, 641
BstYI	RGATCY	2 cut(s)	352, 641
BstZ17I	GTATAC	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	1493
BsuRI	GGCC	4 cut(s)	98, 884, 1096, 2087
BtgZI	GCGATG	1 cut(s)	1917
BtrI	CACGTC	1 cut(s)	1912
BtsCI	GGATG	8 cut(s)	166, 190, 772, 1105, 1177, 1222, 1628, 1975
BtsI	GCAGTG	2 cut(s)	1540, 2046
BtsIMutI	CAGTG	7 cut(s)	298, 1097, 1540, 1897, 2046, 2122, 2141
Cac8I	GCNNGC	4 cut(s)	376, 485, 509, 1723
Cfr13I	GGNCC	1 cut(s)	1083
CseI	GACGC	3 cut(s)	512, 529, 1501
Csp6I	GTAC	4 cut(s)	31, 468, 811, 904
CviQI	GTAC	4 cut(s)	31, 468, 811, 904
DdeI	CTNAG	4 cut(s)	19, 114, 681, 1932
DpnI	GATC	4 cut(s)	315, 354, 643, 2013
DpnII	GATC	4 cut(s)	313, 352, 641, 2011
DriI	GACNNNNNGTC	1 cut(s)	684
EaeI	YGGCCR	2 cut(s)	882, 1094
Eam1104I	CTCTTC	2 cut(s)	1464, 2112
Eam1105I	GACNNNNNGTC	1 cut(s)	684
EarI	CTCTTC	2 cut(s)	1464, 2112
Eco47I	GGWCC	1 cut(s)	1083
EcoO109I	RGGNCCY	1 cut(s)	1083
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	4 cut(s)	318, 649, 728, 829
EcoT22I	ATGCAT	1 cut(s)	1277
Esp3I	CGTCTC	1 cut(s)	530
FalI	AAGNNNNNCTT	6 cut(s)	574, 606, 1666, 1698, 2075, 2107
FaqI	GGGAC	3 cut(s)	506, 1314, 1892
FauI	CCCGC	2 cut(s)	342, 709
FauNDI	CATATG	1 cut(s)	785
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	4 cut(s)	1071, 1414, 1805, 1946
FokI	GGATG	8 cut(s)	173, 197, 759, 1092, 1164, 1229, 1615, 1982
Fsp4HI	GCNGC	4 cut(s)	1071, 1414, 1805, 1946
FspBI	CTAG	6 cut(s)	599, 845, 1419, 1494, 1698, 2061
GluI	GCNGC	4 cut(s)	1071, 1414, 1805, 1946
GsuI	CTGGAG	2 cut(s)	302, 751
HaeIII	GGCC	4 cut(s)	98, 884, 1096, 2087
HapII	CCGG	1 cut(s)	805
HgaI	GACGC	3 cut(s)	512, 529, 1501
Hin1I	GRCGYC	1 cut(s)	1512
HincII	GTYRAC	2 cut(s)	226, 1765
HindII	GTYRAC	2 cut(s)	226, 1765
HindIII	AAGCTT	4 cut(s)	299, 430, 1151, 1331
HinfI	GANTC	5 cut(s)	203, 288, 685, 1403, 1973
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	4 cut(s)	771, 1232, 1380, 1559
Hpy166II	GTNNAC	6 cut(s)	90, 226, 989, 1547, 1765, 2141
Hpy188I	TCNGA	5 cut(s)	117, 1044, 1161, 1348, 1935
Hpy8I	GTNNAC	6 cut(s)	90, 226, 989, 1547, 1765, 2141
Hpy99I	CGWCG	1 cut(s)	1517
HpyAV	CCTTC	6 cut(s)	483, 653, 786, 1533, 1869, 2157
HpyCH4III	ACNGT	7 cut(s)	139, 497, 609, 1101, 1258, 1857, 2126
HpyCH4IV	ACGT	1 cut(s)	1911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1330
HpyF3I	CTNAG	4 cut(s)	19, 114, 681, 1932
HpySE526I	ACGT	1 cut(s)	1911
Hsp92I	GRCGYC	1 cut(s)	1512
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	313, 352, 641, 2011
LguI	GCTCTTC	1 cut(s)	2112
LmnI	GCTCC	2 cut(s)	1280, 2069
Lsp1109I	GCAGC	3 cut(s)	1057, 1425, 1791
LweI	GCATC	3 cut(s)	151, 1929, 2108
MaeI	CTAG	6 cut(s)	599, 845, 1419, 1494, 1698, 2061
MaeII	ACGT	1 cut(s)	1911
MaeIII	GTNAC	8 cut(s)	200, 248, 763, 1101, 1231, 1365, 1386, 2105
MalI	GATC	4 cut(s)	315, 354, 643, 2013
MboI	GATC	4 cut(s)	313, 352, 641, 2011
MboII	GAAGA	7 cut(s)	813, 1264, 1448, 1451, 1556, 1660, 2129
MfeI	CAATTG	2 cut(s)	1448, 1550
MflI	RGATCY	2 cut(s)	352, 641
MhlI	GDGCHC	4 cut(s)	260, 577, 1933, 2124
MlsI	TGGCCA	2 cut(s)	884, 1096
MluI	ACGCGT	1 cut(s)	521
MluNI	TGGCCA	2 cut(s)	884, 1096
MlyI	GAGTC	3 cut(s)	197, 694, 1397
MmeI	TCCRAC	1 cut(s)	406
Mox20I	TGGCCA	2 cut(s)	884, 1096
Mph1103I	ATGCAT	1 cut(s)	1277
MroXI	GAANNNNTTC	2 cut(s)	1004, 1049
MscI	TGGCCA	2 cut(s)	884, 1096
MseI	TTAA	7 cut(s)	36, 156, 453, 752, 1776, 2003, 2028
MslI	CAYNNNNRTG	4 cut(s)	216, 784, 1035, 2127
Msp20I	TGGCCA	2 cut(s)	884, 1096
MspA1I	CMGCKG	1 cut(s)	1760
MspCI	CTTAAG	2 cut(s)	155, 2002
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	5 cut(s)	320, 651, 730, 806, 831
MunI	CAATTG	2 cut(s)	1448, 1550
MvaI	CCWGG	4 cut(s)	320, 651, 730, 831
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	1330
NciI	CCSGG	1 cut(s)	806
NdeI	CATATG	1 cut(s)	785
NdeII	GATC	4 cut(s)	313, 352, 641, 2011
NlaIV	GGNNCC	6 cut(s)	32, 63, 611, 643, 1084, 1357
NmuCI	GTSAC	4 cut(s)	200, 248, 1386, 2105
NsiI	ATGCAT	1 cut(s)	1277
NspI	RCATGY	3 cut(s)	511, 1134, 1387
PaeI	GCATGC	1 cut(s)	511
PciI	ACATGT	2 cut(s)	1130, 1383
PciSI	GCTCTTC	1 cut(s)	2112
PcsI	WCGNNNNNNNCGW	1 cut(s)	1521
PdmI	GAANNNNTTC	2 cut(s)	1004, 1049
PfeI	GAWTC	2 cut(s)	288, 1973
PflMI	CCANNNNNTGG	1 cut(s)	1277
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	1072, 1415, 1806, 1947
PleI	GAGTC	3 cut(s)	197, 693, 1397
PpsI	GAGTC	3 cut(s)	197, 693, 1397
PpuMI	RGGWCCY	1 cut(s)	1083
PscI	ACATGT	2 cut(s)	1130, 1383
PsiI	TTATAA	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	1083
Psp6I	CCWGG	4 cut(s)	318, 649, 728, 829
PspGI	CCWGG	4 cut(s)	318, 649, 728, 829
PspN4I	GGNNCC	6 cut(s)	32, 63, 611, 643, 1084, 1357
PspPI	GGNCC	1 cut(s)	1083
PspPPI	RGGWCCY	1 cut(s)	1083
PsuI	RGATCY	2 cut(s)	352, 641
PvuII	CAGCTG	1 cut(s)	1760
RsaI	GTAC	4 cut(s)	32, 469, 812, 905
RsaNI	GTAC	4 cut(s)	31, 468, 811, 904
RseI	CAYNNNNRTG	4 cut(s)	216, 784, 1035, 2127
SapI	GCTCTTC	1 cut(s)	2112
SaqAI	TTAA	7 cut(s)	36, 156, 453, 752, 1776, 2003, 2028
SatI	GCNGC	4 cut(s)	1071, 1414, 1805, 1946
Sau3AI	GATC	4 cut(s)	313, 352, 641, 2011
Sau96I	GGNCC	1 cut(s)	1083
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	3 cut(s)	197, 694, 1397
ScrFI	CCNGG	5 cut(s)	320, 651, 730, 806, 831
SduI	GDGCHC	4 cut(s)	260, 577, 1933, 2124
SfaNI	GCATC	3 cut(s)	151, 1929, 2108
SinI	GGWCC	1 cut(s)	1083
SmiMI	CAYNNNNRTG	4 cut(s)	216, 784, 1035, 2127
SmlI	CTYRAG	5 cut(s)	155, 391, 1054, 1702, 2002
SmoI	CTYRAG	5 cut(s)	155, 391, 1054, 1702, 2002
SphI	GCATGC	1 cut(s)	511
SsiI	CCGC	4 cut(s)	349, 716, 984, 1945
SspI	AATATT	1 cut(s)	1989
SspMI	CTAG	6 cut(s)	599, 845, 1419, 1494, 1698, 2061
StyD4I	CCNGG	5 cut(s)	318, 649, 728, 804, 829
TaaI	ACNGT	7 cut(s)	139, 497, 609, 1101, 1258, 1857, 2126
TaiI	ACGT	1 cut(s)	1914
TatI	WGTACW	3 cut(s)	467, 810, 903
TauI	GCSGC	1 cut(s)	1948
TfiI	GAWTC	2 cut(s)	288, 1973
Tru1I	TTAA	7 cut(s)	36, 156, 453, 752, 1776, 2003, 2028
Tru9I	TTAA	7 cut(s)	36, 156, 453, 752, 1776, 2003, 2028
TscAI	CASTG	7 cut(s)	298, 1104, 1540, 1897, 2053, 2129, 2141
TseFI	GTSAC	4 cut(s)	200, 248, 1386, 2105
TseI	GCWGC	3 cut(s)	1070, 1413, 1804
Tsp45I	GTSAC	4 cut(s)	200, 248, 1386, 2105
TspRI	CASTG	7 cut(s)	298, 1104, 1540, 1897, 2053, 2129, 2141
Van91I	CCANNNNNTGG	1 cut(s)	1277
Vha464I	CTTAAG	2 cut(s)	155, 2002
VpaK11BI	GGWCC	1 cut(s)	1083
XapI	RAATTY	7 cut(s)	239, 341, 514, 546, 1045, 1468, 1592
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	3 cut(s)	511, 1134, 1387
XmiI	GTMKAC	1 cut(s)	988
XmnI	GAANNNNTTC	2 cut(s)	1004, 1049
XspI	CTAG	6 cut(s)	599, 845, 1419, 1494, 1698, 2061
ZrmI	AGTACT	1 cut(s)	905
Zsp2I	ATGCAT	1 cut(s)	1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.