Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Forward (+)

74227352 .. 74228488

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCATCAGAAGTTGCAGACTGTTGTTGCAGCTCTAGTGGTGCAACTTTTGAAGATTTCGAGCAATTGACTTCTCTCCATGTAAATTCAACTGATGACCAGCTTCTCGCTAGTGGATACTCCAAAGGCGTTGCTCTGTATGACGTTGGCAGTGGAAAACGTTTAGAGTTGTTCAGTAATCTTCACCGAGAACCAATCAATGTTGCCAAATTTGCACACCATTCCCCTTATATGTTTGCTACTTCATCCTTTGACCATGATGTGAAGATGTGGGATTTGAGACAGAGCCTAAGGAAACCGTGCTATACAGCTTCTAGCTCGAGAGGAAATGTGATGGCTTGCTTTTCTCCTGATGACCATTATTTGCTTGTTTCAGCTGTTGACAACGAGGTTAAGCAACTTTTGGCGGCAGATGGGAGGCTGCACACAAGTTTTGAGATAGCTTCAACAGGAAGTCCTCATAACTATACGCGGTCGTATTACATGAATGGAAGGGACTATATCATCAGTGGAAGTTGTGATGAGGACGTGATTCGCATCTGCTGTGCTCAAACTGGAAAGCGACTTAGGGATGTTTATTTGGAGGTAGATGATGAATCAGGAAATTCAATATTCGTGCAGTCCTTAAGGGGCGATCCTTTCAGGCATTTTAACATGAGTATATTAGCCACTGCTACGCGCCCAAGCTTCAAGTGGGAGATTATCAAGGTCAACTTACTTGCATCTAGTGACCCTGCAGAGGAACATTGTTATGGCCAGTGTTTGCAGCCTTCTTGCTGTCTGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

263

Amino Acids

29.19

Weight (kDa)

5.41

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	20 - 132	4.1e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	22 - 132	5.4e-09	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	22 - 133	4.2e-06	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	23 - 176	8.2e-12	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	24 - 178	9.2e-15	WDR5 beta-propeller domain
WDR55	PF24796	29 - 134	5.8e-07	WDR55
WD40_Prp19	PF24814	32 - 132	1.3e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	472, 679
AciI	CCGC	2 cut(s)	407, 472
AclI	AACGTT	1 cut(s)	160
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	3 cut(s)	85, 209, 604
AfiI	CCNNNNNNNGG	1 cut(s)	739
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	5 cut(s)	53, 90, 447, 609, 691
AjiI	CACGTC	1 cut(s)	529
AluBI	AGCT	7 cut(s)	33, 103, 311, 318, 377, 443, 687
AluI	AGCT	7 cut(s)	33, 103, 311, 318, 377, 443, 687
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	754
ApeKI	GCWGC	3 cut(s)	30, 421, 766
ApoI	RAATTY	3 cut(s)	85, 209, 604
AspLEI	GCGC	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	319
AxyI	CCTNAGG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	3 cut(s)	42, 408, 778
BccI	CCATC	2 cut(s)	328, 407
BciVI	GTATCC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	4 cut(s)	36, 111, 315, 726
BfmI	CTRYAG	1 cut(s)	735
BfrI	CTTAAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	4 cut(s)	31, 408, 422, 767
BlsI	GCNGC	4 cut(s)	32, 409, 423, 768
BmeT110I	CYCGRG	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	529
BmsI	GCATC	2 cut(s)	546, 731
BsaBI	GATNNNNATC	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse1I	ACTGG	2 cut(s)	559, 757
Bse21I	CCTNAGG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	536
BseGI	GGATG	2 cut(s)	245, 577
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseNI	ACTGG	2 cut(s)	559, 757
BseXI	GCAGC	3 cut(s)	42, 408, 778
BsgI	GTGCAG	2 cut(s)	407, 638
Bsh1236I	CGCG	2 cut(s)	472, 679
Bsh1285I	CGRYCG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	756
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	1 cut(s)	634
BspACI	CCGC	2 cut(s)	407, 472
BspANI	GGCC	1 cut(s)	756
BspFNI	CGCG	2 cut(s)	472, 679
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	1 cut(s)	629
BspTI	CTTAAG	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	559, 757
BssMI	GATC	1 cut(s)	634
Bst4CI	ACNGT	2 cut(s)	23, 300
BstAFI	CTTAAG	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	290, 566
BstF5I	GGATG	2 cut(s)	245, 577
BstFNI	CGCG	2 cut(s)	472, 679
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	634
BstMCI	CGRYCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	2 cut(s)	472, 679
BstV1I	GCAGC	3 cut(s)	42, 408, 778
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	756
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	245, 577
BtsI	GCAGTG	2 cut(s)	157, 669
BtsIMutI	CAGTG	4 cut(s)	157, 514, 669, 764
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	681
CviAII	CATG	4 cut(s)	80, 257, 484, 655
DdeI	CTNAG	2 cut(s)	290, 566
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	754
Eco81I	CCTNAGG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	319
FaeI	CATG	4 cut(s)	83, 260, 487, 658
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	4 cut(s)	79, 256, 483, 654
Fnu4HI	GCNGC	4 cut(s)	31, 408, 422, 767
FokI	GGATG	2 cut(s)	232, 584
Fsp4HI	GCNGC	4 cut(s)	31, 408, 422, 767
FspBI	CTAG	4 cut(s)	36, 111, 315, 726
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	4 cut(s)	31, 408, 422, 767
HaeIII	GGCC	1 cut(s)	756
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	4 cut(s)	83, 260, 487, 658
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HincII	GTYRAC	2 cut(s)	382, 712
HindII	GTYRAC	2 cut(s)	382, 712
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	2 cut(s)	532, 596
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	382, 712
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	321, 350, 600
Hpy8I	GTNNAC	2 cut(s)	382, 712
HpyAV	CCTTC	2 cut(s)	486, 780
HpyCH4III	ACNGT	2 cut(s)	23, 300
HpyCH4IV	ACGT	3 cut(s)	144, 160, 528
HpyCH4V	TGCA	9 cut(s)	17, 30, 44, 215, 424, 619, 722, 737, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	290, 566
HpySE526I	ACGT	3 cut(s)	144, 160, 528
Hsp92II	CATG	4 cut(s)	83, 260, 487, 658
HspAI	GCGC	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	634
LpnPI	CCDG	9 cut(s)	113, 363, 435, 540, 585, 628, 747, 767, 770
Lsp1109I	GCAGC	3 cut(s)	42, 408, 778
LweI	GCATC	2 cut(s)	546, 731
MaeI	CTAG	4 cut(s)	36, 111, 315, 726
MaeII	ACGT	3 cut(s)	144, 160, 528
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	3 cut(s)	65, 173, 277
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	4 cut(s)	65, 85, 209, 604
MluNI	TGGCCA	1 cut(s)	756
MnlI	CCTC	8 cut(s)	317, 382, 411, 468, 517, 577, 733, 779
Mox20I	TGGCCA	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	3 cut(s)	393, 626, 651
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	472, 679
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	4 cut(s)	83, 260, 487, 658
NmuCI	GTSAC	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	532, 596
PkrI	GCNGC	4 cut(s)	32, 409, 423, 768
Psp1406I	AACGTT	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	393, 626, 651
SatI	GCNGC	4 cut(s)	31, 408, 422, 767
Sau3AI	GATC	1 cut(s)	634
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	2 cut(s)	546, 731
SfcI	CTRYAG	1 cut(s)	735
Sfr274I	CTCGAG	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	319, 625
SmoI	CTYRAG	2 cut(s)	319, 625
Sse9I	AATT	4 cut(s)	65, 85, 209, 604
SsiI	CCGC	2 cut(s)	407, 472
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	4 cut(s)	36, 111, 315, 726
TaaI	ACNGT	2 cut(s)	23, 300
TaiI	ACGT	3 cut(s)	147, 163, 531
TaqI	TCGA	2 cut(s)	60, 320
TasI	AATT	4 cut(s)	65, 85, 209, 604
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	532, 596
Tru1I	TTAA	3 cut(s)	393, 626, 651
Tru9I	TTAA	3 cut(s)	393, 626, 651
TscAI	CASTG	4 cut(s)	157, 514, 676, 764
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	30, 421, 766
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	234, 500, 609
TspRI	CASTG	4 cut(s)	157, 514, 676, 764
Vha464I	CTTAAG	1 cut(s)	625
XapI	RAATTY	3 cut(s)	85, 209, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	690
XhoI	CTCGAG	1 cut(s)	319
XspI	CTAG	4 cut(s)	36, 111, 315, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.