Rroxscaffold_2G00136510

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004735
Physical Location & Seq
Forward (+)
74222855 .. 74225212
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136510.1

Sequence Viewer

Length: 2358 bp
ATGACCCTGTACATGCCCTTATTCAGGTCATGCACAACCCTACGAACACTGACCCGACTCCACGCCCATCTCCTAGTCTCAGGTCTCCACAGACAGCCACAAGCCTCCACCAAGCTCATCGAGTCCTACTCCCAACTGGGTTCCCTCCACTCCTCAACCCAGCTGTTTCAAACCTTCCCTAACCAAGACCCATTCATGTGGGGCGTCCTCATCAAATGCTTCATGTGGAACCGCCGCTTCCACGAAGCCATCTCACTCTACCAAGAAATGCTGCAATTCTCAGTGGGCATGAGTAGGTTTATATTCCCTTCTGTTTTGAGAGCCTGTTCGGGCTGTGGTGAGCTCAGTGTGGGTAGGAAGGTCCATGGGAGGATAGTGAAATGTGGGTTCGACTCGGATGCTGTGGTTGAGACCGCATTGCTGGGTTTGTATGGGGAGCTGGGGTGTTTGGATGATGCAAGAAAGGTGTTTGTTGAAATGCATGTGAGAGACGCTGTGTCGTGGAGTTCGGTTATCTTGTGTTGTGTGGAGAATGGAGAGGTGAGTGAAGGGTTGGAGATGTTCCGTGGGATGGTAATGGAAGAAGGTGTTGTACCGGATTCGGTCACAATGCTCAGTGTAGCTGAGGCTTGTGGGAAGTTGGGGTGGCGGAGAGGTGCTAGGTCGGTACATGGTTATGTTGTTAGAAGGGAGTTTAGAAAGGACGTGTCTTTGGATAGTTCTCTGATTACAATGTACAGCAAGTGTGGCGACTTGCAGAGTCCGGAAAGGATTTTTCGTAATGTTGCTCGTCGGCACACTGCATCTTGGACCGCGATGATTTCCTGCTACAATCAAGCTGGTTCTTTCTCAGAAGCACTATATGTTTTTGTTAAGATGCAGGAGTCTGGAGTGGAGCCGAATGCTGTGACGTTGATGTGCATTCTAGTGTCTTGTGTTGGGTTAGGCTTGCTCAAAGAAGGGAAGTCTGTTCATGGATTTGTTATAAGAAAGGCTGTAGACCCTGACCTTGATTTTTTGGGGTCAGCATTGTTAGAGTTATATGCTGAAATTGGGGGACTAAGCTATAGTCAGAAAATTCTTAATATGATTGGAGTCAGAAATGTTGTTCCGTGGAATACAATTATTTCAGTTTATTGTCAGAAAGGTCTGCTGAGAGAGGCATTGCTACTCTTTGTGCAGATGCAGGCCCAAGGACTAATGCCGGATTCATTCAGCATGTCAAGTGCTCTCGCCGCTTGTGGAAAGATGGGTTTATTAGAGATTGGGCATCAGATACATGGTCATATAGTCAAACGAGGCTATATGGATGAGTTTGTGTTGAACTCACTAATTGATATGTACTCAAAATGTGGGTTTGTAGATTCAGCATACATAATATTTAACGAGATGAAACATCCTGGTATCATAACGTGGAATTCTATGATCTCGGGATTTTCTCGTAGTGGTAACTCTGTCATGGCTATCAGTCTTTTTGACCGAATTTACCTGAACCGTCTTGAGATTGATGAAGTCACCATTTTAAGTGTTATTCAAGCTTGCTCCGAATTAGGTTATTTAGAAAAGGGAAAATGGGTTCACCACAAGCTCATAACCTATGGTGTGAGGAAAGACCTCTATATTGATACAGCTCTAACTGACATGTATGCTAAGTGTGGTGACCTTCAGTCAGCTCAAGGTGTATTTGATATGATGGTAGAAAGAACCGTTGTGTCTTGGAGTGTCATGATCGCTGGGTATGGAATACATGGCAAGATACGTGCTGCCATATCACTCTTTAGTCAAATGTTAGAAACTGGAATCGAACCAAATGAGGTTACGTTCATGAATATTCTTTCAGCTTGTAGTCATGCAGGTGCTGTTGAAGAAGGGAGGTTATATTTTAGATCAATGAGGGATTTCGGCATTGAGCCCAATGCAGAACATTTTGCAAGTATGGTTGACCTTCTAAGTCGAGCTGGTGATCTGAATGGAGCCTATGATATCATTAAATCAATACCATTCTCTGTTGATGCCAGCATATGGGGTGCCCTGCTCAATGGATGTCGAATCCACCAGAGGATGGACATGATTAAAAGCATCGAAAAAGACCTTTTATATATTAAGACAGATGACACTGGCTACTACACCTTATTTTCTAACATATATGCTGAAGGAGGGAACTGGGAGGAATTTGGGAATGTGAGATTAATGATGAAAGGTATTGGTCTCAGGAAGGTCCCTGGATACAGTGTAATTGAGATTGATAAGCGAGTGTATAGATTCGGAGCCGGAGATACTCCTCTTCCTCAAATGAAGGAGGTTTACGGGTTTTTGGAAAACTTTCAGTGTCTAACTCATGGAATAGGGATAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

785

Amino Acids

87.76

Weight (kDa)

6.61

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 267 - 308 2.9e-07 PPR repeat family
PPR PF01535 269 - 298 1.2e-06 PPR repeat
PPR_2 PF13041 367 - 415 2.9e-10 PPR repeat family
PPR_1 PF12854 367 - 396 1.7e-06 PPR repeat
PPR PF01535 371 - 399 8e-07 PPR repeat
PPR_2 PF13041 467 - 515 8.6e-07 PPR repeat family
PPR PF01535 470 - 494 9e-06 PPR repeat
PPR_2 PF13041 569 - 616 1.9e-11 PPR repeat family
PPR PF01535 571 - 601 5.6e-06 PPR repeat
E_motif PF20431 697 - 747 8.7e-11 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AarI CACCTGC 1 cut(s) 1844
Acc36I ACCTGC 1 cut(s) 1844
AccB1I GGYRCC 1 cut(s) 2027
AccB7I CCANNNNNTGG 2 cut(s) 2022, 2062
AccI GTMKAC 1 cut(s) 999
AccII CGCG 1 cut(s) 815
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 6 cut(s) 232, 235, 414, 649, 813, 1236
AcsI RAATTY 4 cut(s) 1077, 1417, 1482, 2171
AcuI CTGAAG 2 cut(s) 1649, 2172
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 5 cut(s) 11, 594, 669, 737, 1343
AfiI CCNNNNNNNGG 4 cut(s) 24, 571, 2022, 2062
AflIII ACRYGT 2 cut(s) 705, 1641
AgsI TTSAA 5 cut(s) 170, 476, 1324, 1535, 1865
AhdI GACNNNNNGTC 2 cut(s) 496, 1666
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 2 cut(s) 1399, 2221
AloI GAACNNNNNNTCC 2 cut(s) 1560, 1592
Alw21I GWGCWC 2 cut(s) 345, 1231
Alw26I GTCTC 5 cut(s) 82, 89, 404, 483, 2213
AlwNI CAGNNNCTG 1 cut(s) 1859
Ama87I CYCGRG 1 cut(s) 1429
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 1 cut(s) 1188
ApeKI GCWGC 2 cut(s) 271, 1763
ApoI RAATTY 4 cut(s) 1077, 1417, 1482, 2171
AseI ATTAAT 1 cut(s) 2189
Asp700I GAANNNNTTC 1 cut(s) 2322
AspS9I GGNCC 4 cut(s) 361, 810, 1189, 2218
AsuHPI GGTGA 6 cut(s) 350, 553, 1507, 1571, 1670, 1973
AvaI CYCGRG 1 cut(s) 1429
AvaII GGWCC 3 cut(s) 361, 810, 2218
BaeGI GKGCMC 1 cut(s) 2032
BanI GGYRCC 1 cut(s) 2027
BanII GRGCYC 2 cut(s) 345, 1914
BarI GAAGNNNNNNTAC 4 cut(s) 576, 608, 2288, 2320
Bbv12I GWGCWC 2 cut(s) 345, 1231
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 258, 1750
BccI CCATC 6 cut(s) 75, 257, 565, 1243, 1687, 2056
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 2 cut(s) 1401, 2223
BciVI GTATCC 1 cut(s) 2219
BcoDI GTCTC 5 cut(s) 82, 89, 404, 483, 2213
BfaI CTAG 3 cut(s) 74, 660, 926
BfmI CTRYAG 2 cut(s) 996, 1066
BfuAI ACCTGC 1 cut(s) 1844
BfuI GTATCC 1 cut(s) 2219
BisI GCNGC 4 cut(s) 235, 272, 1236, 1764
BlsI GCNGC 4 cut(s) 236, 273, 1237, 1765
Bme1390I CCNGG 2 cut(s) 1401, 2223
Bme18I GGWCC 3 cut(s) 361, 810, 2218
BmeRI GACNNNNNGTC 2 cut(s) 496, 1666
BmeT110I CYCGRG 1 cut(s) 1429
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 4 cut(s) 361, 810, 1189, 2218
BmiI GGNNCC 7 cut(s) 142, 230, 897, 1975, 2029, 2220, 2269
BmrFI CCNGG 2 cut(s) 1401, 2223
BmrI ACTGGG 2 cut(s) 146, 2173
BmsI GCATC 8 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088
BmuI ACTGGG 2 cut(s) 146, 2173
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 2 cut(s) 1520, 1659
BsaAI YACGTR 1 cut(s) 1760
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 3 cut(s) 89, 404, 2213
BsaJI CCNNGG 5 cut(s) 364, 565, 1112, 1192, 2221
BsaWI WCCGGW 2 cut(s) 595, 763
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 571, 2022, 2062
Bse1I ACTGG 4 cut(s) 141, 1801, 2122, 2168
Bse3DI GCAATG 2 cut(s) 416, 1163
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 2 cut(s) 1401, 2223
BseDI CCNNGG 5 cut(s) 364, 565, 1112, 1192, 2221
BseGI GGATG 7 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067
BseLI CCNNNNNNNGG 4 cut(s) 24, 571, 2022, 2062
BseMI GCAATG 2 cut(s) 416, 1163
BseMII CTCAG 8 cut(s) 93, 294, 358, 615, 628, 864, 1145, 2224
BseNI ACTGG 4 cut(s) 141, 1801, 2122, 2168
BseRI GAGGAG 2 cut(s) 142, 2271
BseSI GKGCMC 1 cut(s) 2032
BseXI GCAGC 2 cut(s) 258, 1750
BseYI CCCAGC 4 cut(s) 159, 421, 439, 1733
BsgI GTGCAG 1 cut(s) 1199
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 1 cut(s) 1190
BshNI GGYRCC 1 cut(s) 2027
BsiHKAI GWGCWC 2 cut(s) 345, 1231
BsiHKCI CYCGRG 1 cut(s) 1429
BsiSI CCGG 4 cut(s) 596, 764, 1205, 2271
BslFI GGGAC 2 cut(s) 1071, 2204
BslI CCNNNNNNNGG 4 cut(s) 24, 571, 2022, 2062
BsmAI GTCTC 5 cut(s) 82, 89, 404, 483, 2213
BsmBI CGTCTC 1 cut(s) 483
BsmFI GGGAC 2 cut(s) 1071, 2204
BsmI GAATGC 2 cut(s) 907, 921
BsnI GGCC 1 cut(s) 1190
Bso31I GGTCTC 3 cut(s) 89, 404, 2213
BsoBI CYCGRG 1 cut(s) 1429
Bsp1286I GDGCHC 4 cut(s) 345, 1231, 1914, 2032
Bsp13I TCCGGA 1 cut(s) 763
Bsp1407I TGTACA 2 cut(s) 9, 735
Bsp143I GATC 4 cut(s) 1425, 1728, 1886, 1963
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 6 cut(s) 232, 235, 414, 649, 813, 1236
BspANI GGCC 1 cut(s) 1190
BspCNI CTCAG 8 cut(s) 92, 293, 357, 616, 627, 863, 1146, 2223
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 1 cut(s) 815
BspHI TCATGA 2 cut(s) 1725, 1824
BspLI GGNNCC 7 cut(s) 142, 230, 897, 1975, 2029, 2220, 2269
BspMI ACCTGC 1 cut(s) 1844
BspT107I GGYRCC 1 cut(s) 2027
BspTNI GGTCTC 3 cut(s) 89, 404, 2213
BsrDI GCAATG 2 cut(s) 416, 1163
BsrGI TGTACA 2 cut(s) 9, 735
BsrI ACTGG 4 cut(s) 141, 1801, 2122, 2168
BssECI CCNNGG 5 cut(s) 364, 565, 1112, 1192, 2221
BssMI GATC 4 cut(s) 1425, 1728, 1886, 1963
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 364, 1192
Bst2UI CCWGG 2 cut(s) 1401, 2223
Bst4CI ACNGT 3 cut(s) 1496, 1708, 2231
Bst6I CTCTTC 1 cut(s) 2289
BstACI GRCGYC 1 cut(s) 204
BstAUI TGTACA 2 cut(s) 9, 735
BstBAI YACGTR 1 cut(s) 1760
BstC8I GCNNGC 4 cut(s) 950, 1188, 1540, 2017
BstDSI CCRYGG 3 cut(s) 364, 565, 1112
BstEII GGTNACC 1 cut(s) 1658
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 7 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067
BstFNI CGCG 1 cut(s) 815
BstKTI GATC 4 cut(s) 1428, 1731, 1889, 1966
BstMAI GTCTC 5 cut(s) 82, 89, 404, 483, 2213
BstMBI GATC 4 cut(s) 1425, 1728, 1886, 1963
BstMWI GCNNNNNNNGC 2 cut(s) 747, 1235
BstNI CCWGG 2 cut(s) 1401, 2223
BstNSI RCATGY 4 cut(s) 16, 485, 1222, 1645
BstPI GGTNACC 1 cut(s) 1658
BstSCI CCNGG 2 cut(s) 1399, 2221
BstSFI CTRYAG 2 cut(s) 996, 1066
BstSLI GKGCMC 1 cut(s) 2032
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 2 cut(s) 258, 1750
BstXI CCANNNNNNTGG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 2219
BsuRI GGCC 1 cut(s) 1190
BtgI CCRYGG 3 cut(s) 364, 565, 1112
BtgZI GCGATG 1 cut(s) 830
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 7 cut(s) 403, 457, 576, 1315, 1396, 2048, 2067
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 8 cut(s) 47, 288, 352, 622, 798, 2115, 2236, 2333
BveI ACCTGC 1 cut(s) 1844
Cac8I GCNNGC 4 cut(s) 950, 1188, 1540, 2017
CaiI CAGNNNCTG 1 cut(s) 1859
CciI TCATGA 2 cut(s) 1725, 1824
Cfr13I GGNCC 4 cut(s) 361, 810, 1189, 2218
CseI GACGC 2 cut(s) 193, 500
Csp6I GTAC 5 cut(s) 10, 593, 668, 736, 1342
CviQI GTAC 5 cut(s) 10, 593, 668, 736, 1342
DpnI GATC 4 cut(s) 1427, 1730, 1888, 1965
DpnII GATC 4 cut(s) 1425, 1728, 1886, 1963
DriI GACNNNNNGTC 2 cut(s) 496, 1666
Eam1104I CTCTTC 1 cut(s) 2289
Eam1105I GACNNNNNGTC 2 cut(s) 496, 1666
EarI CTCTTC 1 cut(s) 2289
EciI GGCGGA 1 cut(s) 664
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 364, 1192
Eco24I GRGCYC 2 cut(s) 345, 1914
Eco31I GGTCTC 3 cut(s) 89, 404, 2213
Eco32I GATATC 1 cut(s) 1984
Eco47I GGWCC 3 cut(s) 361, 810, 2218
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 1649, 2172
Eco88I CYCGRG 1 cut(s) 1429
Eco91I GGTNACC 1 cut(s) 1658
EcoICRI GAGCTC 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 2218
EcoO65I GGTNACC 1 cut(s) 1658
EcoRI GAATTC 1 cut(s) 1417
EcoRII CCWGG 2 cut(s) 1399, 2221
EcoRV GATATC 1 cut(s) 1984
EcoT14I CCWWGG 2 cut(s) 364, 1192
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 2 cut(s) 345, 1914
ErhI CCWWGG 2 cut(s) 364, 1192
Esp3I CGTCTC 1 cut(s) 483
FaqI GGGAC 2 cut(s) 1071, 2204
FauNDI CATATG 1 cut(s) 2021
FblI GTMKAC 1 cut(s) 999
Fnu4HI GCNGC 4 cut(s) 235, 272, 1236, 1764
FokI GGATG 7 cut(s) 410, 464, 583, 1322, 1383, 2055, 2074
FriOI GRGCYC 2 cut(s) 345, 1914
Fsp4HI GCNGC 4 cut(s) 235, 272, 1236, 1764
FspBI CTAG 3 cut(s) 74, 660, 926
GluI GCNGC 4 cut(s) 235, 272, 1236, 1764
GsaI CCCAGC 4 cut(s) 163, 425, 443, 1737
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 1 cut(s) 1190
HapII CCGG 4 cut(s) 596, 764, 1205, 2271
HgaI GACGC 2 cut(s) 193, 500
Hin1I GRCGYC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 1942
HindII GTYRAC 1 cut(s) 1942
HindIII AAGCTT 1 cut(s) 1536
HpaII CCGG 4 cut(s) 596, 764, 1205, 2271
HphI GGTGA 6 cut(s) 350, 553, 1507, 1571, 1670, 1973
Hpy166II GTNNAC 4 cut(s) 1000, 1579, 1942, 2305
Hpy188III TCNNGA 7 cut(s) 764, 888, 1431, 1499, 1726, 1825, 2212
Hpy8I GTNNAC 4 cut(s) 1000, 1579, 1942, 2305
Hpy99I CGWCG 1 cut(s) 795
HpyCH4III ACNGT 3 cut(s) 1496, 1708, 2231
HpyCH4IV ACGT 5 cut(s) 705, 911, 1412, 1759, 1820
HpyF10VI GCNNNNNNNGC 2 cut(s) 747, 1235
HpySE526I ACGT 5 cut(s) 705, 911, 1412, 1759, 1820
Hsp92I GRCGYC 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 763
Kzo9I GATC 4 cut(s) 1425, 1728, 1886, 1963
LmnI GCTCC 5 cut(s) 436, 895, 1547, 1973, 2267
Lsp1109I GCAGC 2 cut(s) 258, 1750
LweI GCATC 8 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088
MaeI CTAG 3 cut(s) 74, 660, 926
MaeII ACGT 5 cut(s) 705, 911, 1412, 1759, 1820
MaeIII GTNAC 6 cut(s) 604, 907, 1448, 1513, 1658, 1816
MalI GATC 4 cut(s) 1427, 1730, 1888, 1965
MboI GATC 4 cut(s) 1425, 1728, 1886, 1963
MboII GAAGA 3 cut(s) 593, 1877, 2276
MhlI GDGCHC 4 cut(s) 345, 1231, 1914, 2032
MlyI GAGTC 6 cut(s) 51, 131, 386, 769, 893, 1104
MmeI TCCRAC 1 cut(s) 534
Mph1103I ATGCAT 1 cut(s) 483
MroI TCCGGA 1 cut(s) 763
MroXI GAANNNNTTC 1 cut(s) 2322
MseI TTAA 8 cut(s) 873, 1083, 1383, 1523, 1989, 2073, 2103, 2189
MslI CAYNNNNRTG 4 cut(s) 196, 675, 926, 1854
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 4 cut(s) 596, 764, 1205, 2271
MspR9I CCNGG 2 cut(s) 1401, 2223
Mva1269I GAATGC 2 cut(s) 907, 921
MvaI CCWGG 2 cut(s) 1401, 2223
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 2 cut(s) 747, 1235
NcoI CCATGG 1 cut(s) 364
NdeI CATATG 1 cut(s) 2021
NdeII GATC 4 cut(s) 1425, 1728, 1886, 1963
NlaIV GGNNCC 7 cut(s) 142, 230, 897, 1975, 2029, 2220, 2269
NmuCI GTSAC 4 cut(s) 604, 907, 1513, 1658
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 4 cut(s) 16, 485, 1222, 1645
PagI TCATGA 2 cut(s) 1725, 1824
PaqCI CACCTGC 1 cut(s) 1844
PciI ACATGT 1 cut(s) 1641
PctI GAATGC 2 cut(s) 907, 921
PdmI GAANNNNTTC 1 cut(s) 2322
PfeI GAWTC 6 cut(s) 599, 1208, 1364, 1800, 2049, 2262
PflMI CCANNNNNTGG 2 cut(s) 2022, 2062
PkrI GCNGC 4 cut(s) 236, 273, 1237, 1765
PleI GAGTC 6 cut(s) 51, 130, 386, 768, 892, 1103
PpsI GAGTC 6 cut(s) 51, 130, 386, 768, 892, 1103
Ppu21I YACGTR 1 cut(s) 1760
PpuMI RGGWCCY 1 cut(s) 2218
PscI ACATGT 1 cut(s) 1641
PshBI ATTAAT 1 cut(s) 2189
PsiI TTATAA 1 cut(s) 986
Psp124BI GAGCTC 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 2218
Psp6I CCWGG 2 cut(s) 1399, 2221
PspEI GGTNACC 1 cut(s) 1658
PspFI CCCAGC 4 cut(s) 159, 421, 439, 1733
PspGI CCWGG 2 cut(s) 1399, 2221
PspN4I GGNNCC 7 cut(s) 142, 230, 897, 1975, 2029, 2220, 2269
PspPI GGNCC 4 cut(s) 361, 810, 1189, 2218
PspPPI RGGWCCY 1 cut(s) 2218
PstNI CAGNNNCTG 1 cut(s) 1859
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 5 cut(s) 11, 594, 669, 737, 1343
RsaNI GTAC 5 cut(s) 10, 593, 668, 736, 1342
RseI CAYNNNNRTG 4 cut(s) 196, 675, 926, 1854
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 8 cut(s) 873, 1083, 1383, 1523, 1989, 2073, 2103, 2189
SatI GCNGC 4 cut(s) 235, 272, 1236, 1764
Sau3AI GATC 4 cut(s) 1425, 1728, 1886, 1963
Sau96I GGNCC 4 cut(s) 361, 810, 1189, 2218
SchI GAGTC 6 cut(s) 51, 131, 386, 769, 893, 1104
ScrFI CCNGG 2 cut(s) 1401, 2223
SduI GDGCHC 4 cut(s) 345, 1231, 1914, 2032
SfaNI GCATC 8 cut(s) 388, 445, 812, 867, 1173, 1279, 2002, 2088
SfcI CTRYAG 2 cut(s) 996, 1066
SinI GGWCC 3 cut(s) 361, 810, 2218
SmiMI CAYNNNNRTG 4 cut(s) 196, 675, 926, 1854
SmlI CTYRAG 2 cut(s) 1499, 1674
SmoI CTYRAG 2 cut(s) 1499, 1674
SsiI CCGC 6 cut(s) 232, 235, 414, 649, 813, 1236
SspI AATATT 2 cut(s) 1380, 1831
SspMI CTAG 3 cut(s) 74, 660, 926
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 1399, 2221
StyI CCWWGG 2 cut(s) 364, 1192
TaaI ACNGT 3 cut(s) 1496, 1708, 2231
TaiI ACGT 5 cut(s) 708, 914, 1415, 1762, 1823
TaqI TCGA 6 cut(s) 120, 390, 1803, 1954, 2047, 2082
TaqII GACCGA 2 cut(s) 592, 1494
TatI WGTACW 3 cut(s) 9, 735, 1341
TauI GCSGC 2 cut(s) 237, 1238
TfiI GAWTC 6 cut(s) 599, 1208, 1364, 1800, 2049, 2262
Tru1I TTAA 8 cut(s) 873, 1083, 1383, 1523, 1989, 2073, 2103, 2189
Tru9I TTAA 8 cut(s) 873, 1083, 1383, 1523, 1989, 2073, 2103, 2189
TscAI CASTG 8 cut(s) 54, 288, 352, 622, 805, 2122, 2236, 2333
TseFI GTSAC 4 cut(s) 604, 907, 1513, 1658
TseI GCWGC 2 cut(s) 271, 1763
Tsp45I GTSAC 4 cut(s) 604, 907, 1513, 1658
TspGWI ACGGA 2 cut(s) 554, 1101
TspRI CASTG 8 cut(s) 54, 288, 352, 622, 805, 2122, 2236, 2333
Van91I CCANNNNNTGG 2 cut(s) 2022, 2062
VpaK11BI GGWCC 3 cut(s) 361, 810, 2218
VspI ATTAAT 1 cut(s) 2189
XagI CCTNNNNNAGG 1 cut(s) 22
XapI RAATTY 4 cut(s) 1077, 1417, 1482, 2171
XceI RCATGY 4 cut(s) 16, 485, 1222, 1645
XmiI GTMKAC 1 cut(s) 999
XmnI GAANNNNTTC 1 cut(s) 2322
XspI CTAG 3 cut(s) 74, 660, 926
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.