Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

18794733 .. 18801858

Gene Structure 7126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGGCTACCTCCGGCAGCTTAGAAGCTTGGTACCTTAATTCTTGCAGAAAGCATGAGGTAAAGCCCAATTCAGCAGTTCTCTCATGGTTTACTCAGGCCAAAGTTCAAAGTTCTCAGAATGAGAAGTGTAGCATAACAATTTCATTAGACCAGCTAAAGGATGCTGACATTTTGCCACTAAAGGACGTGCTTATGTCAAGTGACTCATCTCATATTCTTGCAGTTGACTTATTTCTGGAATTCCATAGTGATCTGGGCACAGAAAGTGTTGTGGATTTGATGAATGGACTCAATGCAAAGCTTCGAGTTGTCGATCTCCAGGATTTGTCTTTGGGGAAAGAATTTCTGCGGGATCTTTGTCAGGGTTCCTTGGCTTGCCAAGTCTTCAACTTGCGGTCCATTCATATCCAAAAACTCGACATGATTGGAAACTTTTTGCGACTACACACCCTTAATCTCGATTTTTGTACTTCACTCGGTAGTTTGCGAAGGGACTGTTTTTCTTGCATGCCAAATCTGACGCGCCTCTCAATGTGTGAGACAAGAATTTCCAATCTCCTGACCACGACTGGTGCTCTGTCAAGACTTCCTTGTTTGCTAGAACTACGGTTCCAAAGCTGTTTATGTTGCAAGGAAACTGGATCATGTCCTGGTTTAGAAGGGCAACAGAAATTGCAGACTGAGACTCAAGAAAAAGATGAAACCCTTGTAAGTGAGGGTAAGAAAGCCTCGAGGAATGTGAGTATTACATTGAAGAACTTTGTAACTCATCATCCTTCACCCATATGCTTTGAGAAACATTATCGGGAGTATATCATATCTTCGCTGCCTGGTCTGGAAGTTTTAGATAATTTTCCTATTAGAATGACGGAGAGGGAATTGGCCAAGATGACGTCTGCAAAGTACTATGAATACTTACCTTATAAGAGACGGCACAAAGAAAGTGTTGTTAGTGTTTTGAATAAGCGTGAAATGGGAACTAGTGGTGTACACTTCCAGAAACCATTCAAGCCAAAACAATTATATCCTCATCGAAATGGTCAGAATTTTTTCTTGAGGTCGCTGTGTGCTGCCAAACTTGGGTCTTCAACTTGGCCACTGTTGCATCCACTTTCCAATTTCAACCACACATGTAAAGCAGAAAACAAGAAGCTTCGTCCAAGGCAGTTTGAGTATCATCCATCAAACCCAAGTCTTATGGTTTTCGGAACTCTGGATGGTGAAGTAGTGGTTACTAACCATGAAAACGGGAAGATGGTTGGTTATATTCCATGCATAGGAGCAATGAGTAGTGTCTTGGGGCTTTGTTGGCTCAACAAGTCTCCGTCCAAGCTTGTTGCTGGTTCAGATAAGGGCTCCTTGAAGTTACTCGACATCAACAACATGTCACCAGAAGTTGCAGACTCTTGTTGCAGCTCTAGTGGTGCAACTTTTGAAGATTTCGAGCAATTGACTTCTCTTCATGTAAATTCAACTGATGACCAGCTTCTCGCTAGTGGATACTCCAAAGGCCTTGCTCTGTATGACGTTGGCAGTGGAAAGCGTTTAGAGTTGTTCAGTAATCTTCACCGAGAACCGATCAATGTTGCCAAATTTGCACACCATTCCCCTTATATGTTTGCTACTTCATCCTTTGACCATGATGTGAAGATGTGGGATTTGAGACAGAGCCCAAGGAAACCGTGCTATACAGCTTCTAGCTCAAGAGGAAATGTGATGGCTTGCTTTTCTCCTGATGACCATTATTTGCTTGTTTCAGCTGTTGACAACGAGGTTAAGCAACTTTTGGCGGCAGATGGGAGGCTGCACATGAGTTTTGAGATAGCTTCAACAGGAAGTCCTCATAACTATACGCGGTCGTATTACATGAATGGAAGGGACTATATCATCAGTGGAAGTTGCGATGAGGACCTGATTCGCATCTGCTGTGCTCAAACTGGAAAGCGACTTAGGGATGTTTATTTGGAGGTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

658

Amino Acids

73.82

Weight (kDa)

7.73

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	6 - 214	4.2e-49	DWD hypersensitive to UV-B 1, N-terminal
DHU1_N	PF20919	243 - 297	3.1e-09	DWD hypersensitive to UV-B 1, N-terminal
WD40_Prp19	PF24814	390 - 593	3.4e-10	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	398 - 570	4.5e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	403 - 638	8.3e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	403 - 593	2.9e-09	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	404 - 595	2.9e-08	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	484 - 602	3.9e-10	THOC3 beta-propeller domain
WDR55	PF24796	490 - 597	4.1e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AatII	GACGTC	1 cut(s)	896
AbsI	CCTCGAGG	1 cut(s)	730
Acc65I	GGTACC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	30
AccII	CGCG	2 cut(s)	523, 1855
AciI	CCGC	4 cut(s)	349, 394, 1790, 1855
AclWI	GGATC	2 cut(s)	360, 649
AcoI	YGGCCR	2 cut(s)	882, 1094
AcsI	RAATTY	6 cut(s)	239, 341, 546, 1045, 1468, 1592
AcyI	GRCGYC	1 cut(s)	893
AfaI	GTAC	4 cut(s)	32, 469, 905, 990
AfiI	CCNNNNNNNGG	3 cut(s)	157, 1080, 1277
AflIII	ACRYGT	2 cut(s)	1130, 1383
AhlI	ACTAGT	1 cut(s)	980
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	318, 649, 829
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
Alw21I	GWGCWC	2 cut(s)	577, 1933
Alw26I	GTCTC	5 cut(s)	533, 677, 922, 1326, 1657
AlwI	GGATC	2 cut(s)	360, 649
Ama87I	CYCGRG	1 cut(s)	730
AoxI	GGCC	4 cut(s)	96, 882, 1094, 1510
ApeKI	GCWGC	5 cut(s)	15, 826, 1070, 1413, 1804
ApoI	RAATTY	6 cut(s)	239, 341, 546, 1045, 1468, 1592
Asp700I	GAANNNNTTC	2 cut(s)	1004, 1049
Asp718I	GGTACC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	396, 1909
AsuHPI	GGTGA	4 cut(s)	771, 1232, 1380, 1559
AvaI	CYCGRG	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	396, 1909
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	2 cut(s)	884, 1096
BanI	GGYRCC	1 cut(s)	30
BanII	GRGCYC	2 cut(s)	1358, 1673
BbsI	GAAGAC	2 cut(s)	376, 1077
Bbv12I	GWGCWC	2 cut(s)	577, 1933
BbvI	GCAGC	5 cut(s)	27, 813, 1057, 1425, 1791
BccI	CCATC	5 cut(s)	1189, 1211, 1249, 1711, 1790
BceAI	ACGGC	1 cut(s)	947
BciT130I	CCWGG	3 cut(s)	320, 651, 831
BciVI	GTATCC	1 cut(s)	1493
BcoDI	GTCTC	5 cut(s)	533, 677, 922, 1326, 1657
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	5 cut(s)	599, 981, 1419, 1494, 1698
BfuI	GTATCC	1 cut(s)	1493
BisI	GCNGC	6 cut(s)	16, 827, 1071, 1414, 1791, 1805
BlsI	GCNGC	6 cut(s)	17, 828, 1072, 1415, 1792, 1806
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	3 cut(s)	320, 651, 831
Bme18I	GGWCC	2 cut(s)	396, 1909
BmeT110I	CYCGRG	1 cut(s)	730
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	396, 1909
BmiI	GGNNCC	4 cut(s)	32, 367, 611, 1357
BmrFI	CCNGG	3 cut(s)	320, 651, 831
BmsI	GCATC	3 cut(s)	151, 1114, 1929
BpiI	GAAGAC	2 cut(s)	376, 1077
BpmI	CTGGAG	1 cut(s)	302
BpuEI	CTTGAG	3 cut(s)	672, 1075, 1687
BsaBI	GATNNNNATC	1 cut(s)	1919
BsaHI	GRCGYC	1 cut(s)	893
BsaJI	CCNNGG	3 cut(s)	369, 1160, 1673
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 1080, 1277
Bse1I	ACTGG	3 cut(s)	574, 643, 1942
Bse3DI	GCAATG	1 cut(s)	1290
Bse8I	GATNNNNATC	1 cut(s)	1919
BseBI	CCWGG	3 cut(s)	320, 651, 831
BseDI	CCNNGG	3 cut(s)	369, 1160, 1673
BseGI	GGATG	7 cut(s)	166, 772, 1105, 1177, 1222, 1628, 1960
BseJI	GATNNNNATC	1 cut(s)	1919
BseLI	CCNNNNNNNGG	3 cut(s)	157, 1080, 1277
BseMI	GCAATG	1 cut(s)	1290
BseMII	CTCAG	3 cut(s)	107, 128, 672
BseNI	ACTGG	3 cut(s)	574, 643, 1942
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	5 cut(s)	27, 813, 1057, 1425, 1791
BsgI	GTGCAG	1 cut(s)	1790
Bsh1236I	CGCG	2 cut(s)	523, 1855
Bsh1285I	CGRYCG	1 cut(s)	1859
BshFI	GGCC	4 cut(s)	98, 884, 1096, 1512
BshNI	GGYRCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	1859
BsiHKAI	GWGCWC	2 cut(s)	577, 1933
BsiHKCI	CYCGRG	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	506, 1892
BslI	CCNNNNNNNGG	3 cut(s)	157, 1080, 1277
BsmAI	GTCTC	5 cut(s)	533, 677, 922, 1326, 1657
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	2 cut(s)	506, 1892
BsnI	GGCC	4 cut(s)	98, 884, 1096, 1512
BsoBI	CYCGRG	1 cut(s)	730
Bsp1286I	GDGCHC	5 cut(s)	260, 577, 1358, 1673, 1933
Bsp1407I	TGTACA	1 cut(s)	988
Bsp143I	GATC	5 cut(s)	250, 313, 352, 641, 1578
BspACI	CCGC	4 cut(s)	349, 394, 1790, 1855
BspANI	GGCC	4 cut(s)	98, 884, 1096, 1512
BspCNI	CTCAG	3 cut(s)	106, 127, 673
BspFNI	CGCG	2 cut(s)	523, 1855
BspLI	GGNNCC	4 cut(s)	32, 367, 611, 1357
BspPI	GGATC	2 cut(s)	360, 649
BspT107I	GGYRCC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	1290
BsrGI	TGTACA	1 cut(s)	988
BsrI	ACTGG	3 cut(s)	574, 643, 1942
BssECI	CCNNGG	3 cut(s)	369, 1160, 1673
BssMI	GATC	5 cut(s)	250, 313, 352, 641, 1578
BssNI	GRCGYC	1 cut(s)	893
BssT1I	CCWWGG	3 cut(s)	369, 1160, 1673
Bst2UI	CCWGG	3 cut(s)	320, 651, 831
Bst4CI	ACNGT	4 cut(s)	497, 609, 1101, 1683
Bst6I	CTCTTC	1 cut(s)	1464
BstACI	GRCGYC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	988
BstC8I	GCNNGC	3 cut(s)	376, 509, 1723
BstDEI	CTNAG	5 cut(s)	19, 93, 114, 681, 1949
BstF5I	GGATG	7 cut(s)	166, 772, 1105, 1177, 1222, 1628, 1960
BstFNI	CGCG	2 cut(s)	523, 1855
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	253, 316, 355, 644, 1581
BstMAI	GTCTC	5 cut(s)	533, 677, 922, 1326, 1657
BstMBI	GATC	5 cut(s)	250, 313, 352, 641, 1578
BstMCI	CGRYCG	1 cut(s)	1859
BstMWI	GCNNNNNNNGC	3 cut(s)	1102, 1309, 1595
BstNI	CCWGG	3 cut(s)	320, 651, 831
BstNSI	RCATGY	3 cut(s)	511, 1134, 1387
BstSCI	CCNGG	3 cut(s)	318, 649, 829
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	2 cut(s)	523, 1855
BstV1I	GCAGC	5 cut(s)	27, 813, 1057, 1425, 1791
BstV2I	GAAGAC	2 cut(s)	376, 1077
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	1493
BsuRI	GGCC	4 cut(s)	98, 884, 1096, 1512
BtgZI	GCGATG	1 cut(s)	1917
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	7 cut(s)	166, 772, 1105, 1177, 1222, 1628, 1960
BtsI	GCAGTG	1 cut(s)	1540
BtsIMutI	CAGTG	3 cut(s)	1097, 1540, 1897
Cac8I	GCNNGC	3 cut(s)	376, 509, 1723
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	396, 1909
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	4 cut(s)	31, 468, 904, 989
CviQI	GTAC	4 cut(s)	31, 468, 904, 989
DdeI	CTNAG	5 cut(s)	19, 93, 114, 681, 1949
DpnI	GATC	5 cut(s)	252, 315, 354, 643, 1580
DpnII	GATC	5 cut(s)	250, 313, 352, 641, 1578
EaeI	YGGCCR	2 cut(s)	882, 1094
Eam1104I	CTCTTC	1 cut(s)	1464
EarI	CTCTTC	1 cut(s)	1464
Eco130I	CCWWGG	3 cut(s)	369, 1160, 1673
Eco147I	AGGCCT	1 cut(s)	1512
Eco24I	GRGCYC	2 cut(s)	1358, 1673
Eco47I	GGWCC	2 cut(s)	396, 1909
Eco88I	CYCGRG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	1909
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	318, 649, 829
EcoT14I	CCWWGG	3 cut(s)	369, 1160, 1673
EcoT22I	ATGCAT	1 cut(s)	1277
EcoT38I	GRGCYC	2 cut(s)	1358, 1673
ErhI	CCWWGG	3 cut(s)	369, 1160, 1673
Esp3I	CGTCTC	1 cut(s)	922
FalI	AAGNNNNNCTT	4 cut(s)	574, 606, 1343, 1375
FaqI	GGGAC	2 cut(s)	506, 1892
FauI	CCCGC	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	785
Fnu4HI	GCNGC	6 cut(s)	16, 827, 1071, 1414, 1791, 1805
FokI	GGATG	7 cut(s)	173, 759, 1092, 1164, 1229, 1615, 1967
FriOI	GRGCYC	2 cut(s)	1358, 1673
Fsp4HI	GCNGC	6 cut(s)	16, 827, 1071, 1414, 1791, 1805
FspBI	CTAG	5 cut(s)	599, 981, 1419, 1494, 1698
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	6 cut(s)	16, 827, 1071, 1414, 1791, 1805
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	4 cut(s)	98, 884, 1096, 1512
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	893
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	2 cut(s)	226, 1765
HindII	GTYRAC	2 cut(s)	226, 1765
HindIII	AAGCTT	4 cut(s)	24, 299, 1151, 1331
HinfI	GANTC	5 cut(s)	203, 288, 685, 1403, 1915
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	4 cut(s)	771, 1232, 1380, 1559
Hpy166II	GTNNAC	5 cut(s)	90, 226, 989, 991, 1765
Hpy188I	TCNGA	5 cut(s)	117, 519, 1044, 1208, 1348
Hpy8I	GTNNAC	5 cut(s)	90, 226, 989, 991, 1765
HpyAV	CCTTC	4 cut(s)	483, 653, 786, 1869
HpyCH4III	ACNGT	4 cut(s)	497, 609, 1101, 1683
HpyCH4IV	ACGT	3 cut(s)	186, 893, 1527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1102, 1309, 1595
HpyF3I	CTNAG	5 cut(s)	19, 93, 114, 681, 1949
HpySE526I	ACGT	3 cut(s)	186, 893, 1527
Hsp92I	GRCGYC	1 cut(s)	893
HspAI	GCGC	1 cut(s)	523
KpnI	GGTACC	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	250, 313, 352, 641, 1578
LmnI	GCTCC	2 cut(s)	1280, 1361
Lsp1109I	GCAGC	5 cut(s)	27, 813, 1057, 1425, 1791
LweI	GCATC	3 cut(s)	151, 1114, 1929
MaeI	CTAG	5 cut(s)	599, 981, 1419, 1494, 1698
MaeII	ACGT	3 cut(s)	186, 893, 1527
MaeIII	GTNAC	5 cut(s)	200, 763, 1231, 1365, 1386
MalI	GATC	5 cut(s)	252, 315, 354, 643, 1580
MboI	GATC	5 cut(s)	250, 313, 352, 641, 1578
MboII	GAAGA	9 cut(s)	376, 766, 813, 1077, 1264, 1448, 1451, 1556, 1660
MfeI	CAATTG	1 cut(s)	1448
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	5 cut(s)	260, 577, 1358, 1673, 1933
MlsI	TGGCCA	2 cut(s)	884, 1096
MluNI	TGGCCA	2 cut(s)	884, 1096
MlyI	GAGTC	4 cut(s)	197, 282, 679, 1397
Mox20I	TGGCCA	2 cut(s)	884, 1096
Mph1103I	ATGCAT	1 cut(s)	1277
MroXI	GAANNNNTTC	2 cut(s)	1004, 1049
MscI	TGGCCA	2 cut(s)	884, 1096
MseI	TTAA	3 cut(s)	36, 453, 1776
MslI	CAYNNNNRTG	2 cut(s)	784, 1035
Msp20I	TGGCCA	2 cut(s)	884, 1096
MspA1I	CMGCKG	1 cut(s)	1760
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	320, 651, 831
MunI	CAATTG	1 cut(s)	1448
MvaI	CCWGG	3 cut(s)	320, 651, 831
MvnI	CGCG	2 cut(s)	523, 1855
MwoI	GCNNNNNNNGC	3 cut(s)	1102, 1309, 1595
NdeI	CATATG	1 cut(s)	785
NdeII	GATC	5 cut(s)	250, 313, 352, 641, 1578
NlaIV	GGNNCC	4 cut(s)	32, 367, 611, 1357
NmuCI	GTSAC	2 cut(s)	200, 1386
NsiI	ATGCAT	1 cut(s)	1277
NspI	RCATGY	3 cut(s)	511, 1134, 1387
PaeI	GCATGC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	1512
PciI	ACATGT	2 cut(s)	1130, 1383
PdmI	GAANNNNTTC	2 cut(s)	1004, 1049
PfeI	GAWTC	1 cut(s)	1915
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	17, 828, 1072, 1415, 1792, 1806
PleI	GAGTC	4 cut(s)	197, 282, 679, 1397
PpsI	GAGTC	4 cut(s)	197, 282, 679, 1397
PpuMI	RGGWCCY	1 cut(s)	1909
PscI	ACATGT	2 cut(s)	1130, 1383
PsiI	TTATAA	1 cut(s)	924
Psp5II	RGGWCCY	1 cut(s)	1909
Psp6I	CCWGG	3 cut(s)	318, 649, 829
PspGI	CCWGG	3 cut(s)	318, 649, 829
PspN4I	GGNNCC	4 cut(s)	32, 367, 611, 1357
PspPI	GGNCC	2 cut(s)	396, 1909
PspPPI	RGGWCCY	1 cut(s)	1909
PspXI	VCTCGAGB	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	1760
RsaI	GTAC	4 cut(s)	32, 469, 905, 990
RsaNI	GTAC	4 cut(s)	31, 468, 904, 989
RseI	CAYNNNNRTG	2 cut(s)	784, 1035
SaqAI	TTAA	3 cut(s)	36, 453, 1776
SatI	GCNGC	6 cut(s)	16, 827, 1071, 1414, 1791, 1805
Sau3AI	GATC	5 cut(s)	250, 313, 352, 641, 1578
Sau96I	GGNCC	2 cut(s)	396, 1909
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	4 cut(s)	197, 282, 679, 1397
ScrFI	CCNGG	3 cut(s)	320, 651, 831
SduI	GDGCHC	5 cut(s)	260, 577, 1358, 1673, 1933
SfaNI	GCATC	3 cut(s)	151, 1114, 1929
Sfr274I	CTCGAG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	396, 1909
SlaI	CTCGAG	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	784, 1035
SmlI	CTYRAG	4 cut(s)	687, 730, 1054, 1702
SmoI	CTYRAG	4 cut(s)	687, 730, 1054, 1702
SpeI	ACTAGT	1 cut(s)	980
SphI	GCATGC	1 cut(s)	511
SseBI	AGGCCT	1 cut(s)	1512
SsiI	CCGC	4 cut(s)	349, 394, 1790, 1855
SspMI	CTAG	5 cut(s)	599, 981, 1419, 1494, 1698
StuI	AGGCCT	1 cut(s)	1512
StyD4I	CCNGG	3 cut(s)	318, 649, 829
StyI	CCWWGG	3 cut(s)	369, 1160, 1673
TaaI	ACNGT	4 cut(s)	497, 609, 1101, 1683
TaiI	ACGT	3 cut(s)	189, 896, 1530
TaqI	TCGA	8 cut(s)	304, 312, 417, 459, 731, 1033, 1371, 1443
TatI	WGTACW	3 cut(s)	467, 903, 988
TauI	GCSGC	1 cut(s)	1793
TfiI	GAWTC	1 cut(s)	1915
Tru1I	TTAA	3 cut(s)	36, 453, 1776
Tru9I	TTAA	3 cut(s)	36, 453, 1776
TscAI	CASTG	3 cut(s)	1104, 1540, 1897
TseFI	GTSAC	2 cut(s)	200, 1386
TseI	GCWGC	5 cut(s)	15, 826, 1070, 1413, 1804
Tsp45I	GTSAC	2 cut(s)	200, 1386
TspDTI	ATGAA	9 cut(s)	132, 296, 392, 714, 924, 1257, 1451, 1617, 1883
TspGWI	ACGGA	2 cut(s)	884, 1314
TspRI	CASTG	3 cut(s)	1104, 1540, 1897
VpaK11BI	GGWCC	2 cut(s)	396, 1909
XapI	RAATTY	6 cut(s)	239, 341, 546, 1045, 1468, 1592
XceI	RCATGY	3 cut(s)	511, 1134, 1387
XhoI	CTCGAG	1 cut(s)	730
XmnI	GAANNNNTTC	2 cut(s)	1004, 1049
XspI	CTAG	5 cut(s)	599, 981, 1419, 1494, 1698
ZraI	GACGTC	1 cut(s)	894
ZrmI	AGTACT	1 cut(s)	905
Zsp2I	ATGCAT	1 cut(s)	1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.