Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

19000441 .. 19007611

Gene Structure 7171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG191900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGTCAAGTGACTCATCTCATATTCATGCAGTTGACTTATTTCTGGAATTCCATAGTGACCTGGGCACAGAAAGTGTTGTGGATTTGATGAATGGACTCAATGCAAAGCTTCGAGTTGTCGATCTCCAGGATTTGTCTTTGGGGAAAGAATTTCTGCGGGATCTTTGTCAGGGTTCCTTGGCTTGCCAAGTCTTCAACTTGCGGTCCATTCATATCCAGAAACTCGACATGATTGGAAACTTTTTGCGACTACACACCCTTAATCTCGATTTTTGTACTTCACTCGGTAGTTTGCGAAGGGACTGTTTTTCTTGCATGCCAAATCTGATGCGCCTCTCAATGTGTGAGACAAGAATTTCCAATCTCCTGACCACGACTGGTGCTCTGTCAAGACTTCCTTGTTTGCTAGAACTACGTTTCCAAAGCTGTTTATGTTGCAAGGAAACTGGATCATGTCCTGGTTTAGAAGGGCAACAGAAATTGCAGACTGAGACTCAAGAAAAAGATGAAACCCTTGTAAGTGAGGGTAAGAAAGCCTCGAGGAATGTGAGTATTACATTGAAGAACTTTGTAACTCATCATCCTTCACCCATATGCTTTGAGAAGCATTATCGGGAGTATATCATATCTTCGCTGCCTGGTCTGGAAGTTTTAGATAATTTTCCTATTAGAATGACGGAGAGGGAATTGGCCAAGATGACGTCTGCAAAGTACTATGAATACTTACCTTATAAAAGACGGCACAAAGAAAGTGTTGTTAGTGTTTTGAATAAGCGTGAAATGGGAACTAGTGGTGTACACTTCCAGAAACCATTCAAGCCAAAACAATTATATCCTCATCGAAATGGTCAGAATTTTTTCTTGAGGTCGCTGTGTGCTGCCAAACTTGGGTCTTCAACTTGGCCACTGTTGCATCCACTTTCCAATTTCAACCACACATGTAAAGCAGAAAACAAGAAGCTTCGTCCAAGGCAGTTTGAGTATCATCCATCAAACCCAAGTCTTATGGTTTTCGGAACTCTGGATGGTGAAGTAGTGGTTACTAACCATGAAAACGGGAAGATGGTTGGTTATATTCCTTGCATAGGAGCAATGAGTAGTGTCTTGGGGCTTTGTTGGCTCAACAAGTCTCCGTCCAAGCTTGTTGCTGGTTCAGATAAGGGCTCCTTGAAGTTACTCGACATCAACAACATGTCACCAGAAGTTGCAGACTCTTGTTGCAGCTCTAGTGGTGCAACTTTTGAAGATTTCGAGCAATTGACTTCTCTTCATGTAAATTCAACTGATGACCAGCTTCTCGCTAGTGGATACTCCAAAGGCCTTGCTCTGTATGACATTGGCAGTGGAAAACGTTTAGAGTTGTTCAGTAATCTTCACCGAGAACCGATCAATGTTGCCAAATTTGCACACCATTCCCCTTATATGTTTGCTACTTCATCCTTTGACCATGATGTGAAGATGTGGGATTTGAGACAGAGCCCAAGGAAACCGTGCTATACAGCTTCTAGCTCAAGAGGAAATGTGATGGCTTGCTTTTCTCCTGATGACCATTATTTGCTTGTTTCAGCTGTTGACAACGAGGTTAAGCAACTTTTGGCGGCAGATGGGAGGCTGCACATGAGTTTTGAGATAGCTTCAACAGGAAGTTCTCATAACTATACGCGGTCGTATTACATGAATGGAAGGGACTATATCATCAGTGGAAGTTGCGATGAGGACGTGATTCGCATCTGCTGTGCTCAAACTGGAAAGCGACTTAGGGATGTTTATTTGGAGGATGAATCAGGAAATTCAATATTCGTGCAGTCCTTAAGGGGCGATCCTTTCAGGCATTTTAACATGAGTATATTAGCCACTGCTACACGCCCAAGCTTCAAGTGGGAGATTATCAAGGTCAACTTACTTGCATCGAGTGACTCTGCAGAAGAACATTGTTATGGCCAGTGTTTGCAGCCTTCTTGCTGTCTGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

658

Amino Acids

73.77

Weight (kDa)

7.5

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	5 - 150	6.4e-34	DWD hypersensitive to UV-B 1, N-terminal
DHU1_N	PF20919	179 - 233	3.1e-09	DWD hypersensitive to UV-B 1, N-terminal
WD40_Prp19	PF24814	326 - 529	2.5e-10	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	339 - 575	2.6e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	339 - 529	4.9e-09	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	340 - 531	1.9e-08	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	420 - 587	1.8e-10	THOC3 beta-propeller domain
WDR55	PF24796	426 - 537	5.1e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AatII	GACGTC	1 cut(s)	704
AbsI	CCTCGAGG	1 cut(s)	538
AccII	CGCG	1 cut(s)	1663
AciI	CCGC	4 cut(s)	157, 202, 1598, 1663
AclI	AACGTT	1 cut(s)	1351
AclWI	GGATC	3 cut(s)	168, 457, 1814
AcoI	YGGCCR	3 cut(s)	690, 902, 1939
AcsI	RAATTY	7 cut(s)	47, 149, 354, 853, 1276, 1400, 1789
AcyI	GRCGYC	1 cut(s)	701
AfaI	GTAC	3 cut(s)	277, 713, 798
AfiI	CCNNNNNNNGG	2 cut(s)	888, 1085
AflII	CTTAAG	1 cut(s)	1810
AflIII	ACRYGT	2 cut(s)	938, 1191
AhlI	ACTAGT	1 cut(s)	788
AjiI	CACGTC	1 cut(s)	1720
AjnI	CCWGG	4 cut(s)	60, 126, 457, 637
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
Alw21I	GWGCWC	2 cut(s)	385, 1741
Alw26I	GTCTC	4 cut(s)	341, 485, 1134, 1465
AlwI	GGATC	3 cut(s)	168, 457, 1814
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	4 cut(s)	690, 902, 1318, 1939
ApeKI	GCWGC	5 cut(s)	634, 878, 1221, 1612, 1951
ApoI	RAATTY	7 cut(s)	47, 149, 354, 853, 1276, 1400, 1789
Asp700I	GAANNNNTTC	2 cut(s)	812, 857
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	4 cut(s)	579, 1040, 1188, 1367
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	3 cut(s)	692, 904, 1941
BanII	GRGCYC	2 cut(s)	1166, 1481
BbsI	GAAGAC	2 cut(s)	184, 885
Bbv12I	GWGCWC	2 cut(s)	385, 1741
BbvI	GCAGC	5 cut(s)	621, 865, 1233, 1599, 1963
BccI	CCATC	5 cut(s)	997, 1019, 1057, 1519, 1598
BceAI	ACGGC	1 cut(s)	755
BciT130I	CCWGG	4 cut(s)	62, 128, 459, 639
BciVI	GTATCC	1 cut(s)	1301
BcoDI	GTCTC	4 cut(s)	341, 485, 1134, 1465
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	5 cut(s)	407, 789, 1227, 1302, 1506
BfmI	CTRYAG	1 cut(s)	1920
BfrI	CTTAAG	1 cut(s)	1810
BfuI	GTATCC	1 cut(s)	1301
BisI	GCNGC	6 cut(s)	635, 879, 1222, 1599, 1613, 1952
BlsI	GCNGC	6 cut(s)	636, 880, 1223, 1600, 1614, 1953
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	4 cut(s)	62, 128, 459, 639
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	1720
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	175, 1165
BmrFI	CCNGG	4 cut(s)	62, 128, 459, 639
BmsI	GCATC	4 cut(s)	318, 922, 1737, 1916
BpiI	GAAGAC	2 cut(s)	184, 885
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	3 cut(s)	480, 883, 1495
BsaBI	GATNNNNATC	1 cut(s)	1727
BsaHI	GRCGYC	1 cut(s)	701
BsaJI	CCNNGG	4 cut(s)	61, 177, 968, 1481
Bsc4I	CCNNNNNNNGG	2 cut(s)	888, 1085
Bse1I	ACTGG	4 cut(s)	382, 451, 1750, 1942
Bse3DI	GCAATG	1 cut(s)	1098
Bse8I	GATNNNNATC	1 cut(s)	1727
BseBI	CCWGG	4 cut(s)	62, 128, 459, 639
BseDI	CCNNGG	4 cut(s)	61, 177, 968, 1481
BseGI	GGATG	7 cut(s)	580, 913, 985, 1030, 1436, 1768, 1783
BseJI	GATNNNNATC	1 cut(s)	1727
BseLI	CCNNNNNNNGG	2 cut(s)	888, 1085
BseMI	GCAATG	1 cut(s)	1098
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	382, 451, 1750, 1942
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	621, 865, 1233, 1599, 1963
BsgI	GTGCAG	2 cut(s)	1598, 1823
Bsh1236I	CGCG	1 cut(s)	1663
Bsh1285I	CGRYCG	1 cut(s)	1667
BshFI	GGCC	4 cut(s)	692, 904, 1320, 1941
BsiEI	CGRYCG	1 cut(s)	1667
BsiHKAI	GWGCWC	2 cut(s)	385, 1741
BsiHKCI	CYCGRG	1 cut(s)	538
BslFI	GGGAC	2 cut(s)	314, 1700
BslI	CCNNNNNNNGG	2 cut(s)	888, 1085
BsmAI	GTCTC	4 cut(s)	341, 485, 1134, 1465
BsmFI	GGGAC	2 cut(s)	314, 1700
BsnI	GGCC	4 cut(s)	692, 904, 1320, 1941
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	5 cut(s)	68, 385, 1166, 1481, 1741
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	5 cut(s)	121, 160, 449, 1386, 1819
BspACI	CCGC	4 cut(s)	157, 202, 1598, 1663
BspANI	GGCC	4 cut(s)	692, 904, 1320, 1941
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	1663
BspLI	GGNNCC	2 cut(s)	175, 1165
BspMAI	CTGCAG	1 cut(s)	1924
BspPI	GGATC	3 cut(s)	168, 457, 1814
BspTI	CTTAAG	1 cut(s)	1810
BsrDI	GCAATG	1 cut(s)	1098
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	4 cut(s)	382, 451, 1750, 1942
BssECI	CCNNGG	4 cut(s)	61, 177, 968, 1481
BssMI	GATC	5 cut(s)	121, 160, 449, 1386, 1819
BssNI	GRCGYC	1 cut(s)	701
BssT1I	CCWWGG	3 cut(s)	177, 968, 1481
Bst2UI	CCWGG	4 cut(s)	62, 128, 459, 639
Bst4CI	ACNGT	3 cut(s)	305, 909, 1491
Bst6I	CTCTTC	1 cut(s)	1272
BstACI	GRCGYC	1 cut(s)	701
BstAFI	CTTAAG	1 cut(s)	1810
BstAUI	TGTACA	1 cut(s)	796
BstC8I	GCNNGC	3 cut(s)	184, 317, 1531
BstDEI	CTNAG	2 cut(s)	489, 1757
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	7 cut(s)	580, 913, 985, 1030, 1436, 1768, 1783
BstFNI	CGCG	1 cut(s)	1663
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	5 cut(s)	124, 163, 452, 1389, 1822
BstMAI	GTCTC	4 cut(s)	341, 485, 1134, 1465
BstMBI	GATC	5 cut(s)	121, 160, 449, 1386, 1819
BstMCI	CGRYCG	1 cut(s)	1667
BstMWI	GCNNNNNNNGC	3 cut(s)	910, 1117, 1403
BstNI	CCWGG	4 cut(s)	62, 128, 459, 639
BstNSI	RCATGY	3 cut(s)	319, 942, 1195
BstSCI	CCNGG	4 cut(s)	60, 126, 457, 637
BstSFI	CTRYAG	1 cut(s)	1920
BstSLI	GKGCMC	1 cut(s)	68
BstUI	CGCG	1 cut(s)	1663
BstV1I	GCAGC	5 cut(s)	621, 865, 1233, 1599, 1963
BstV2I	GAAGAC	2 cut(s)	184, 885
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	1301
BsuRI	GGCC	4 cut(s)	692, 904, 1320, 1941
BtgZI	GCGATG	1 cut(s)	1725
BtrI	CACGTC	1 cut(s)	1720
BtsCI	GGATG	7 cut(s)	580, 913, 985, 1030, 1436, 1768, 1783
BtsI	GCAGTG	2 cut(s)	1348, 1854
BtsIMutI	CAGTG	5 cut(s)	905, 1348, 1705, 1854, 1949
Cac8I	GCNNGC	3 cut(s)	184, 317, 1531
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	276, 712, 797
CviQI	GTAC	3 cut(s)	276, 712, 797
DdeI	CTNAG	2 cut(s)	489, 1757
DpnI	GATC	5 cut(s)	123, 162, 451, 1388, 1821
DpnII	GATC	5 cut(s)	121, 160, 449, 1386, 1819
EaeI	YGGCCR	3 cut(s)	690, 902, 1939
Eam1104I	CTCTTC	1 cut(s)	1272
EarI	CTCTTC	1 cut(s)	1272
Eco130I	CCWWGG	3 cut(s)	177, 968, 1481
Eco147I	AGGCCT	1 cut(s)	1320
Eco24I	GRGCYC	2 cut(s)	1166, 1481
Eco47I	GGWCC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	4 cut(s)	60, 126, 457, 637
EcoT14I	CCWWGG	3 cut(s)	177, 968, 1481
EcoT38I	GRGCYC	2 cut(s)	1166, 1481
ErhI	CCWWGG	3 cut(s)	177, 968, 1481
FalI	AAGNNNNNCTT	6 cut(s)	382, 414, 1151, 1183, 1883, 1915
FaqI	GGGAC	2 cut(s)	314, 1700
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	593
Fnu4HI	GCNGC	6 cut(s)	635, 879, 1222, 1599, 1613, 1952
FokI	GGATG	7 cut(s)	567, 900, 972, 1037, 1423, 1775, 1790
FriOI	GRGCYC	2 cut(s)	1166, 1481
Fsp4HI	GCNGC	6 cut(s)	635, 879, 1222, 1599, 1613, 1952
FspBI	CTAG	5 cut(s)	407, 789, 1227, 1302, 1506
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	6 cut(s)	635, 879, 1222, 1599, 1613, 1952
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	692, 904, 1320, 1941
HhaI	GCGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	701
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	3 cut(s)	34, 1573, 1897
HindII	GTYRAC	3 cut(s)	34, 1573, 1897
HindIII	AAGCTT	4 cut(s)	107, 959, 1139, 1870
HinfI	GANTC	7 cut(s)	11, 96, 493, 1211, 1723, 1781, 1916
HphI	GGTGA	4 cut(s)	579, 1040, 1188, 1367
Hpy166II	GTNNAC	5 cut(s)	34, 797, 799, 1573, 1897
Hpy188I	TCNGA	4 cut(s)	327, 852, 1016, 1156
Hpy8I	GTNNAC	5 cut(s)	34, 797, 799, 1573, 1897
HpyAV	CCTTC	5 cut(s)	291, 461, 594, 1677, 1965
HpyCH4III	ACNGT	3 cut(s)	305, 909, 1491
HpyCH4IV	ACGT	4 cut(s)	415, 701, 1351, 1719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	910, 1117, 1403
HpyF3I	CTNAG	2 cut(s)	489, 1757
HpySE526I	ACGT	4 cut(s)	415, 701, 1351, 1719
Hsp92I	GRCGYC	1 cut(s)	701
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	121, 160, 449, 1386, 1819
LmnI	GCTCC	2 cut(s)	1088, 1169
Lsp1109I	GCAGC	5 cut(s)	621, 865, 1233, 1599, 1963
LweI	GCATC	4 cut(s)	318, 922, 1737, 1916
MaeI	CTAG	5 cut(s)	407, 789, 1227, 1302, 1506
MaeII	ACGT	4 cut(s)	415, 701, 1351, 1719
MaeIII	GTNAC	7 cut(s)	8, 56, 571, 1039, 1173, 1194, 1913
MalI	GATC	5 cut(s)	123, 162, 451, 1388, 1821
MboI	GATC	5 cut(s)	121, 160, 449, 1386, 1819
MfeI	CAATTG	1 cut(s)	1256
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	5 cut(s)	68, 385, 1166, 1481, 1741
MlsI	TGGCCA	3 cut(s)	692, 904, 1941
MluNI	TGGCCA	3 cut(s)	692, 904, 1941
MlyI	GAGTC	5 cut(s)	5, 90, 487, 1205, 1910
Mox20I	TGGCCA	3 cut(s)	692, 904, 1941
MroXI	GAANNNNTTC	2 cut(s)	812, 857
MscI	TGGCCA	3 cut(s)	692, 904, 1941
MseI	TTAA	4 cut(s)	261, 1584, 1811, 1836
MslI	CAYNNNNRTG	4 cut(s)	24, 592, 843, 1935
Msp20I	TGGCCA	3 cut(s)	692, 904, 1941
MspA1I	CMGCKG	1 cut(s)	1568
MspCI	CTTAAG	1 cut(s)	1810
MspR9I	CCNGG	4 cut(s)	62, 128, 459, 639
MunI	CAATTG	1 cut(s)	1256
MvaI	CCWGG	4 cut(s)	62, 128, 459, 639
MvnI	CGCG	1 cut(s)	1663
MwoI	GCNNNNNNNGC	3 cut(s)	910, 1117, 1403
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	5 cut(s)	121, 160, 449, 1386, 1819
NlaIV	GGNNCC	2 cut(s)	175, 1165
NmuCI	GTSAC	4 cut(s)	8, 56, 1194, 1913
NspI	RCATGY	3 cut(s)	319, 942, 1195
PaeI	GCATGC	1 cut(s)	319
PaeR7I	CTCGAG	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	1320
PciI	ACATGT	2 cut(s)	938, 1191
PdmI	GAANNNNTTC	2 cut(s)	812, 857
PfeI	GAWTC	2 cut(s)	1723, 1781
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	6 cut(s)	636, 880, 1223, 1600, 1614, 1953
PleI	GAGTC	5 cut(s)	5, 90, 487, 1205, 1910
PpsI	GAGTC	5 cut(s)	5, 90, 487, 1205, 1910
PscI	ACATGT	2 cut(s)	938, 1191
PsiI	TTATAA	1 cut(s)	732
Psp1406I	AACGTT	1 cut(s)	1351
Psp6I	CCWGG	4 cut(s)	60, 126, 457, 637
PspGI	CCWGG	4 cut(s)	60, 126, 457, 637
PspN4I	GGNNCC	2 cut(s)	175, 1165
PspPI	GGNCC	1 cut(s)	204
PspXI	VCTCGAGB	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	1924
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	1568
RsaI	GTAC	3 cut(s)	277, 713, 798
RsaNI	GTAC	3 cut(s)	276, 712, 797
RseI	CAYNNNNRTG	4 cut(s)	24, 592, 843, 1935
SaqAI	TTAA	4 cut(s)	261, 1584, 1811, 1836
SatI	GCNGC	6 cut(s)	635, 879, 1222, 1599, 1613, 1952
Sau3AI	GATC	5 cut(s)	121, 160, 449, 1386, 1819
Sau96I	GGNCC	1 cut(s)	204
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	5 cut(s)	5, 90, 487, 1205, 1910
ScrFI	CCNGG	4 cut(s)	62, 128, 459, 639
SduI	GDGCHC	5 cut(s)	68, 385, 1166, 1481, 1741
SfaNI	GCATC	4 cut(s)	318, 922, 1737, 1916
SfcI	CTRYAG	1 cut(s)	1920
Sfr274I	CTCGAG	1 cut(s)	538
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	538
SmiMI	CAYNNNNRTG	4 cut(s)	24, 592, 843, 1935
SmlI	CTYRAG	5 cut(s)	495, 538, 862, 1510, 1810
SmoI	CTYRAG	5 cut(s)	495, 538, 862, 1510, 1810
SpeI	ACTAGT	1 cut(s)	788
SphI	GCATGC	1 cut(s)	319
SseBI	AGGCCT	1 cut(s)	1320
SsiI	CCGC	4 cut(s)	157, 202, 1598, 1663
SspI	AATATT	1 cut(s)	1797
SspMI	CTAG	5 cut(s)	407, 789, 1227, 1302, 1506
StuI	AGGCCT	1 cut(s)	1320
StyD4I	CCNGG	4 cut(s)	60, 126, 457, 637
StyI	CCWWGG	3 cut(s)	177, 968, 1481
TaaI	ACNGT	3 cut(s)	305, 909, 1491
TaiI	ACGT	4 cut(s)	418, 704, 1354, 1722
TaqI	TCGA	9 cut(s)	112, 120, 225, 267, 539, 841, 1179, 1251, 1910
TatI	WGTACW	3 cut(s)	275, 711, 796
TauI	GCSGC	1 cut(s)	1601
TfiI	GAWTC	2 cut(s)	1723, 1781
Tru1I	TTAA	4 cut(s)	261, 1584, 1811, 1836
Tru9I	TTAA	4 cut(s)	261, 1584, 1811, 1836
TscAI	CASTG	5 cut(s)	912, 1348, 1705, 1861, 1949
TseFI	GTSAC	4 cut(s)	8, 56, 1194, 1913
TseI	GCWGC	5 cut(s)	634, 878, 1221, 1612, 1951
Tsp45I	GTSAC	4 cut(s)	8, 56, 1194, 1913
TspGWI	ACGGA	2 cut(s)	692, 1122
TspRI	CASTG	5 cut(s)	912, 1348, 1705, 1861, 1949
Vha464I	CTTAAG	1 cut(s)	1810
VpaK11BI	GGWCC	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	7 cut(s)	47, 149, 354, 853, 1276, 1400, 1789
XceI	RCATGY	3 cut(s)	319, 942, 1195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1875
XhoI	CTCGAG	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	812, 857
XspI	CTAG	5 cut(s)	407, 789, 1227, 1302, 1506
ZraI	GACGTC	1 cut(s)	702
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.