Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

12403386 .. 12404296

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGATTACTTACCCGAAGACTTGATAGTTGGAATCATGCAGAGGTTGCCGATCAAATCCCTAGTCCGGTTCACCTGCGTTTCGAAACGCTGGCATTTCATCATATTATCCGACCCAGAGTTCGCCAAGTCCCAATTCCAAATAGCTTCTCACCACCAAACCCTCCGTCATAGACTCCTCAATTCCGTCGACTCTGCATCTGAATCTGAATTCTACTCGCTAGACTTGGATGCGCCGCCGCCGCCGTTGGGAAACAATTCTTTGGTGCTGAGAGAGGTTAGGTGCCCATTCACGCAACATCAAGTGACAATATTGTGCTCCTGCAATGGCTTGATATTGGCAGCCCTTTTTGATGAAGAAAACAAAATGTATATCTGGAACCCATCAACTCAATTCTTTAAAAAACTTCCTGACCCAGCTGATACTTTGAGGAAGTTACTCTGCTTTGGTTTTGGCTATTTGTCGACCACCGATGACTACAAAGTTATTGCCAACTTTTCTGATGATTATTATGATGGTGAGGAGGTGGAGGTGGAGGTGGAGATGGAGAAAAAGGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

188

Amino Acids

21.6

Weight (kDa)

5.09

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 41	2.1e-07	F-box-like
F-box	PF00646	5 - 40	5.3e-09	F-box domain
FBA_3	PF08268	90 - 170	1.9e-07	F-box associated beta propeller domain
FBA_1	PF07734	97 - 179	3.5e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	192, 467
AciI	CCGC	4 cut(s)	5, 239, 242, 245
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	69, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	149, 422
AluI	AGCT	2 cut(s)	149, 422
Alw21I	GWGCWC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	6 cut(s)	51, 83, 107, 139, 154, 186
Asp700I	GAANNNNTTC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	67, 146, 533
AsuII	TTCGAA	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	3 cut(s)	394, 512, 541
BceAI	ACGGC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	65, 224
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	239, 242, 245, 345
BlsI	GCNGC	4 cut(s)	240, 243, 246, 346
BmiI	GGNNCC	2 cut(s)	287, 383
BmsI	GCATC	2 cut(s)	209, 223
BpiI	GAAGAC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 251
Bse3DI	GCAATG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	69, 251
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	170, 539
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	69, 251
BsmFI	GGGAC	1 cut(s)	118
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	290, 323
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	4 cut(s)	5, 239, 242, 245
BspCNI	CTCAG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	287, 383
BspMI	ACCTGC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	334
BssMI	GATC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 244
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	238
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	5 cut(s)	149, 333, 347, 422, 459
CviKI_1	RGCY	5 cut(s)	149, 333, 347, 422, 459
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DraI	TTTAAA	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	43
FaiI	YATR	5 cut(s)	41, 107, 174, 375, 516
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	39
FblI	GTMKAC	2 cut(s)	192, 467
Fnu4HI	GCNGC	4 cut(s)	239, 242, 245, 345
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	239, 242, 245, 345
FspBI	CTAG	2 cut(s)	65, 224
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	4 cut(s)	239, 242, 245, 345
GsaI	CCCAGC	1 cut(s)	422
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	2 cut(s)	193, 468
HindII	GTYRAC	2 cut(s)	193, 468
HinfI	GANTC	4 cut(s)	36, 177, 194, 206
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	3 cut(s)	67, 146, 533
Hpy166II	GTNNAC	3 cut(s)	75, 193, 468
Hpy188I	TCNGA	4 cut(s)	115, 205, 211, 505
Hpy188III	TCNNGA	2 cut(s)	379, 413
Hpy8I	GTNNAC	3 cut(s)	75, 193, 468
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	43, 200, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 244
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	8 cut(s)	79, 83, 91, 132, 337, 364, 426, 432
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	2 cut(s)	209, 223
MaeI	CTAG	2 cut(s)	65, 224
MaeIII	GTNAC	2 cut(s)	307, 438
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	32, 371
MhlI	GDGCHC	2 cut(s)	290, 323
MluCI	AATT	5 cut(s)	137, 184, 212, 259, 395
MlyI	GAGTC	2 cut(s)	171, 188
MmeI	TCCRAC	2 cut(s)	13, 138
MnlI	CCTC	9 cut(s)	39, 176, 191, 271, 426, 517, 520, 526, 532
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	49, 244
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	287, 383
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	36, 206
PkrI	GCNGC	4 cut(s)	240, 243, 246, 346
PleI	GAGTC	2 cut(s)	171, 188
PpsI	GAGTC	2 cut(s)	171, 188
PspFI	CCCAGC	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	287, 383
PvuII	CAGCTG	1 cut(s)	422
SalI	GTCGAC	2 cut(s)	191, 466
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	239, 242, 245, 345
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	171, 188
SduI	GDGCHC	2 cut(s)	290, 323
SetI	ASST	9 cut(s)	50, 80, 151, 282, 287, 424, 531, 537, 543
SfaNI	GCATC	2 cut(s)	209, 223
SfuI	TTCGAA	1 cut(s)	86
Sse9I	AATT	5 cut(s)	137, 184, 212, 259, 395
SsiI	CCGC	4 cut(s)	5, 239, 242, 245
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	65, 224
TaqI	TCGA	3 cut(s)	86, 192, 467
TasI	AATT	5 cut(s)	137, 184, 212, 259, 395
TauI	GCSGC	3 cut(s)	241, 244, 247
TfiI	GAWTC	2 cut(s)	36, 206
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	91, 372
TspGWI	ACGGA	2 cut(s)	158, 178
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	2 cut(s)	192, 467
XmnI	GAANNNNTTC	1 cut(s)	259
XspI	CTAG	2 cut(s)	65, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.