Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000269.1

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

11090 .. 14952

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000269.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

atgaccctgtacatgcccttattcaggtcatgcacaaccctacgaacactgacccaactccacgcccatctcctagtctcaggtctccacagagacccacaagcctccaccaagctcatcgagtcctactcccaactgggctccctccactcctcaacccagctctttcaaaccttccctaaccaagaccctttcatgtggggcgtcctcatcaaatgcttcatgtggaaccgccgcttccacgaggccatctcactctaccaagaaatgctgcaatgctcggtgggcatgagtaggttcatattcccttctgttttgagagcctgttcgggctgtggtgagctcagtgtgggtaggaaggtccatgggaggatagtgaaatgcgggttcgactcggatgctgtggtcgagaccgcattgctgggtttgtatggggagctggggcgtttggatgatgcaaggaaggtgtttgttgaaatgcatgtgagagacgccgtgtcgtggagttcggttatcttgtgttgcgtggagaatggagaggtgagtgaagggttggagatgttccgggggatggtgatggaaggaggtgttgtaccggattccgtcacaatgctcagtgtagctgaggcttgtgggaagttggggtggcggagaggagctaggtcagtgcatggttatgttgttagaagggagtttacaaaggacgagtctttggatacttctctgattacaatgtacagcaagtgtggcgacttgcagagtccggaaaggatttttcgtaatgttgctcatcgccacactgcatcttggaccgcgatgatttcctgctacaatcaagctgcttctttctcacaagcactagatgtttttgttaagatgcaggagtctggagtggagccgaatgctgtgacgttgatgtgcattctaatgtcttgtgttgggttaggcttgctcaaagaagggaagtctgttcatggatttgttattagaaaggctgtagaccctgaccttgattctttggggtcaccattgttagagttatatgctgaaattgggggactaagctattgtcagaaaattcttaatatgattggagtcagaaatgttgttccgtggaatacaattatttcaatttattgtcagaaaggtctgctgagagagtcattgctactctttgtgcagatgcaggcccaaggactaatgccagattcattcagcatgtcaagtgctctcgccgcttgtggaaagatgggtttattagagattgggcatcagatacatggtcatatagtcaaacgaggctatttggatgagtttgtgttgaactcactaattgatatgtactcaaaatgtgggtttgtagattcagcatacataatatttgacgagatgaaacatcctggtatcataacatggaattctatgatctcgggattttctcgtagtggtaactctgtcatggctatcagtcttttcgaccgaatttatctgaaccgtcttgagattgatgaagtcaccattttaagtgttattcaagcttgctccgaattaggttatttagaaaagggaaaatgggttcaccacaagctcataacttatggtgtgaggaaagacctctatattgatacagctctaactgacatgtatgctaagtgtggtgaccttcagtcagctcaaggtgtatttgatacgatggtagaaagaagcgttgtgtcttggagtgtcatgatcgctgggtatggaatacatggcaagatacgtgctgccgtatcactctttagtcaaatgttagaaactggaatcgaaccaaatgaggttacattcatgaatattctttcagcttgtagtcatgcaggtgctgttgaagaagggaggttatattttagatcaatgagggatttcggcattgagcccaatgcagaacattttgcatgtatagttgaccttctaagtcgagccggtgatctgaatggagcctatgatatcattaaatcaataccagtctctgttgatgccagcatatggggcgccctgctcaatggatgtcgaatccaccagaggatggacatgattaaaagcatcgaaaaagaccttttatatattaagacagatgacactggctactacaccttattttctaacatatatgctgaaggagggaactgggaggaatttgggaatgtgagattaatgatgaaaggtattggtctgaggaaggtccctggatacagtgtaattgagattgataagcgagtgtatagattcggagctggagatactcctcttcctcaaatgaaggaggtttacggaaagcatgaggtagagcccaattcagcagttctctcatggtttactcagaccaaagttcaaagttctcagaatgagaagtgtagcataacaatttcattagaccagctaaaggatgctgacattttgccactaaaggacgtgcttatgtcaagtgactcatctcatattcatgcagttgacttatttctggaattccatagtgacctgggcacagaaagtgttgtggatttgatgaatggactcaatgcaaagcttcgagttgtcgatctccaggatttgtctttggggaaagaatttctgcgggatctttgtcagggttccttggcttgccaagtcttcaacttgcggtccattcatatccagaaactcgacatgattggaaactttttgcgactacacacccttaatcttgatttttgtacttcactcggtagtttgcgaagggactgtttttcttgcatgccaaatctgacgcgcctctcaatgtgtgagacaagaatttccaatctcctgaccatgactggtgctctgtcaagacttccttgtttgcttgaactacggttccaaagctgtttatgttgcaaggaaactggatcatgtcctggtttagaagggcaacagaaattgcagactgagactcaagaaaaagatgaaacccttgtaagtgagggtaagaaagcctcgaggaatgtgagtattacattgaagaactttgtaactcatcatccttcacccatatgctttgagaaacattatcgggagtatatcatatcttcgctgcctgacgtctgttgtattcgatttaatgctttgatggtttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1044

Amino Acids

116.57

Weight (kDa)

6.22

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1844
AatII	GACGTC	1 cut(s)	3099
AbsI	CCTCGAGG	1 cut(s)	2992
Acc36I	ACCTGC	1 cut(s)	1844
AccB1I	GGYRCC	1 cut(s)	2027
AccB7I	CCANNNNNTGG	2 cut(s)	2022, 2062
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	2 cut(s)	815, 2785
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	9 cut(s)	232, 235, 384, 414, 649, 813, 1236, 2611, 2656
AclWI	GGATC	2 cut(s)	2622, 2911
AcsI	RAATTY	7 cut(s)	1077, 1417, 1482, 2171, 2501, 2603, 2808
AcuI	CTGAAG	2 cut(s)	1649, 2172
AcyI	GRCGYC	4 cut(s)	204, 492, 2028, 3096
AfaI	GTAC	5 cut(s)	11, 594, 737, 1343, 2731
AfiI	CCNNNNNNNGG	6 cut(s)	24, 501, 571, 2022, 2062, 2419
AflIII	ACRYGT	1 cut(s)	1641
AhdI	GACNNNNNGTC	2 cut(s)	496, 1666
AjiI	CACGTC	1 cut(s)	2449
AjnI	CCWGG	5 cut(s)	1399, 2221, 2514, 2580, 2911
AloI	GAACNNNNNNTCC	4 cut(s)	1560, 1592, 2856, 2888
Alw21I	GWGCWC	3 cut(s)	345, 1231, 2839
Alw26I	GTCTC	8 cut(s)	82, 87, 89, 404, 483, 2008, 2795, 2939
AlwI	GGATC	2 cut(s)	2622, 2911
AlwNI	CAGNNNCTG	2 cut(s)	1859, 2006
Ama87I	CYCGRG	2 cut(s)	1429, 2992
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	246, 1188
ApeKI	GCWGC	4 cut(s)	271, 839, 1763, 3088
ApoI	RAATTY	7 cut(s)	1077, 1417, 1482, 2171, 2501, 2603, 2808
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
AseI	ATTAAT	1 cut(s)	2189
AspLEI	GCGC	2 cut(s)	2030, 2787
AspS9I	GGNCC	5 cut(s)	361, 810, 1189, 2218, 2658
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	9 cut(s)	350, 553, 586, 1017, 1507, 1571, 1670, 1973, 3033
AvaI	CYCGRG	2 cut(s)	1429, 2992
AvaII	GGWCC	4 cut(s)	361, 810, 2218, 2658
BaeGI	GKGCMC	1 cut(s)	2522
BaeI	ACNNNNGTAYC	2 cut(s)	1680, 1713
BanI	GGYRCC	1 cut(s)	2027
BanII	GRGCYC	4 cut(s)	143, 345, 1914, 2328
BarI	GAAGNNNNNNTAC	4 cut(s)	679, 711, 2288, 2320
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	2638
Bbv12I	GWGCWC	3 cut(s)	345, 1231, 2839
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	258, 826, 1750, 3075
BccI	CCATC	8 cut(s)	75, 257, 565, 571, 1243, 1687, 2056, 3118
BceAI	ACGGC	2 cut(s)	479, 1751
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	5 cut(s)	1401, 2223, 2516, 2582, 2913
BciVI	GTATCC	2 cut(s)	709, 2219
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	8 cut(s)	82, 87, 89, 404, 483, 2008, 2795, 2939
BfaI	CTAG	4 cut(s)	74, 660, 860, 3133
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	2031
BfuAI	ACCTGC	1 cut(s)	1844
BfuI	GTATCC	2 cut(s)	709, 2219
BisI	GCNGC	6 cut(s)	235, 272, 840, 1236, 1764, 3089
BlsI	GCNGC	6 cut(s)	236, 273, 841, 1237, 1765, 3090
Bme1390I	CCNGG	6 cut(s)	566, 1401, 2223, 2516, 2582, 2913
Bme18I	GGWCC	4 cut(s)	361, 810, 2218, 2658
BmeRI	GACNNNNNGTC	2 cut(s)	496, 1666
BmeT110I	CYCGRG	2 cut(s)	1429, 2992
BmgBI	CACGTC	1 cut(s)	2449
BmgT120I	GGNCC	5 cut(s)	361, 810, 1189, 2218, 2658
BmiI	GGNNCC	8 cut(s)	142, 230, 897, 1975, 2029, 2220, 2629, 2873
BmrFI	CCNGG	6 cut(s)	566, 1401, 2223, 2516, 2582, 2913
BmrI	ACTGGG	2 cut(s)	146, 2173
BmsI	GCATC	9 cut(s)	388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
BmuI	ACTGGG	2 cut(s)	146, 2173
BpiI	GAAGAC	1 cut(s)	2638
BplI	GAGNNNNNCTC	4 cut(s)	113, 145, 236, 268
BpmI	CTGGAG	3 cut(s)	909, 2292, 2564
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	3 cut(s)	1520, 1659, 2934
BpuMI	CCSGG	1 cut(s)	566
BsaAI	YACGTR	1 cut(s)	1760
BsaHI	GRCGYC	4 cut(s)	204, 492, 2028, 3096
BsaI	GGTCTC	3 cut(s)	87, 89, 404
BsaJI	CCNNGG	7 cut(s)	364, 565, 1112, 1192, 2221, 2515, 2631
BsaWI	WCCGGW	2 cut(s)	595, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 501, 571, 2022, 2062, 2419
Bse118I	RCCGGY	1 cut(s)	1958
Bse1I	ACTGG	7 cut(s)	141, 1801, 2000, 2122, 2168, 2836, 2905
Bse3DI	GCAATG	3 cut(s)	281, 416, 1163
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	5 cut(s)	1401, 2223, 2516, 2582, 2913
BseDI	CCNNGG	7 cut(s)	364, 565, 1112, 1192, 2221, 2515, 2631
BseGI	GGATG	9 cut(s)	403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BseLI	CCNNNNNNNGG	6 cut(s)	24, 501, 571, 2022, 2062, 2419
BseMI	GCAATG	3 cut(s)	281, 416, 1163
BseMII	CTCAG	9 cut(s)	93, 358, 615, 628, 1145, 2201, 2369, 2390, 2934
BseNI	ACTGG	7 cut(s)	141, 1801, 2000, 2122, 2168, 2836, 2905
BseRI	GAGGAG	3 cut(s)	142, 669, 2271
BseSI	GKGCMC	1 cut(s)	2522
BseXI	GCAGC	4 cut(s)	258, 826, 1750, 3075
BseYI	CCCAGC	4 cut(s)	159, 421, 439, 1733
BsgI	GTGCAG	1 cut(s)	1199
Bsh1236I	CGCG	2 cut(s)	815, 2785
Bsh1285I	CGRYCG	1 cut(s)	1480
BshFI	GGCC	2 cut(s)	248, 1190
BshNI	GGYRCC	1 cut(s)	2027
BsiEI	CGRYCG	1 cut(s)	1480
BsiHKAI	GWGCWC	3 cut(s)	345, 1231, 2839
BsiHKCI	CYCGRG	2 cut(s)	1429, 2992
BsiSI	CCGG	4 cut(s)	565, 596, 764, 1959
BslFI	GGGAC	3 cut(s)	1071, 2204, 2768
BslI	CCNNNNNNNGG	6 cut(s)	24, 501, 571, 2022, 2062, 2419
BsmAI	GTCTC	8 cut(s)	82, 87, 89, 404, 483, 2008, 2795, 2939
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	3 cut(s)	1071, 2204, 2768
BsmI	GAATGC	2 cut(s)	907, 921
BsnI	GGCC	2 cut(s)	248, 1190
Bso31I	GGTCTC	3 cut(s)	87, 89, 404
BsoBI	CYCGRG	2 cut(s)	1429, 2992
Bsp1286I	GDGCHC	7 cut(s)	143, 345, 1231, 1914, 2328, 2522, 2839
Bsp13I	TCCGGA	1 cut(s)	763
Bsp1407I	TGTACA	2 cut(s)	9, 735
Bsp143I	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	9 cut(s)	232, 235, 384, 414, 649, 813, 1236, 2611, 2656
BspANI	GGCC	2 cut(s)	248, 1190
BspCNI	CTCAG	9 cut(s)	92, 357, 616, 627, 1146, 2202, 2368, 2389, 2935
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	2 cut(s)	815, 2785
BspHI	TCATGA	2 cut(s)	1725, 1824
BspLI	GGNNCC	8 cut(s)	142, 230, 897, 1975, 2029, 2220, 2629, 2873
BspMI	ACCTGC	1 cut(s)	1844
BspPI	GGATC	2 cut(s)	2622, 2911
BspT107I	GGYRCC	1 cut(s)	2027
BspTNI	GGTCTC	3 cut(s)	87, 89, 404
BsrDI	GCAATG	3 cut(s)	281, 416, 1163
BsrFI	RCCGGY	1 cut(s)	1958
BsrGI	TGTACA	2 cut(s)	9, 735
BsrI	ACTGG	7 cut(s)	141, 1801, 2000, 2122, 2168, 2836, 2905
BssAI	RCCGGY	1 cut(s)	1958
BssECI	CCNNGG	7 cut(s)	364, 565, 1112, 1192, 2221, 2515, 2631
BssMI	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
BssNI	GRCGYC	4 cut(s)	204, 492, 2028, 3096
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	3 cut(s)	364, 1192, 2631
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	5 cut(s)	1401, 2223, 2516, 2582, 2913
Bst4CI	ACNGT	4 cut(s)	1496, 2231, 2759, 2871
Bst6I	CTCTTC	1 cut(s)	2289
BstACI	GRCGYC	4 cut(s)	204, 492, 2028, 3096
BstAUI	TGTACA	2 cut(s)	9, 735
BstBAI	YACGTR	1 cut(s)	1760
BstC8I	GCNNGC	6 cut(s)	950, 1188, 1540, 2017, 2638, 2771
BstDSI	CCRYGG	2 cut(s)	364, 1112
BstEII	GGTNACC	2 cut(s)	1023, 1658
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstF5I	GGATG	9 cut(s)	403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BstFNI	CGCG	2 cut(s)	815, 2785
BstH2I	RGCGCY	1 cut(s)	2031
BstHHI	GCGC	2 cut(s)	2030, 2787
BstKTI	GATC	7 cut(s)	1428, 1731, 1889, 1966, 2578, 2617, 2906
BstMAI	GTCTC	8 cut(s)	82, 87, 89, 404, 483, 2008, 2795, 2939
BstMBI	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
BstMCI	CGRYCG	1 cut(s)	1480
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 747, 1235, 2025
BstNI	CCWGG	5 cut(s)	1401, 2223, 2516, 2582, 2913
BstNSI	RCATGY	6 cut(s)	16, 485, 1222, 1645, 1935, 2773
BstPI	GGTNACC	2 cut(s)	1023, 1658
BstSCI	CCNGG	6 cut(s)	564, 1399, 2221, 2514, 2580, 2911
BstSFI	CTRYAG	1 cut(s)	996
BstSLI	GKGCMC	1 cut(s)	2522
BstUI	CGCG	2 cut(s)	815, 2785
BstV1I	GCAGC	4 cut(s)	258, 826, 1750, 3075
BstV2I	GAAGAC	1 cut(s)	2638
BstX2I	RGATCY	1 cut(s)	2614
BstYI	RGATCY	1 cut(s)	2614
BsuI	GTATCC	2 cut(s)	709, 2219
BsuRI	GGCC	2 cut(s)	248, 1190
BtgI	CCRYGG	2 cut(s)	364, 1112
BtgZI	GCGATG	2 cut(s)	776, 830
BtrI	CACGTC	1 cut(s)	2449
BtsCI	GGATG	9 cut(s)	403, 457, 576, 1315, 1396, 2048, 2067, 2428, 3034
BtsI	GCAGTG	1 cut(s)	798
BtsIMutI	CAGTG	7 cut(s)	47, 352, 622, 672, 798, 2115, 2236
BveI	ACCTGC	1 cut(s)	1844
Cac8I	GCNNGC	6 cut(s)	950, 1188, 1540, 2017, 2638, 2771
CaiI	CAGNNNCTG	2 cut(s)	1859, 2006
CciI	TCATGA	2 cut(s)	1725, 1824
CfoI	GCGC	2 cut(s)	2030, 2787
Cfr10I	RCCGGY	1 cut(s)	1958
Cfr13I	GGNCC	5 cut(s)	361, 810, 1189, 2218, 2658
CseI	GACGC	3 cut(s)	193, 500, 2791
Csp6I	GTAC	5 cut(s)	10, 593, 736, 1342, 2730
CviQI	GTAC	5 cut(s)	10, 593, 736, 1342, 2730
DinI	GGCGCC	1 cut(s)	2029
DpnI	GATC	7 cut(s)	1427, 1730, 1888, 1965, 2577, 2616, 2905
DpnII	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
DriI	GACNNNNNGTC	2 cut(s)	496, 1666
Eam1104I	CTCTTC	1 cut(s)	2289
Eam1105I	GACNNNNNGTC	2 cut(s)	496, 1666
EarI	CTCTTC	1 cut(s)	2289
EciI	GGCGGA	1 cut(s)	664
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	364, 1192, 2631
Eco24I	GRGCYC	4 cut(s)	143, 345, 1914, 2328
Eco31I	GGTCTC	3 cut(s)	87, 89, 404
Eco32I	GATATC	1 cut(s)	1984
Eco47I	GGWCC	4 cut(s)	361, 810, 2218, 2658
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	1649, 2172
Eco88I	CYCGRG	2 cut(s)	1429, 2992
Eco91I	GGTNACC	2 cut(s)	1023, 1658
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	2218
EcoO65I	GGTNACC	2 cut(s)	1023, 1658
EcoRI	GAATTC	2 cut(s)	1417, 2501
EcoRII	CCWGG	5 cut(s)	1399, 2221, 2514, 2580, 2911
EcoRV	GATATC	1 cut(s)	1984
EcoT14I	CCWWGG	3 cut(s)	364, 1192, 2631
EcoT22I	ATGCAT	1 cut(s)	483
EcoT38I	GRGCYC	4 cut(s)	143, 345, 1914, 2328
EgeI	GGCGCC	1 cut(s)	2029
EheI	GGCGCC	1 cut(s)	2029
ErhI	CCWWGG	3 cut(s)	364, 1192, 2631
Esp3I	CGTCTC	1 cut(s)	483
FalI	AAGNNNNNCTT	2 cut(s)	2836, 2868
FaqI	GGGAC	3 cut(s)	1071, 2204, 2768
FauI	CCCGC	2 cut(s)	377, 2604
FauNDI	CATATG	2 cut(s)	2021, 3047
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	6 cut(s)	235, 272, 840, 1236, 1764, 3089
FokI	GGATG	9 cut(s)	410, 464, 583, 1322, 1383, 2055, 2074, 2435, 3021
FriOI	GRGCYC	4 cut(s)	143, 345, 1914, 2328
Fsp4HI	GCNGC	6 cut(s)	235, 272, 840, 1236, 1764, 3089
FspBI	CTAG	4 cut(s)	74, 660, 860, 3133
GlaI	GCGC	2 cut(s)	2029, 2786
GluI	GCNGC	6 cut(s)	235, 272, 840, 1236, 1764, 3089
GsaI	CCCAGC	4 cut(s)	163, 425, 443, 1737
GsuI	CTGGAG	3 cut(s)	909, 2292, 2564
HaeII	RGCGCY	1 cut(s)	2031
HaeIII	GGCC	2 cut(s)	248, 1190
HapII	CCGG	4 cut(s)	565, 596, 764, 1959
HgaI	GACGC	3 cut(s)	193, 500, 2791
HhaI	GCGC	2 cut(s)	2030, 2787
Hin1I	GRCGYC	4 cut(s)	204, 492, 2028, 3096
Hin6I	GCGC	2 cut(s)	2028, 2785
HinP1I	GCGC	2 cut(s)	2028, 2785
HincII	GTYRAC	2 cut(s)	1942, 2488
HindII	GTYRAC	2 cut(s)	1942, 2488
HindIII	AAGCTT	2 cut(s)	1536, 2561
HpaII	CCGG	4 cut(s)	565, 596, 764, 1959
HphI	GGTGA	9 cut(s)	350, 553, 586, 1017, 1507, 1571, 1670, 1973, 3033
Hpy166II	GTNNAC	7 cut(s)	696, 1000, 1579, 1942, 2305, 2352, 2488
Hpy8I	GTNNAC	7 cut(s)	696, 1000, 1579, 1942, 2305, 2352, 2488
HpyCH4III	ACNGT	4 cut(s)	1496, 2231, 2759, 2871
HpyCH4IV	ACGT	4 cut(s)	911, 1759, 2448, 3096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 747, 1235, 2025
HpySE526I	ACGT	4 cut(s)	911, 1759, 2448, 3096
Hsp92I	GRCGYC	4 cut(s)	204, 492, 2028, 3096
HspAI	GCGC	2 cut(s)	2028, 2785
KasI	GGCGCC	1 cut(s)	2027
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
LmnI	GCTCC	7 cut(s)	146, 436, 656, 895, 1547, 1973, 2267
Lsp1109I	GCAGC	4 cut(s)	258, 826, 1750, 3075
LweI	GCATC	9 cut(s)	388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
MaeI	CTAG	4 cut(s)	74, 660, 860, 3133
MaeII	ACGT	4 cut(s)	911, 1759, 2448, 3096
MalI	GATC	7 cut(s)	1427, 1730, 1888, 1965, 2577, 2616, 2905
MboI	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
MboII	GAAGA	5 cut(s)	1877, 2276, 2638, 3028, 3075
MflI	RGATCY	1 cut(s)	2614
MhlI	GDGCHC	7 cut(s)	143, 345, 1231, 1914, 2328, 2522, 2839
Mly113I	GGCGCC	1 cut(s)	2028
MmeI	TCCRAC	1 cut(s)	534
Mph1103I	ATGCAT	1 cut(s)	483
MroI	TCCGGA	1 cut(s)	763
MseI	TTAA	9 cut(s)	873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
MslI	CAYNNNNRTG	5 cut(s)	675, 926, 1854, 2478, 3046
MspI	CCGG	4 cut(s)	565, 596, 764, 1959
MspR9I	CCNGG	6 cut(s)	566, 1401, 2223, 2516, 2582, 2913
Mva1269I	GAATGC	2 cut(s)	907, 921
MvaI	CCWGG	5 cut(s)	1401, 2223, 2516, 2582, 2913
MvnI	CGCG	2 cut(s)	815, 2785
MwoI	GCNNNNNNNGC	4 cut(s)	285, 747, 1235, 2025
NarI	GGCGCC	1 cut(s)	2028
NciI	CCSGG	1 cut(s)	566
NcoI	CCATGG	1 cut(s)	364
NdeI	CATATG	2 cut(s)	2021, 3047
NdeII	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
NlaIV	GGNNCC	8 cut(s)	142, 230, 897, 1975, 2029, 2220, 2629, 2873
NmuCI	GTSAC	7 cut(s)	604, 907, 1023, 1513, 1658, 2462, 2510
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	6 cut(s)	16, 485, 1222, 1645, 1935, 2773
PaeI	GCATGC	1 cut(s)	2773
PaeR7I	CTCGAG	1 cut(s)	2992
PagI	TCATGA	2 cut(s)	1725, 1824
PaqCI	CACCTGC	1 cut(s)	1844
PciI	ACATGT	1 cut(s)	1641
PctI	GAATGC	2 cut(s)	907, 921
PfeI	GAWTC	7 cut(s)	599, 1013, 1208, 1364, 1800, 2049, 2262
PflMI	CCANNNNNTGG	2 cut(s)	2022, 2062
PfoI	TCCNGGA	1 cut(s)	2580
PkrI	GCNGC	6 cut(s)	236, 273, 841, 1237, 1765, 3090
PluTI	GGCGCC	1 cut(s)	2031
Ppu21I	YACGTR	1 cut(s)	1760
PpuMI	RGGWCCY	1 cut(s)	2218
PscI	ACATGT	1 cut(s)	1641
PshBI	ATTAAT	1 cut(s)	2189
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	2218
Psp6I	CCWGG	5 cut(s)	1399, 2221, 2514, 2580, 2911
PspEI	GGTNACC	2 cut(s)	1023, 1658
PspFI	CCCAGC	4 cut(s)	159, 421, 439, 1733
PspGI	CCWGG	5 cut(s)	1399, 2221, 2514, 2580, 2911
PspN4I	GGNNCC	8 cut(s)	142, 230, 897, 1975, 2029, 2220, 2629, 2873
PspPI	GGNCC	5 cut(s)	361, 810, 1189, 2218, 2658
PspPPI	RGGWCCY	1 cut(s)	2218
PspXI	VCTCGAGB	1 cut(s)	2992
PstNI	CAGNNNCTG	2 cut(s)	1859, 2006
PsuI	RGATCY	1 cut(s)	2614
RsaI	GTAC	5 cut(s)	11, 594, 737, 1343, 2731
RsaNI	GTAC	5 cut(s)	10, 593, 736, 1342, 2730
RseI	CAYNNNNRTG	5 cut(s)	675, 926, 1854, 2478, 3046
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	9 cut(s)	873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
SatI	GCNGC	6 cut(s)	235, 272, 840, 1236, 1764, 3089
Sau3AI	GATC	7 cut(s)	1425, 1728, 1886, 1963, 2575, 2614, 2903
Sau96I	GGNCC	5 cut(s)	361, 810, 1189, 2218, 2658
ScrFI	CCNGG	6 cut(s)	566, 1401, 2223, 2516, 2582, 2913
SduI	GDGCHC	7 cut(s)	143, 345, 1231, 1914, 2328, 2522, 2839
SfaNI	GCATC	9 cut(s)	388, 445, 812, 867, 1173, 1279, 2002, 2088, 2413
SfcI	CTRYAG	1 cut(s)	996
SfoI	GGCGCC	1 cut(s)	2029
Sfr274I	CTCGAG	1 cut(s)	2992
SinI	GGWCC	4 cut(s)	361, 810, 2218, 2658
SlaI	CTCGAG	1 cut(s)	2992
SmiMI	CAYNNNNRTG	5 cut(s)	675, 926, 1854, 2478, 3046
SmlI	CTYRAG	4 cut(s)	1499, 1674, 2949, 2992
SmoI	CTYRAG	4 cut(s)	1499, 1674, 2949, 2992
SphI	GCATGC	1 cut(s)	2773
SsiI	CCGC	9 cut(s)	232, 235, 384, 414, 649, 813, 1236, 2611, 2656
SspDI	GGCGCC	1 cut(s)	2027
SspI	AATATT	2 cut(s)	1380, 1831
SspMI	CTAG	4 cut(s)	74, 660, 860, 3133
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	6 cut(s)	564, 1399, 2221, 2514, 2580, 2911
StyI	CCWWGG	3 cut(s)	364, 1192, 2631
TaaI	ACNGT	4 cut(s)	1496, 2231, 2759, 2871
TaiI	ACGT	4 cut(s)	914, 1762, 2451, 3099
TaqII	GACCGA	1 cut(s)	1494
TatI	WGTACW	4 cut(s)	9, 735, 1341, 2729
TauI	GCSGC	2 cut(s)	237, 1238
TfiI	GAWTC	7 cut(s)	599, 1013, 1208, 1364, 1800, 2049, 2262
Tru1I	TTAA	9 cut(s)	873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
Tru9I	TTAA	9 cut(s)	873, 1083, 1523, 1989, 2073, 2103, 2189, 2715, 3114
TscAI	CASTG	7 cut(s)	54, 352, 622, 672, 805, 2122, 2236
TseFI	GTSAC	7 cut(s)	604, 907, 1023, 1513, 1658, 2462, 2510
TseI	GCWGC	4 cut(s)	271, 839, 1763, 3088
Tsp45I	GTSAC	7 cut(s)	604, 907, 1023, 1513, 1658, 2462, 2510
TspGWI	ACGGA	3 cut(s)	592, 1101, 2322
TspRI	CASTG	7 cut(s)	54, 352, 622, 672, 805, 2122, 2236
Van91I	CCANNNNNTGG	2 cut(s)	2022, 2062
VpaK11BI	GGWCC	4 cut(s)	361, 810, 2218, 2658
VspI	ATTAAT	1 cut(s)	2189
XagI	CCTNNNNNAGG	1 cut(s)	22
XapI	RAATTY	7 cut(s)	1077, 1417, 1482, 2171, 2501, 2603, 2808
XceI	RCATGY	6 cut(s)	16, 485, 1222, 1645, 1935, 2773
XhoI	CTCGAG	1 cut(s)	2992
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	4 cut(s)	74, 660, 860, 3133
ZraI	GACGTC	1 cut(s)	3097
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.