Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004735

Physical Location & Seq

Genomic Coordinates Reverse (-)

16212932 .. 16219604

Gene Structure 6673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1180800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGAATGTTTCCAGCTTAAAAGCTCGGTACCTTGACTCTTGCCAAAAACACGAGGTGCAACCCAATTCAGCAATTCTATCATGGTTTTCTCAGGCCAAAATTCAGAGTTCGAACAACGAAAAGTGTAGCATAGTGATTTCGTTAGACCAGCTAAGGGATGCCGATATTTTGCCTCTAACCAACCTACTTATGTCAAGTGACTCGGCTGACATTGATGCCGTTGACATATTTCTGGAATCCAATAGTGACTTGGGCAAAGAAAATGTTAAGACCTTGATAAATGCAGTCAATCTAAAGCTTCGAGTCATCGATCTCCAGGATTTGGCATTGGGGAATGATTTTCTGTGGGATCTCTTACAAGGTTGCTTGGCTTGCCAAGTCTTCAACTTGAGGTCTATTAATATCCAGAAACTCAACATGGTTGGAAGCTTTTTGCAGCTGCATACGCTCCGTCTGGACTTTTGTACTTCACTTGCTAGTTTGCAGAAGGACTGTTTTTCTGGCATGCCTAATTTGATGCGTCTCTCAATGTGCGAGACAACAATTGCTAATCTCATGGCAACAACTGGTGCTCTATCAAAACTTCCGTCTTTGGTGGAATTACGGTTCCAAAGTTGTTTGTGCTGCAAGGACACTGGGGCATGTTCTAATTTACAAGGACAACACAACTTACAGAGTGAGGTTCAAGAAAAAGATGAGTTCCTTGTAAGTGTGTGTAAGCTAGACCTGAAGAATCCCGCTATCACATTAAAGTATATAACTCATTGTCGCTCGCCCATATGCTTTGAGAAATATTACCGGGAGTACATGATTTCAATGCTCCCTGGTTTGGAAGTTTTGGATAATCTTCCTATCGGAAAGACCGAAAGGGAATTGGCCATGACAACTGCAGAAAAATACTATGAATACTTACCTTACAAGAGACATCACAAAGAAAGTGTTGTTAGTGTTTTGCATAAGCGTGAAATGGGAACAAATGTTATACACTACCAAAGACCATTCAAGCCAAAACAGCTGCATCCTTATAGAAATGGCCAGAATTTTTTCTTGAGGTCCCTTTGCGCTGCCAAAATCGGGTCTTCAATGTGGCCACTCTTACATCCGCTGTCTAAGTTTAGCCACTCATTTAAAACCGAAAACAAGAAGCTTCGTCCAAGGCAGTTTGAGTATCATCCATCAAACCCCAGTCTTATGGTTTTCGGAAGCCTGGATGGTGAAGTAGTTGTTCTCAACCATGAAAACGAGAAAATAGTTGGTTATATCCCATCCGTAGGAAGAGCAATGAGCAGTGTCTTGGGGCTTTGTTGGCTCAACAAAAATCCATCAAAGCTTGTTGCTGGTTCAGATAATGGTTCCTTGAAGTTGTTTGACATCAATTACATGTCACGAGAAGTTTCAGGCTCCTTCTGCAGCTCCAGTGCTGCAACTTTTGACGATTTCGAGCAGTTGACTTCTCTTCATGTAAATTCAACTGATGACCAGCTTCTTGCTAGTAGTTACTCTAAAGGTCTTGCTCTATATGACCTAGCAAGTGGAAAGCGTTTACAGTTGTTCACTAATATTCACCAAGAACCAATCAATGTTTCCAAATTTTCCCACCATTCCCCTTATGTGTTTGCTACTTCATCATTTGACCATGATGTGAAGATGTGGGATTTGAGACAGAATCCAATGCGGCCTTGCTATACAGCTTCAAGCTCAAGAGGAAACGTGATGGTTTGCTTTTCTCCCGACGACCTTTATTTGCTTGTTTCAGCTGTTGACAATGAGGTTAAGCAACTTTTGGCGGCAGATGGGAGGGTTCACATGAATTTTGAAATAGCTGCCACAGGAAGTTCTCATAATTATACTCGTTCATATTACATGAATGGAAGGGACTATATTATCAGCGGGAGTTGTGATGAGAATATAGTTCGCATTTGCTGCGCTCAAACTGGAAAGCGACTGAGGGATGTCCATTTGGAGGATACAGAGTCAGGAAATTCAATATTTGTGCAGTCCTTACGGGGTGATCCTTTCAGGCATTTTCACATGAGTATATTAGCAACCTCGACACGTCCAAGCTCTAAGTGGGAGATTATAAAGGTCAATTTACTTAGATCAAGTTGCTACTCAGAAGAGTATTCGTCTGGCCAATGTTTTCACCCTTCCTGCTGTCTCGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

723

Amino Acids

81.31

Weight (kDa)

7.27

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	3 - 214	6.3e-48	DWD hypersensitive to UV-B 1, N-terminal
DHU1_N	PF20919	247 - 296	1.2e-10	DWD hypersensitive to UV-B 1, N-terminal
WD40_Prp19	PF24814	388 - 592	2.8e-13	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	393 - 558	1.3e-07	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	396 - 556	2.7e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	399 - 638	2.9e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	406 - 592	3.4e-10	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	483 - 652	3.5e-11	THOC3 beta-propeller domain
WDR55	PF24796	487 - 594	4.1e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69350
fragaria_vesca	FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060 FvH4_1g17060
malus_domestica	MD02G1180800.v1.1 MD16G1065000.v1.1
prunus_persica	Prupe.1G281900_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1 Prupe.6G225400_v2.0.a1
pyrus_communis	pycom16g05680
rosa_chinensis	RchiOBHm_Chr2g0107231
rosa_laevigata	RLG00000017562
rosa_multiflora	Rmu_co8473113.1_g000001 Rmu_sc0027417.1_g000002 Rmu_sc0034517.1_g000001 Rmu_ssc0000269.1_g000007
rosa_roxburghii	Rroxscaffold_2G00136510 Rroxscaffold_2G00136520
rosa_rugosa	Rorug02G0141100 Rorug02G0141200
rosa_samantha	Rh2AG191900 Rh2BG203800 Rh2CG197100 Rh2DG199200
rosa_wichuraiana	Rw2G015170 Rw2G015180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2081
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	5 cut(s)	738, 1103, 1675, 1787, 1890
AclWI	GGATC	2 cut(s)	357, 2006
AcoI	YGGCCR	4 cut(s)	876, 1033, 1088, 2131
AcsI	RAATTY	6 cut(s)	99, 1039, 1465, 1589, 1810, 1981
AcuI	CTGAAG	1 cut(s)	749
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	3 cut(s)	29, 466, 806
AfiI	CCNNNNNNNGG	6 cut(s)	154, 322, 829, 1074, 1271, 1963
AflIII	ACRYGT	2 cut(s)	1380, 2054
AjiI	CACGTC	1 cut(s)	2057
AjnI	CCWGG	3 cut(s)	315, 823, 1206
AjuI	GAANNNNNNNTTGG	2 cut(s)	1567, 1599
AloI	GAACNNNNNNTCC	2 cut(s)	590, 622
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	5 cut(s)	527, 530, 916, 1654, 2162
AlwI	GGATC	2 cut(s)	357, 2006
AoxI	GGCC	6 cut(s)	93, 876, 1033, 1088, 1676, 2131
ApeKI	GCWGC	9 cut(s)	436, 439, 624, 1015, 1064, 1410, 1421, 1823, 1923
ApoI	RAATTY	6 cut(s)	99, 1039, 1465, 1589, 1810, 1981
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	1043
Asp718I	GGTACC	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	1064, 1928
AspS9I	GGNCC	1 cut(s)	1053
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	4 cut(s)	1226, 1556, 2021, 2135
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	1053
BalI	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
BanI	GGYRCC	1 cut(s)	27
BauI	CACGAG	2 cut(s)	50, 1386
BbsI	GAAGAC	2 cut(s)	373, 1071
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	9 cut(s)	426, 448, 611, 1002, 1051, 1408, 1422, 1810, 1910
BccI	CCATC	6 cut(s)	1183, 1205, 1273, 1330, 1708, 1787
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	3 cut(s)	317, 825, 1208
BciVI	GTATCC	1 cut(s)	1960
BcnI	CCSGG	1 cut(s)	800
BcoDI	GTCTC	5 cut(s)	527, 530, 916, 1654, 2162
BfaI	CTAG	4 cut(s)	477, 722, 1491, 1526
BfmI	CTRYAG	2 cut(s)	888, 1408
BfuI	GTATCC	1 cut(s)	1960
Bme1390I	CCNGG	4 cut(s)	317, 800, 825, 1208
Bme18I	GGWCC	1 cut(s)	1053
BmgBI	CACGTC	1 cut(s)	2057
BmgT120I	GGNCC	1 cut(s)	1053
BmiI	GGNNCC	5 cut(s)	29, 608, 1055, 1354, 1402
BmrFI	CCNGG	4 cut(s)	317, 800, 825, 1208
BmrI	ACTGGG	2 cut(s)	645, 1179
BmsI	GCATC	4 cut(s)	148, 205, 507, 1027
BmuI	ACTGGG	2 cut(s)	645, 1179
BpiI	GAAGAC	2 cut(s)	373, 1071
BpmI	CTGGAG	2 cut(s)	299, 1399
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	3 cut(s)	409, 1069, 1684
BpuMI	CCSGG	1 cut(s)	800
Bsa29I	ATCGAT	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	823, 1154
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 322, 829, 1074, 1271, 1963
Bse1I	ACTGG	5 cut(s)	571, 640, 1185, 1416, 1939
Bse3DI	GCAATG	1 cut(s)	1287
BseBI	CCWGG	3 cut(s)	317, 825, 1208
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	823, 1154
BseGI	GGATG	7 cut(s)	163, 1018, 1099, 1171, 1216, 1265, 1957
BseLI	CCNNNNNNNGG	6 cut(s)	154, 322, 829, 1074, 1271, 1963
BseMI	GCAATG	1 cut(s)	1287
BseMII	CTCAG	3 cut(s)	104, 1937, 2127
BseNI	ACTGG	5 cut(s)	571, 640, 1185, 1416, 1939
BseXI	GCAGC	9 cut(s)	426, 448, 611, 1002, 1051, 1408, 1422, 1810, 1910
BsgI	GTGCAG	1 cut(s)	2015
BshFI	GGCC	6 cut(s)	95, 878, 1035, 1090, 1678, 2133
BshNI	GGYRCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	2 cut(s)	1039, 1889
BslI	CCNNNNNNNGG	6 cut(s)	154, 322, 829, 1074, 1271, 1963
BsmAI	GTCTC	5 cut(s)	527, 530, 916, 1654, 2162
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	1039, 1889
BsnI	GGCC	6 cut(s)	95, 878, 1035, 1090, 1678, 2133
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	4 cut(s)	310, 349, 2011, 2099
BspACI	CCGC	5 cut(s)	738, 1103, 1675, 1787, 1890
BspANI	GGCC	6 cut(s)	95, 878, 1035, 1090, 1678, 2133
BspCNI	CTCAG	3 cut(s)	103, 1938, 2126
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	5 cut(s)	29, 608, 1055, 1354, 1402
BspMAI	CTGCAG	2 cut(s)	892, 1412
BspPI	GGATC	2 cut(s)	357, 2006
BspQI	GCTCTTC	1 cut(s)	1270
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	1287
BsrI	ACTGG	5 cut(s)	571, 640, 1185, 1416, 1939
BssECI	CCNNGG	2 cut(s)	823, 1154
BssMI	GATC	4 cut(s)	310, 349, 2011, 2099
BssSI	CACGAG	2 cut(s)	50, 1386
BssT1I	CCWWGG	1 cut(s)	1154
Bst2BI	CACGAG	2 cut(s)	50, 1386
Bst2UI	CCWGG	3 cut(s)	317, 825, 1208
Bst4CI	ACNGT	3 cut(s)	494, 606, 1548
Bst6I	CTCTTC	3 cut(s)	1270, 1461, 2112
BstAPI	GCANNNNNTGC	1 cut(s)	1923
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	373, 506, 773
BstDEI	CTNAG	7 cut(s)	90, 152, 1110, 1946, 2067, 2096, 2113
BstF5I	GGATG	7 cut(s)	163, 1018, 1099, 1171, 1216, 1265, 1957
BstHHI	GCGC	2 cut(s)	1064, 1928
BstKTI	GATC	4 cut(s)	313, 352, 2014, 2102
BstMAI	GTCTC	5 cut(s)	527, 530, 916, 1654, 2162
BstMBI	GATC	4 cut(s)	310, 349, 2011, 2099
BstMWI	GCNNNNNNNGC	6 cut(s)	372, 445, 1012, 1306, 1407, 1923
BstNI	CCWGG	3 cut(s)	317, 825, 1208
BstNSI	RCATGY	3 cut(s)	508, 645, 1384
BstSCI	CCNGG	4 cut(s)	315, 798, 823, 1206
BstSFI	CTRYAG	2 cut(s)	888, 1408
BstV1I	GCAGC	9 cut(s)	426, 448, 611, 1002, 1051, 1408, 1422, 1810, 1910
BstV2I	GAAGAC	2 cut(s)	373, 1071
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BstYI	RGATCY	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	1960
BsuRI	GGCC	6 cut(s)	95, 878, 1035, 1090, 1678, 2133
BsuTUI	ATCGAT	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	2057
BtsCI	GGATG	7 cut(s)	163, 1018, 1099, 1171, 1216, 1265, 1957
BtsI	GCAGTG	1 cut(s)	1294
BtsIMutI	CAGTG	3 cut(s)	633, 1294, 1423
Cac8I	GCNNGC	3 cut(s)	373, 506, 773
CfoI	GCGC	2 cut(s)	1064, 1928
Cfr13I	GGNCC	1 cut(s)	1053
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	3 cut(s)	28, 465, 805
CviQI	GTAC	3 cut(s)	28, 465, 805
DdeI	CTNAG	7 cut(s)	90, 152, 1110, 1946, 2067, 2096, 2113
DpnI	GATC	4 cut(s)	312, 351, 2013, 2101
DpnII	GATC	4 cut(s)	310, 349, 2011, 2099
DraI	TTTAAA	1 cut(s)	1129
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	4 cut(s)	876, 1033, 1088, 2131
Eam1104I	CTCTTC	3 cut(s)	1270, 1461, 2112
EarI	CTCTTC	3 cut(s)	1270, 1461, 2112
Eco130I	CCWWGG	1 cut(s)	1154
Eco47I	GGWCC	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	1053
EcoRII	CCWGG	3 cut(s)	315, 823, 1206
EcoT14I	CCWWGG	1 cut(s)	1154
ErhI	CCWWGG	1 cut(s)	1154
Esp3I	CGTCTC	1 cut(s)	527
FaqI	GGGAC	2 cut(s)	1039, 1889
FauI	CCCGC	2 cut(s)	745, 1883
FauNDI	CATATG	1 cut(s)	779
FokI	GGATG	7 cut(s)	170, 1005, 1086, 1158, 1223, 1252, 1964
FspBI	CTAG	4 cut(s)	477, 722, 1491, 1526
GlaI	GCGC	2 cut(s)	1063, 1927
GsuI	CTGGAG	2 cut(s)	299, 1399
HaeIII	GGCC	6 cut(s)	95, 878, 1035, 1090, 1678, 2133
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	2 cut(s)	1064, 1928
Hin6I	GCGC	2 cut(s)	1062, 1926
HinP1I	GCGC	2 cut(s)	1062, 1926
HincII	GTYRAC	3 cut(s)	223, 1449, 1762
HindII	GTYRAC	3 cut(s)	223, 1449, 1762
HindIII	AAGCTT	4 cut(s)	296, 427, 1145, 1328
HinfI	GANTC	7 cut(s)	35, 200, 236, 303, 733, 1666, 1973
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	4 cut(s)	1226, 1556, 2021, 2135
Hpy166II	GTNNAC	6 cut(s)	223, 1449, 1544, 1554, 1762, 1804
Hpy188I	TCNGA	6 cut(s)	105, 857, 1202, 1345, 2116, 2162
Hpy188III	TCNNGA	9 cut(s)	233, 406, 455, 686, 1048, 1386, 1701, 1730, 1977
Hpy8I	GTNNAC	6 cut(s)	223, 1449, 1544, 1554, 1762, 1804
Hpy99I	CGWCG	1 cut(s)	1736
HpyAV	CCTTC	4 cut(s)	481, 1414, 1866, 2157
HpyCH4III	ACNGT	3 cut(s)	494, 606, 1548
HpyCH4IV	ACGT	2 cut(s)	1710, 2056
HpyF10VI	GCNNNNNNNGC	6 cut(s)	372, 445, 1012, 1306, 1407, 1923
HpyF3I	CTNAG	7 cut(s)	90, 152, 1110, 1946, 2067, 2096, 2113
HpySE526I	ACGT	2 cut(s)	1710, 2056
HspAI	GCGC	2 cut(s)	1062, 1926
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	310, 349, 2011, 2099
LguI	GCTCTTC	1 cut(s)	1270
LmnI	GCTCC	5 cut(s)	453, 825, 1406, 1418, 2162
Lsp1109I	GCAGC	9 cut(s)	426, 448, 611, 1002, 1051, 1408, 1422, 1810, 1910
LweI	GCATC	4 cut(s)	148, 205, 507, 1027
MaeI	CTAG	4 cut(s)	477, 722, 1491, 1526
MaeII	ACGT	2 cut(s)	1710, 2056
MaeIII	GTNAC	4 cut(s)	197, 245, 1383, 1496
MalI	GATC	4 cut(s)	312, 351, 2013, 2101
MboI	GATC	4 cut(s)	310, 349, 2011, 2099
MboII	GAAGA	8 cut(s)	373, 742, 839, 1071, 1287, 1448, 1657, 2129
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	574
MlsI	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
MluNI	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
MlyI	GAGTC	4 cut(s)	29, 194, 312, 1982
MmeI	TCCRAC	1 cut(s)	403
Mox20I	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
MroXI	GAANNNNTTC	1 cut(s)	1043
MscI	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
MseI	TTAA	6 cut(s)	17, 267, 399, 749, 1128, 1773
MslI	CAYNNNNRTG	1 cut(s)	960
Msp20I	TGGCCA	4 cut(s)	878, 1035, 1090, 2133
MspA1I	CMGCKG	5 cut(s)	439, 1015, 1105, 1757, 1890
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	4 cut(s)	317, 800, 825, 1208
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	3 cut(s)	317, 825, 1208
MwoI	GCNNNNNNNGC	6 cut(s)	372, 445, 1012, 1306, 1407, 1923
NciI	CCSGG	1 cut(s)	800
NdeI	CATATG	1 cut(s)	779
NdeII	GATC	4 cut(s)	310, 349, 2011, 2099
NlaIV	GGNNCC	5 cut(s)	29, 608, 1055, 1354, 1402
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	3 cut(s)	197, 245, 1383
NspI	RCATGY	3 cut(s)	508, 645, 1384
NspV	TTCGAA	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	508
PciI	ACATGT	1 cut(s)	1380
PciSI	GCTCTTC	1 cut(s)	1270
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	1043
PfeI	GAWTC	3 cut(s)	236, 733, 1666
PflMI	CCANNNNNTGG	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	315
PleI	GAGTC	4 cut(s)	29, 194, 311, 1981
PpsI	GAGTC	4 cut(s)	29, 194, 311, 1981
PpuMI	RGGWCCY	1 cut(s)	1053
PscI	ACATGT	1 cut(s)	1380
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	2081
Psp5II	RGGWCCY	1 cut(s)	1053
Psp6I	CCWGG	3 cut(s)	315, 823, 1206
PspGI	CCWGG	3 cut(s)	315, 823, 1206
PspN4I	GGNNCC	5 cut(s)	29, 608, 1055, 1354, 1402
PspPI	GGNCC	1 cut(s)	1053
PspPPI	RGGWCCY	1 cut(s)	1053
PstI	CTGCAG	2 cut(s)	892, 1412
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	3 cut(s)	439, 1015, 1757
RsaI	GTAC	3 cut(s)	29, 466, 806
RsaNI	GTAC	3 cut(s)	28, 465, 805
RseI	CAYNNNNRTG	1 cut(s)	960
SapI	GCTCTTC	1 cut(s)	1270
SaqAI	TTAA	6 cut(s)	17, 267, 399, 749, 1128, 1773
Sau3AI	GATC	4 cut(s)	310, 349, 2011, 2099
Sau96I	GGNCC	1 cut(s)	1053
SchI	GAGTC	4 cut(s)	29, 194, 312, 1982
ScrFI	CCNGG	4 cut(s)	317, 800, 825, 1208
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	4 cut(s)	148, 205, 507, 1027
SfcI	CTRYAG	2 cut(s)	888, 1408
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	1 cut(s)	1053
SmiMI	CAYNNNNRTG	1 cut(s)	960
SmlI	CTYRAG	3 cut(s)	388, 1048, 1699
SmoI	CTYRAG	3 cut(s)	388, 1048, 1699
SphI	GCATGC	1 cut(s)	508
SsiI	CCGC	5 cut(s)	738, 1103, 1675, 1787, 1890
SspI	AATATT	3 cut(s)	794, 1561, 1989
SspMI	CTAG	4 cut(s)	477, 722, 1491, 1526
StyD4I	CCNGG	4 cut(s)	315, 798, 823, 1206
StyI	CCWWGG	1 cut(s)	1154
TaaI	ACNGT	3 cut(s)	494, 606, 1548
TaiI	ACGT	2 cut(s)	1713, 2059
TaqI	TCGA	5 cut(s)	110, 301, 309, 1440, 2051
TaqII	GACCGA	1 cut(s)	878
TatI	WGTACW	2 cut(s)	464, 804
TauI	GCSGC	2 cut(s)	1678, 1790
TfiI	GAWTC	3 cut(s)	236, 733, 1666
Tru1I	TTAA	6 cut(s)	17, 267, 399, 749, 1128, 1773
Tru9I	TTAA	6 cut(s)	17, 267, 399, 749, 1128, 1773
TscAI	CASTG	3 cut(s)	640, 1294, 1423
TseFI	GTSAC	3 cut(s)	197, 245, 1383
TseI	GCWGC	9 cut(s)	436, 439, 624, 1015, 1064, 1410, 1421, 1823, 1923
Tsp45I	GTSAC	3 cut(s)	197, 245, 1383
TspDTI	ATGAA	8 cut(s)	17, 918, 1251, 1448, 1614, 1823, 1845, 1880
TspGWI	ACGGA	3 cut(s)	440, 576, 1258
TspRI	CASTG	3 cut(s)	640, 1294, 1423
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	1053
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	6 cut(s)	99, 1039, 1465, 1589, 1810, 1981
XceI	RCATGY	3 cut(s)	508, 645, 1384
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 2067
XmnI	GAANNNNTTC	1 cut(s)	1043
XspI	CTAG	4 cut(s)	477, 722, 1491, 1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.