Rmu_co8473113.1_g000001

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8473113.1
Physical Location & Seq
Reverse (-)
57 .. 1751
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8473113.1_g000001.1.cds

Sequence Viewer

Length: 1413 bp
atgactggtgctctgtcaagacttccttgtttgcttgaactacggttccaaagctgtttatgttgcaaggaaactggatcatgtcctggtttagaagggcaacagaaattgcagactgagactcaagaaaaagatgaaacccttgtaagtgagggtaagaaagcctcgaggaatgtgagtattacattgaagaactttgtaactcatcatccttcacccatatgctttgagaaacattatcgggagtatatcatatcttcgctgcctggtctggaagttttagataattttcctattagaatgacggagagggaattggccaagatgacgtctgcaaagtactatgaatacttaccttataagagacggcacaaagaaagtgttgttagtgttttgaataagcgtgaaatgggaactagtggtgtacacttccagaaaccattcaagccaaaacaattatatcctcatcgaaatggtcagaattttttcttgaggtcgctgtgtgctgccaaacttgggtcttcaacttggccactgttacatccactttccaatttcaaccacacatgtaaagcagaaaacaagaagcttcgtccaaggcagtttgagtatcatccatcaaacccaagtcttatggttttcggaactctggatggtgaagtagtggttactaaccatgaaaacgggaagatggttggttatattccatgcataggagcaatgagtagtgtcttggggctttgctggctcaacaagtctccgtccaagcttgttgctggttcagataagggctccttgaagttactcgacatcaacaacatgtcaccagaagttgcagactattgttgcagctctagtggtgcaacttttgaagatttcgagcaattaacttctcttcatgtaaattcaactgatgaccagcttctcgctagtggatactccaaaggccttgctctgtatgacgttggcagtggaaaacgtttagagttgttcagtaatcttcaccgagaaccgatcaatgttgccaaatttgcacaccattccccttatatgtttgctacttcatcctttgaccatgatgtgaagttgtgggatttgagacagagcccaaggaaaccgtgctatacagcttctagctcgagaggaaatgtgatggcttgcttttctcctgatgaccattatttgcttgtttcagctgttgacaatgaggttaagcaacttttggcggcagatggcaggctgcacatgagttttgagatagcttcaacaggaagtcctcataactatacgcggtcgtattacatgaatggaagggactatatcatcagtggaagttgcgatgaggacgtgattcgcatctgctgtgctcaaactggaaagcgacttagggatgtttatttggaggtagattag

Protein Analysis

470

Amino Acids

52.84

Weight (kDa)

8.34

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AatII GACGTC 1 cut(s) 332
AbsI CCTCGAGG 1 cut(s) 166
AccII CGCG 1 cut(s) 1291
AciI CCGC 2 cut(s) 1226, 1291
AclI AACGTT 1 cut(s) 979
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 2 cut(s) 318, 530
AcsI RAATTY 3 cut(s) 481, 904, 1028
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 2 cut(s) 341, 426
AfiI CCNNNNNNNGG 2 cut(s) 516, 713
AflIII ACRYGT 2 cut(s) 566, 819
AhlI ACTAGT 1 cut(s) 416
AjiI CACGTC 1 cut(s) 1348
AjnI CCWGG 2 cut(s) 85, 265
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
AluBI AGCT 9 cut(s) 54, 589, 769, 852, 922, 1130, 1137, 1196, 1262
AluI AGCT 9 cut(s) 54, 589, 769, 852, 922, 1130, 1137, 1196, 1262
Alw21I GWGCWC 2 cut(s) 13, 1369
Alw26I GTCTC 4 cut(s) 113, 358, 762, 1093
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 2 cut(s) 166, 1138
AoxI GGCC 3 cut(s) 318, 530, 946
ApeKI GCWGC 4 cut(s) 262, 506, 849, 1240
ApoI RAATTY 3 cut(s) 481, 904, 1028
Asp700I GAANNNNTTC 2 cut(s) 440, 485
AsuHPI GGTGA 4 cut(s) 207, 668, 816, 995
AvaI CYCGRG 2 cut(s) 166, 1138
BalI TGGCCA 2 cut(s) 320, 532
BanII GRGCYC 2 cut(s) 794, 1109
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 13, 1369
BbvI GCAGC 4 cut(s) 249, 493, 861, 1227
BccI CCATC 5 cut(s) 625, 647, 685, 1147, 1226
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 87, 267
BciVI GTATCC 1 cut(s) 929
BcoDI GTCTC 4 cut(s) 113, 358, 762, 1093
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 4 cut(s) 417, 855, 930, 1134
BfuI GTATCC 1 cut(s) 929
BisI GCNGC 5 cut(s) 263, 507, 850, 1227, 1241
BlsI GCNGC 5 cut(s) 264, 508, 851, 1228, 1242
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 87, 267
BmeT110I CYCGRG 2 cut(s) 166, 1138
BmgBI CACGTC 1 cut(s) 1348
BmiI GGNNCC 2 cut(s) 47, 793
BmrFI CCNGG 2 cut(s) 87, 267
BmsI GCATC 1 cut(s) 1365
BpiI GAAGAC 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 108, 511
BsaBI GATNNNNATC 1 cut(s) 1355
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 596, 1109
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 713
Bse1I ACTGG 3 cut(s) 10, 79, 1378
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 1355
BseBI CCWGG 2 cut(s) 87, 267
BseDI CCNNGG 2 cut(s) 596, 1109
BseGI GGATG 6 cut(s) 208, 541, 613, 658, 1064, 1396
BseJI GATNNNNATC 1 cut(s) 1355
BseLI CCNNNNNNNGG 2 cut(s) 516, 713
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 3 cut(s) 10, 79, 1378
BseXI GCAGC 4 cut(s) 249, 493, 861, 1227
BsgI GTGCAG 1 cut(s) 1226
Bsh1236I CGCG 1 cut(s) 1291
Bsh1285I CGRYCG 1 cut(s) 1295
BshFI GGCC 3 cut(s) 320, 532, 948
BsiEI CGRYCG 1 cut(s) 1295
BsiHKAI GWGCWC 2 cut(s) 13, 1369
BsiHKCI CYCGRG 2 cut(s) 166, 1138
BslFI GGGAC 1 cut(s) 1328
BslI CCNNNNNNNGG 2 cut(s) 516, 713
BsmAI GTCTC 4 cut(s) 113, 358, 762, 1093
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 1328
BsnI GGCC 3 cut(s) 320, 532, 948
BsoBI CYCGRG 2 cut(s) 166, 1138
Bsp1286I GDGCHC 4 cut(s) 13, 794, 1109, 1369
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 77, 1014
BspACI CCGC 2 cut(s) 1226, 1291
BspANI GGCC 3 cut(s) 320, 532, 948
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 1291
BspLI GGNNCC 2 cut(s) 47, 793
BspPI GGATC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 726
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 3 cut(s) 10, 79, 1378
BssECI CCNNGG 2 cut(s) 596, 1109
BssMI GATC 2 cut(s) 77, 1014
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 596, 1109
Bst2UI CCWGG 2 cut(s) 87, 267
Bst4CI ACNGT 3 cut(s) 45, 537, 1119
Bst6I CTCTTC 1 cut(s) 900
BstACI GRCGYC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 3 cut(s) 746, 1159, 1238
BstDEI CTNAG 2 cut(s) 117, 1385
BstF5I GGATG 6 cut(s) 208, 541, 613, 658, 1064, 1396
BstFNI CGCG 1 cut(s) 1291
BstKTI GATC 2 cut(s) 80, 1017
BstMAI GTCTC 4 cut(s) 113, 358, 762, 1093
BstMBI GATC 2 cut(s) 77, 1014
BstMCI CGRYCG 1 cut(s) 1295
BstMWI GCNNNNNNNGC 2 cut(s) 745, 1031
BstNI CCWGG 2 cut(s) 87, 267
BstNSI RCATGY 2 cut(s) 570, 823
BstSCI CCNGG 2 cut(s) 85, 265
BstUI CGCG 1 cut(s) 1291
BstV1I GCAGC 4 cut(s) 249, 493, 861, 1227
BstV2I GAAGAC 1 cut(s) 513
BsuI GTATCC 1 cut(s) 929
BsuRI GGCC 3 cut(s) 320, 532, 948
BtgZI GCGATG 1 cut(s) 1353
BtrI CACGTC 1 cut(s) 1348
BtsCI GGATG 6 cut(s) 208, 541, 613, 658, 1064, 1396
BtsI GCAGTG 1 cut(s) 976
BtsIMutI CAGTG 3 cut(s) 533, 976, 1333
Cac8I GCNNGC 3 cut(s) 746, 1159, 1238
Csp6I GTAC 2 cut(s) 340, 425
CviAII CATG 9 cut(s) 81, 567, 677, 708, 820, 899, 1076, 1246, 1303
CviQI GTAC 2 cut(s) 340, 425
DdeI CTNAG 2 cut(s) 117, 1385
DpnI GATC 2 cut(s) 79, 1016
DpnII GATC 2 cut(s) 77, 1014
EaeI YGGCCR 2 cut(s) 318, 530
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Eco130I CCWWGG 2 cut(s) 596, 1109
Eco147I AGGCCT 1 cut(s) 948
Eco24I GRGCYC 2 cut(s) 794, 1109
Eco88I CYCGRG 2 cut(s) 166, 1138
EcoRII CCWGG 2 cut(s) 85, 265
EcoT14I CCWWGG 2 cut(s) 596, 1109
EcoT22I ATGCAT 1 cut(s) 713
EcoT38I GRGCYC 2 cut(s) 794, 1109
ErhI CCWWGG 2 cut(s) 596, 1109
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 9 cut(s) 84, 570, 680, 711, 823, 902, 1079, 1249, 1306
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 779, 811
FaqI GGGAC 1 cut(s) 1328
FatI CATG 9 cut(s) 80, 566, 676, 707, 819, 898, 1075, 1245, 1302
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 5 cut(s) 263, 507, 850, 1227, 1241
FokI GGATG 6 cut(s) 195, 528, 600, 665, 1051, 1403
FriOI GRGCYC 2 cut(s) 794, 1109
Fsp4HI GCNGC 5 cut(s) 263, 507, 850, 1227, 1241
FspBI CTAG 4 cut(s) 417, 855, 930, 1134
GluI GCNGC 5 cut(s) 263, 507, 850, 1227, 1241
HaeIII GGCC 3 cut(s) 320, 532, 948
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 9 cut(s) 84, 570, 680, 711, 823, 902, 1079, 1249, 1306
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HindIII AAGCTT 2 cut(s) 587, 767
HinfI GANTC 2 cut(s) 121, 1351
HphI GGTGA 4 cut(s) 207, 668, 816, 995
Hpy166II GTNNAC 3 cut(s) 425, 427, 1201
Hpy188I TCNGA 3 cut(s) 480, 644, 784
Hpy188III TCNNGA 9 cut(s) 18, 125, 242, 272, 433, 490, 650, 1140, 1169
Hpy8I GTNNAC 3 cut(s) 425, 427, 1201
HpyAV CCTTC 3 cut(s) 89, 222, 1305
HpyCH4III ACNGT 3 cut(s) 45, 537, 1119
HpyCH4IV ACGT 4 cut(s) 329, 963, 979, 1347
HpyCH4V TGCA 9 cut(s) 66, 112, 335, 711, 836, 849, 863, 1034, 1243
HpyF10VI GCNNNNNNNGC 2 cut(s) 745, 1031
HpyF3I CTNAG 2 cut(s) 117, 1385
HpySE526I ACGT 4 cut(s) 329, 963, 979, 1347
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 9 cut(s) 84, 570, 680, 711, 823, 902, 1079, 1249, 1306
Kzo9I GATC 2 cut(s) 77, 1014
LmnI GCTCC 2 cut(s) 716, 797
Lsp1109I GCAGC 4 cut(s) 249, 493, 861, 1227
LweI GCATC 1 cut(s) 1365
MaeI CTAG 4 cut(s) 417, 855, 930, 1134
MaeII ACGT 4 cut(s) 329, 963, 979, 1347
MaeIII GTNAC 5 cut(s) 199, 537, 667, 801, 822
MalI GATC 2 cut(s) 79, 1016
MboI GATC 2 cut(s) 77, 1014
MboII GAAGA 7 cut(s) 202, 249, 513, 700, 884, 887, 992
MhlI GDGCHC 4 cut(s) 13, 794, 1109, 1369
MlsI TGGCCA 2 cut(s) 320, 532
MluCI AATT 9 cut(s) 107, 286, 314, 455, 481, 553, 884, 904, 1028
MluNI TGGCCA 2 cut(s) 320, 532
MlyI GAGTC 1 cut(s) 115
Mox20I TGGCCA 2 cut(s) 320, 532
Mph1103I ATGCAT 1 cut(s) 713
MroXI GAANNNNTTC 2 cut(s) 440, 485
MscI TGGCCA 2 cut(s) 320, 532
MseI TTAA 2 cut(s) 887, 1212
MslI CAYNNNNRTG 2 cut(s) 220, 471
Msp20I TGGCCA 2 cut(s) 320, 532
MspA1I CMGCKG 1 cut(s) 1196
MspR9I CCNGG 2 cut(s) 87, 267
MvaI CCWGG 2 cut(s) 87, 267
MvnI CGCG 1 cut(s) 1291
MwoI GCNNNNNNNGC 2 cut(s) 745, 1031
NdeI CATATG 1 cut(s) 221
NdeII GATC 2 cut(s) 77, 1014
NlaIII CATG 9 cut(s) 84, 570, 680, 711, 823, 902, 1079, 1249, 1306
NlaIV GGNNCC 2 cut(s) 47, 793
NmuCI GTSAC 1 cut(s) 822
NsiI ATGCAT 1 cut(s) 713
NspI RCATGY 2 cut(s) 570, 823
PaeR7I CTCGAG 2 cut(s) 166, 1138
PceI AGGCCT 1 cut(s) 948
PciI ACATGT 2 cut(s) 566, 819
PdmI GAANNNNTTC 2 cut(s) 440, 485
PfeI GAWTC 1 cut(s) 1351
PkrI GCNGC 5 cut(s) 264, 508, 851, 1228, 1242
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 2 cut(s) 566, 819
PsiI TTATAA 1 cut(s) 360
Psp1406I AACGTT 1 cut(s) 979
Psp6I CCWGG 2 cut(s) 85, 265
PspGI CCWGG 2 cut(s) 85, 265
PspN4I GGNNCC 2 cut(s) 47, 793
PspXI VCTCGAGB 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 1196
RsaI GTAC 2 cut(s) 341, 426
RsaNI GTAC 2 cut(s) 340, 425
RseI CAYNNNNRTG 2 cut(s) 220, 471
SaqAI TTAA 2 cut(s) 887, 1212
SatI GCNGC 5 cut(s) 263, 507, 850, 1227, 1241
Sau3AI GATC 2 cut(s) 77, 1014
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 87, 267
SduI GDGCHC 4 cut(s) 13, 794, 1109, 1369
SfaNI GCATC 1 cut(s) 1365
Sfr274I CTCGAG 2 cut(s) 166, 1138
SlaI CTCGAG 2 cut(s) 166, 1138
SmiMI CAYNNNNRTG 2 cut(s) 220, 471
SmlI CTYRAG 4 cut(s) 123, 166, 490, 1138
SmoI CTYRAG 4 cut(s) 123, 166, 490, 1138
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 9 cut(s) 107, 286, 314, 455, 481, 553, 884, 904, 1028
SseBI AGGCCT 1 cut(s) 948
SsiI CCGC 2 cut(s) 1226, 1291
SspMI CTAG 4 cut(s) 417, 855, 930, 1134
StuI AGGCCT 1 cut(s) 948
StyD4I CCNGG 2 cut(s) 85, 265
StyI CCWWGG 2 cut(s) 596, 1109
TaaI ACNGT 3 cut(s) 45, 537, 1119
TaiI ACGT 4 cut(s) 332, 966, 982, 1350
TaqI TCGA 5 cut(s) 167, 469, 807, 879, 1139
TasI AATT 9 cut(s) 107, 286, 314, 455, 481, 553, 884, 904, 1028
TatI WGTACW 2 cut(s) 339, 424
TauI GCSGC 1 cut(s) 1229
TfiI GAWTC 1 cut(s) 1351
Tru1I TTAA 2 cut(s) 887, 1212
Tru9I TTAA 2 cut(s) 887, 1212
TscAI CASTG 3 cut(s) 540, 976, 1333
TseFI GTSAC 1 cut(s) 822
TseI GCWGC 4 cut(s) 262, 506, 849, 1240
Tsp45I GTSAC 1 cut(s) 822
TspDTI ATGAA 6 cut(s) 150, 360, 693, 887, 1053, 1319
TspGWI ACGGA 2 cut(s) 320, 750
TspRI CASTG 3 cut(s) 540, 976, 1333
XapI RAATTY 3 cut(s) 481, 904, 1028
XceI RCATGY 2 cut(s) 570, 823
XhoI CTCGAG 2 cut(s) 166, 1138
XmnI GAANNNNTTC 2 cut(s) 440, 485
XspI CTAG 4 cut(s) 417, 855, 930, 1134
ZraI GACGTC 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.