Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Reverse (-)

9882947 .. 9893499

Gene Structure 10553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17100.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGGCAGCTATCTCCGAGCGGGTCGAGCTCGCCAAGCTCTGCAGCTCGCGCGACTGGTCCAAGGCCATCCGAGTCCTCGACTCGCTCCTCTCCAGCTCCTCTTCCATCCAGGACATCTGCAACAGAGCCTTCTGTTACAGCCAACTGGAGCTGCACAAGCATGTGGTGAAGGATTGCGATAGGGCGCTTCAGCTCGACCCCGCGCTCCTTCAAGCTTACATTTTCAAAGGTCGTGCGTTTTCTGCTCTTGGAAGGAAAGAGGATGCTATTTTGGTTTGGGAGCAGGGGTATGAGCATGCATTGCGTCAGTCTGCAGATTTGAAGCAATTGCTAGAGCTGAAAGAGCTCTTATCAACTGCAGAACAGGAAAAAGGGGAAAACAAAAACCATGCAACAGAGGCTGTGTCAGCTACGCTTTTATCTGAATCCAGACCACATGTGAATGGGATATCAAGTGAAACTTGTACGGATCAAAGTAATTTGAGTGATCAATCCCAATTACACAGTGAATCAACCACTGAGGTTCATAGCAAGTCTAATGATAACATGTGCAATGGAGAAGTTGATAAGGCCAAGGGAAAGAAGAAGTTTGATAGCCAAACAAATGGAAACCATGACAGCTCTCGTGAATCACCTAGTACATCTGAGGTTCAGAGCAAGTCCATTGAGAACAGATGTATAGGTGCTAAAGCCAGAGGGAAGAAGAAGTCTGACAGCCAAATGAATGAAAATCATGATACTGACAGAAAATTGAGTAATGAATCTGAAGCATGTAATGACTTAAGTGATAGATGCAACAAGTTGCCCTTGATTTGTAGTAAATCAAGTGATTTAGCTGAAAGTCCCCTCACTCCCCCCAAGTTAAGTAGTAAATCTGAAATGCGTGACGAGTCCAAGAAAAATAAAAAGTTCTGTTTTACCAGAATTTCAAAGTCCAAGTCAATAAGTGTGGATTTTCGACTGTCAAGGGGTATAGCGGAGGTTAATGAAGGGAAATATACTCATGCCATATCTATATTTGACCAGATATTGAAAGAGGATCCTAACTATCCAGAGGCACTAATAGGAAGGGGAACAGCATATGCTTTCCAACGAGAACTTATGGCTGCAATAGCTGATTTTACAAAGGCCATGGAAACAAATCCATCAGCTGCTGAGGCATGGAAAAGGAGAGGGCAGGCACGAGCTGCCCTGGGAGAATTTACCGAGGCCATTGAAGATCTGTCCAAGGCATTAGAGTTTGAACCAAATTCAGCAGATATTCTACATGAAAGGGGTATTGCCAATTTCAAGTTCAAGGATTTCTATACTGCTGTTGAAGACCTATCTGCCTGCGTGAAACTTGATAAGGATAACACATCTGCATACACATATTTGGGTTTGGCGTTATCATCTATTGGTGAATATAAAAGAGCTGAGGAGGCGCATTTAAAAGCAATTCAGCTGGATCGGAATTTCCTTGAGGCATGGGTGCAGTTAACCCAGTTCTATCAAGATATGGCAAACCCAAACAAGGCTTTCGAATGTCTTCACCAAGCTCTACAAATTGATGGGAGGTTTGCCAAAGCATATCATTTGCGAGGTCTACTGCTGCATGGGATGGGAGAACACAGCAAAGCTATTAAAGAGTTGTCAACTGGGTTGAATATTGAGAGTGCAAATATCGAGTGTTTGTATTTGCGGGCTTCCTGCTACCATGCGATTGGAGAATATAAACCAGCGGTCAAGGACTATGATGCCGTGCTAGATTTGGAACTAGACTCAATGGAGAAGTTTGTGCTGCAATGCCTGGCTTTTTATCAGAAAGAGATTGCTCTGTACACGGCATCAAAACTCAACAGTGAATTTGTCTGCTTTGATATTGATGGAGATATTGATTCTCTTTTCAAGGAGTACTGGTGCAAAAGATTGCACCCCAAGAATGTGTGCGAAAAGGTTTACCGGCAACCCCCCCTGCGTGAATCTTTAAAGAAGAACAAGCTTAAAAAGCTAGATTTTTCAGTCACAAAGCAGAGTACTGCTCTTCTGCAAGCTGCTGATTGCATTGGGGAGAAAATCCAATATGATTGCCCTGGTTTCTTACCAAATAGGCGACAGCATCGTATGGCAGGATTGGCTGCTATTGAAGTTGCACAGAAGGTCTCCAAGGCGTGGCGTTCCTTTCAAGCGGAATGGAAATACTCGAATAAAAGCACATCCAAGAATGGCAAGCGACCGAGGAGAAGGGAAAGAATCAATTTGCAAAGCCAGAATAGAGGTGGTGCTGGGTGTAGCACTAGCAGCTCCTCAGACACAACTTCTTATGGCATTACACAGTCAAAATCAACAGGCCGGTTTATGATGTCATGGCATGATGTTTATTCAGTGGCTGTGAAATGGCGGCAGATTTCTGAACCTTGTGACCCGGTTGTGTGGATTAACAAGCTAAGTGAAGAGTTTAATGCTGGATTTGGGTCTCATACACCAATTATCCTTGGACAAGCAAGAGTTGTTCGCTATTTCCCAAATTTTGAAAGGACCTTTGATGTCGCAAAGACTATCATGAACGACAGAAAGTATGTGCATAACAAGGCAGATGGCCTGATTGATCTATCCAGGGACGGGAAATTGCAAGACGTTATGCATGCAAAATCTTGTGCTGATCTGTATAAAGCTGTTGGTGAGGACTTCTGGTTGGCTACTTGGTGTAATAGTGCTGCCTTTGAGGGGAAGTATCTTGAAGGGACGAGGATTACCCTCGTAAAATTGGCGGAGCAGAAATATGACTTTGCAATCAGAACACCTTGCACACCTGCTAGATGGGATGAATTTGATGCAGAAATGGCAATGGCATGGGAAGATATATGCAATGCCTATTGCGGTGAAAATTATGGGTCTACCGACTTCAATGTGCTTGAAAAAGTGAGAGATGCAATTTTAAGGATGACATATTACTGGTACAATTTTATGCCCCTTTCAAGAGGCTCCGCAGCTGTTGGGTTCGTGGTTATGCTTGGACTGTTTCTTGCTGCTAATATGGAGTTCACAGGAACTATCCCTCAAGGTTTACAGGTCGACTGGGAAGCCATTTTGACCGTTGATCCGAACAATTTTGTGGATTCGATCAAGAGTTGGTTATATCCATCACTCAAGGTAACGACATCCTTGAAAGATTATCCGGATGTGGGAACGACTCTTCAAACAACAGGTTCAGTTGTCGCTGCTCTAAGCACTTATAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

1075

Amino Acids

120.89

Weight (kDa)

6.67

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	357 - 418	2.2e-07	Tetratricopeptide repeat
TPR_1	PF00515	385 - 417	8.9e-08	Tetratricopeptide repeat
TPR_2	PF07719	385 - 417	5.9e-06	Tetratricopeptide repeat
TPR_11	PF13414	392 - 431	7e-08	TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3216
AarI	CACCTGC	1 cut(s)	2800
Acc36I	ACCTGC	1 cut(s)	2800
AccB7I	CCANNNNNTGG	1 cut(s)	2151
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	3 cut(s)	1585, 2876, 3054
AccII	CGCG	3 cut(s)	49, 51, 203
AccIII	TCCGGA	1 cut(s)	3157
AclWI	GGATC	5 cut(s)	477, 1034, 1047, 1455, 3074
AcsI	RAATTY	7 cut(s)	924, 1199, 1249, 1453, 1844, 2506, 2807
AcuI	CTGAAG	2 cut(s)	173, 786
AfaI	GTAC	6 cut(s)	466, 640, 1820, 1895, 2017, 2939
AfiI	CCNNNNNNNGG	5 cut(s)	1513, 2151, 2601, 2706, 3164
AflII	CTTAAG	1 cut(s)	781
AflIII	ACRYGT	2 cut(s)	436, 546
AjnI	CCWGG	5 cut(s)	108, 1191, 1788, 2071, 2594
AjuI	GAANNNNNNNTTGG	2 cut(s)	1277, 1309
Alw21I	GWGCWC	2 cut(s)	30, 348
Alw26I	GTCTC	2 cut(s)	2146, 2460
AlwI	GGATC	5 cut(s)	477, 1034, 1047, 1455, 3074
AlwNI	CAGNNNCTG	3 cut(s)	401, 1154, 2369
Aor13HI	TCCGGA	1 cut(s)	3157
AoxI	GGCC	6 cut(s)	63, 570, 1128, 1209, 2329, 2578
ApoI	RAATTY	7 cut(s)	924, 1199, 1249, 1453, 1844, 2506, 2807
ArsI	GACNNNNNNTTYG	2 cut(s)	923, 955
Asp700I	GAANNNNTTC	1 cut(s)	1527
AspLEI	GCGC	4 cut(s)	51, 187, 205, 1426
AspS9I	GGNCC	2 cut(s)	57, 2517
AsuC2I	CCSGG	1 cut(s)	2405
AsuHPI	GGTGA	6 cut(s)	178, 624, 1412, 1523, 2672, 2873
AsuII	TTCGAA	1 cut(s)	1521
AvaII	GGWCC	2 cut(s)	57, 2517
BamHI	GGATCC	1 cut(s)	1039
BanII	GRGCYC	2 cut(s)	30, 348
BauI	CACGAG	2 cut(s)	624, 1182
BbsI	GAAGAC	2 cut(s)	1326, 1520
Bbv12I	GWGCWC	2 cut(s)	30, 348
BbvCI	CCTCAGC	2 cut(s)	1155, 1416
BccI	CCATC	9 cut(s)	74, 113, 1153, 1544, 1594, 1859, 2570, 2793, 3130
BceAI	ACGGC	2 cut(s)	1724, 1839
BciT130I	CCWGG	5 cut(s)	110, 1193, 1790, 2073, 2596
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	2405
BcoDI	GTCTC	2 cut(s)	2146, 2460
BfaI	CTAG	7 cut(s)	332, 636, 1745, 1757, 1991, 2277, 2796
BfmI	CTRYAG	3 cut(s)	40, 312, 357
BfoI	RGCGCY	1 cut(s)	188
BfrI	CTTAAG	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	2800
BglII	AGATCT	1 cut(s)	1219
BmcAI	AGTACT	2 cut(s)	1895, 2017
Bme1390I	CCNGG	6 cut(s)	110, 1193, 1790, 2073, 2405, 2596
Bme18I	GGWCC	2 cut(s)	57, 2517
BmgT120I	GGNCC	2 cut(s)	57, 2517
BmiI	GGNNCC	2 cut(s)	1041, 2965
BmrFI	CCNGG	6 cut(s)	110, 1193, 1790, 2073, 2405, 2596
BmrI	ACTGGG	3 cut(s)	1477, 1647, 3067
BmsI	GCATC	7 cut(s)	253, 782, 1726, 1835, 2107, 2803, 2899
BmuI	ACTGGG	3 cut(s)	1477, 1647, 3067
BpiI	GAAGAC	2 cut(s)	1326, 1520
BplI	GAGNNNNNCTC	2 cut(s)	2005, 2037
BpmI	CTGGAG	2 cut(s)	76, 167
Bpu10I	CCTNAGC	2 cut(s)	1155, 1416
Bpu14I	TTCGAA	1 cut(s)	1521
BpuEI	CTTGAG	3 cut(s)	1481, 3024, 3113
BpuMI	CCSGG	1 cut(s)	2405
BsaI	GGTCTC	2 cut(s)	2146, 2460
BsaWI	WCCGGW	1 cut(s)	3157
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 1883, 1913
Bsc4I	CCNNNNNNNGG	5 cut(s)	1513, 2151, 2601, 2706, 3164
Bse118I	RCCGGY	2 cut(s)	1941, 2331
Bse1I	ACTGG	7 cut(s)	59, 150, 1483, 1642, 1901, 2939, 3062
Bse3DI	GCAATG	5 cut(s)	299, 559, 1790, 2832, 2854
BseAI	TCCGGA	1 cut(s)	3157
BseBI	CCWGG	5 cut(s)	110, 1193, 1790, 2073, 2596
BseGI	GGATG	9 cut(s)	66, 105, 268, 1605, 2195, 2809, 2928, 3140, 3166
BseLI	CCNNNNNNNGG	5 cut(s)	1513, 2151, 2601, 2706, 3164
BseMI	GCAATG	5 cut(s)	299, 559, 1790, 2832, 2854
BseMII	CTCAG	5 cut(s)	510, 636, 1146, 1407, 2301
BseNI	ACTGG	7 cut(s)	59, 150, 1483, 1642, 1901, 2939, 3062
BseRI	GAGGAG	5 cut(s)	77, 88, 1433, 2233, 2275
BseYI	CCCAGC	1 cut(s)	2264
BsgI	GTGCAG	2 cut(s)	137, 1493
Bsh1236I	CGCG	3 cut(s)	49, 51, 203
Bsh1285I	CGRYCG	1 cut(s)	2216
BshFI	GGCC	6 cut(s)	65, 572, 1130, 1211, 2331, 2580
BsiEI	CGRYCG	1 cut(s)	2216
BsiHKAI	GWGCWC	2 cut(s)	30, 348
BsiSI	CCGG	4 cut(s)	1942, 2332, 2405, 3158
BslFI	GGGAC	3 cut(s)	828, 2612, 2737
BslI	CCNNNNNNNGG	5 cut(s)	1513, 2151, 2601, 2706, 3164
BsmAI	GTCTC	2 cut(s)	2146, 2460
BsmFI	GGGAC	3 cut(s)	828, 2612, 2737
BsnI	GGCC	6 cut(s)	65, 572, 1130, 1211, 2331, 2580
Bso31I	GGTCTC	2 cut(s)	2146, 2460
Bsp119I	TTCGAA	1 cut(s)	1521
Bsp1286I	GDGCHC	2 cut(s)	30, 348
Bsp13I	TCCGGA	1 cut(s)	3157
Bsp1407I	TGTACA	1 cut(s)	1818
Bsp143I	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
Bsp19I	CCATGG	1 cut(s)	1131
BspANI	GGCC	6 cut(s)	65, 572, 1130, 1211, 2331, 2580
BspCNI	CTCAG	5 cut(s)	511, 637, 1147, 1408, 2300
BspEI	TCCGGA	1 cut(s)	3157
BspFNI	CGCG	3 cut(s)	49, 51, 203
BspHI	TCATGA	2 cut(s)	733, 2541
BspLI	GGNNCC	2 cut(s)	1041, 2965
BspMAI	CTGCAG	3 cut(s)	44, 316, 361
BspMI	ACCTGC	1 cut(s)	2800
BspPI	GGATC	5 cut(s)	477, 1034, 1047, 1455, 3074
BspQI	GCTCTTC	1 cut(s)	2028
BspT104I	TTCGAA	1 cut(s)	1521
BspTI	CTTAAG	1 cut(s)	781
BspTNI	GGTCTC	2 cut(s)	2146, 2460
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	5 cut(s)	299, 559, 1790, 2832, 2854
BsrFI	RCCGGY	2 cut(s)	1941, 2331
BsrGI	TGTACA	1 cut(s)	1818
BsrI	ACTGG	7 cut(s)	59, 150, 1483, 1642, 1901, 2939, 3062
BssAI	RCCGGY	2 cut(s)	1941, 2331
BssMI	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
BssSI	CACGAG	2 cut(s)	624, 1182
BssT1I	CCWWGG	6 cut(s)	60, 573, 1131, 1227, 2145, 2473
Bst2BI	CACGAG	2 cut(s)	624, 1182
Bst2UI	CCWGG	5 cut(s)	110, 1193, 1790, 2073, 2596
Bst4CI	ACNGT	6 cut(s)	506, 963, 1841, 2316, 3000, 3076
Bst6I	CTCTTC	4 cut(s)	106, 2028, 2427, 3180
BstAFI	CTTAAG	1 cut(s)	781
BstAPI	GCANNNNNTGC	2 cut(s)	301, 1187
BstAUI	TGTACA	1 cut(s)	1818
BstBI	TTCGAA	1 cut(s)	1521
BstC8I	GCNNGC	9 cut(s)	30, 47, 297, 1179, 1333, 1683, 2031, 2210, 2625
BstDEI	CTNAG	7 cut(s)	519, 645, 1155, 1416, 2287, 2426, 3206
BstDSI	CCRYGG	1 cut(s)	1131
BstF5I	GGATG	9 cut(s)	66, 105, 268, 1605, 2195, 2809, 2928, 3140, 3166
BstFNI	CGCG	3 cut(s)	49, 51, 203
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	4 cut(s)	51, 187, 205, 1426
BstKTI	GATC	9 cut(s)	472, 490, 1042, 1222, 1450, 2590, 2644, 3082, 3105
BstMAI	GTCTC	2 cut(s)	2146, 2460
BstMBI	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
BstMCI	CGRYCG	1 cut(s)	2216
BstNI	CCWGG	5 cut(s)	110, 1193, 1790, 2073, 2596
BstNSI	RCATGY	6 cut(s)	164, 299, 440, 550, 774, 2627
BstSCI	CCNGG	6 cut(s)	108, 1191, 1788, 2071, 2403, 2594
BstSFI	CTRYAG	3 cut(s)	40, 312, 357
BstUI	CGCG	3 cut(s)	49, 51, 203
BstV2I	GAAGAC	2 cut(s)	1326, 1520
BstX2I	RGATCY	2 cut(s)	1039, 1219
BstXI	CCANNNNNNTGG	2 cut(s)	605, 1703
BstYI	RGATCY	2 cut(s)	1039, 1219
BsuRI	GGCC	6 cut(s)	65, 572, 1130, 1211, 2331, 2580
BtgI	CCRYGG	1 cut(s)	1131
BtsCI	GGATG	9 cut(s)	66, 105, 268, 1605, 2195, 2809, 2928, 3140, 3166
BtsIMutI	CAGTG	4 cut(s)	511, 516, 1846, 2370
BveI	ACCTGC	1 cut(s)	2800
Cac8I	GCNNGC	9 cut(s)	30, 47, 297, 1179, 1333, 1683, 2031, 2210, 2625
CaiI	CAGNNNCTG	3 cut(s)	401, 1154, 2369
CciI	TCATGA	2 cut(s)	733, 2541
CfoI	GCGC	4 cut(s)	51, 187, 205, 1426
Cfr10I	RCCGGY	2 cut(s)	1941, 2331
Cfr13I	GGNCC	2 cut(s)	57, 2517
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	6 cut(s)	465, 639, 1819, 1894, 2016, 2938
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviQI	GTAC	6 cut(s)	465, 639, 1819, 1894, 2016, 2938
DdeI	CTNAG	7 cut(s)	519, 645, 1155, 1416, 2287, 2426, 3206
DpnI	GATC	9 cut(s)	471, 489, 1041, 1221, 1449, 2589, 2643, 3081, 3104
DpnII	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
DraI	TTTAAA	2 cut(s)	1431, 1968
Eam1104I	CTCTTC	4 cut(s)	106, 2028, 2427, 3180
EarI	CTCTTC	4 cut(s)	106, 2028, 2427, 3180
EciI	GGCGGA	1 cut(s)	2765
Ecl136II	GAGCTC	2 cut(s)	28, 346
Eco130I	CCWWGG	6 cut(s)	60, 573, 1131, 1227, 2145, 2473
Eco24I	GRGCYC	2 cut(s)	30, 348
Eco31I	GGTCTC	2 cut(s)	2146, 2460
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	57, 2517
Eco53kI	GAGCTC	2 cut(s)	28, 346
Eco57I	CTGAAG	2 cut(s)	173, 786
EcoICRI	GAGCTC	2 cut(s)	28, 346
EcoO109I	RGGNCCY	1 cut(s)	2517
EcoRII	CCWGG	5 cut(s)	108, 1191, 1788, 2071, 2594
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	6 cut(s)	60, 573, 1131, 1227, 2145, 2473
EcoT22I	ATGCAT	2 cut(s)	301, 2625
EcoT38I	GRGCYC	2 cut(s)	30, 348
ErhI	CCWWGG	6 cut(s)	60, 573, 1131, 1227, 2145, 2473
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 791, 823
FaqI	GGGAC	3 cut(s)	828, 2612, 2737
FauI	CCCGC	3 cut(s)	12, 208, 1674
FauNDI	CATATG	1 cut(s)	1081
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	3 cut(s)	1585, 2876, 3054
FokI	GGATG	9 cut(s)	53, 92, 275, 1612, 2182, 2816, 2935, 3127, 3173
FriOI	GRGCYC	2 cut(s)	30, 348
FspBI	CTAG	7 cut(s)	332, 636, 1745, 1757, 1991, 2277, 2796
GlaI	GCGC	4 cut(s)	50, 186, 204, 1425
GsaI	CCCAGC	1 cut(s)	2268
GsuI	CTGGAG	2 cut(s)	76, 167
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	6 cut(s)	65, 572, 1130, 1211, 2331, 2580
HapII	CCGG	4 cut(s)	1942, 2332, 2405, 3158
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	4 cut(s)	51, 187, 205, 1426
Hin6I	GCGC	4 cut(s)	49, 185, 203, 1424
HinP1I	GCGC	4 cut(s)	49, 185, 203, 1424
HincII	GTYRAC	3 cut(s)	1479, 1635, 3055
HindII	GTYRAC	3 cut(s)	1479, 1635, 3055
HindIII	AAGCTT	2 cut(s)	213, 1979
HpaI	GTTAAC	1 cut(s)	1479
HpaII	CCGG	4 cut(s)	1942, 2332, 2405, 3158
HphI	GGTGA	6 cut(s)	178, 624, 1412, 1523, 2672, 2873
Hpy166II	GTNNAC	9 cut(s)	1479, 1586, 1635, 1821, 1939, 2877, 3024, 3047, 3055
Hpy8I	GTNNAC	9 cut(s)	1479, 1586, 1635, 1821, 1939, 2877, 3024, 3047, 3055
HpyAV	CCTTC	9 cut(s)	139, 163, 218, 246, 983, 1062, 2131, 2217, 2714
HpyCH4III	ACNGT	6 cut(s)	506, 963, 1841, 2316, 3000, 3076
HpyCH4IV	ACGT	1 cut(s)	2616
HpyF3I	CTNAG	7 cut(s)	519, 645, 1155, 1416, 2287, 2426, 3206
HpySE526I	ACGT	1 cut(s)	2616
HspAI	GCGC	4 cut(s)	49, 185, 203, 1424
Kpn2I	TCCGGA	1 cut(s)	3157
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	1479
Kzo9I	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
LguI	GCTCTTC	1 cut(s)	2028
LmnI	GCTCC	8 cut(s)	90, 101, 148, 210, 280, 2288, 2752, 2969
LweI	GCATC	7 cut(s)	253, 782, 1726, 1835, 2107, 2803, 2899
MaeI	CTAG	7 cut(s)	332, 636, 1745, 1757, 1991, 2277, 2796
MaeII	ACGT	1 cut(s)	2616
MaeIII	GTNAC	5 cut(s)	134, 884, 2002, 2399, 3133
MalI	GATC	9 cut(s)	471, 489, 1041, 1221, 1449, 2589, 2643, 3081, 3104
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	2 cut(s)	1039, 1219
MhlI	GDGCHC	2 cut(s)	30, 348
MlyI	GAGTC	5 cut(s)	74, 81, 899, 1754, 3166
MmeI	TCCRAC	1 cut(s)	1114
Mph1103I	ATGCAT	2 cut(s)	301, 2625
MroI	TCCGGA	1 cut(s)	3157
MroXI	GAANNNNTTC	1 cut(s)	1527
MslI	CAYNNNNRTG	2 cut(s)	159, 441
MspA1I	CMGCKG	4 cut(s)	1151, 1444, 1721, 2972
MspCI	CTTAAG	1 cut(s)	781
MspI	CCGG	4 cut(s)	1942, 2332, 2405, 3158
MspR9I	CCNGG	6 cut(s)	110, 1193, 1790, 2073, 2405, 2596
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	5 cut(s)	110, 1193, 1790, 2073, 2596
MvnI	CGCG	3 cut(s)	49, 51, 203
NciI	CCSGG	1 cut(s)	2405
NcoI	CCATGG	1 cut(s)	1131
NdeI	CATATG	1 cut(s)	1081
NdeII	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
NlaIV	GGNNCC	2 cut(s)	1041, 2965
NmuCI	GTSAC	3 cut(s)	884, 2002, 2399
NsiI	ATGCAT	2 cut(s)	301, 2625
NspI	RCATGY	6 cut(s)	164, 299, 440, 550, 774, 2627
NspV	TTCGAA	1 cut(s)	1521
PaeI	GCATGC	2 cut(s)	299, 2627
PagI	TCATGA	2 cut(s)	733, 2541
PaqCI	CACCTGC	1 cut(s)	2800
PasI	CCCWGGG	1 cut(s)	1192
PciI	ACATGT	2 cut(s)	436, 546
PciSI	GCTCTTC	1 cut(s)	2028
PdmI	GAANNNNTTC	1 cut(s)	1527
PfeI	GAWTC	8 cut(s)	425, 509, 629, 761, 1877, 1961, 2232, 3098
PflMI	CCANNNNNTGG	1 cut(s)	2151
PfoI	TCCNGGA	1 cut(s)	108
PleI	GAGTC	5 cut(s)	74, 80, 898, 1754, 3166
PpsI	GAGTC	5 cut(s)	74, 80, 898, 1754, 3166
PpuMI	RGGWCCY	1 cut(s)	2517
PscI	ACATGT	2 cut(s)	436, 546
PsiI	TTATAA	1 cut(s)	3216
Psp124BI	GAGCTC	2 cut(s)	30, 348
Psp5II	RGGWCCY	1 cut(s)	2517
Psp6I	CCWGG	5 cut(s)	108, 1191, 1788, 2071, 2594
PspFI	CCCAGC	1 cut(s)	2264
PspGI	CCWGG	5 cut(s)	108, 1191, 1788, 2071, 2594
PspN4I	GGNNCC	2 cut(s)	1041, 2965
PspPI	GGNCC	2 cut(s)	57, 2517
PspPPI	RGGWCCY	1 cut(s)	2517
PstI	CTGCAG	3 cut(s)	44, 316, 361
PstNI	CAGNNNCTG	3 cut(s)	401, 1154, 2369
PsuI	RGATCY	2 cut(s)	1039, 1219
PvuII	CAGCTG	3 cut(s)	1151, 1444, 2972
RsaI	GTAC	6 cut(s)	466, 640, 1820, 1895, 2017, 2939
RsaNI	GTAC	6 cut(s)	465, 639, 1819, 1894, 2016, 2938
RseI	CAYNNNNRTG	2 cut(s)	159, 441
SacI	GAGCTC	2 cut(s)	30, 348
SalI	GTCGAC	1 cut(s)	3053
SapI	GCTCTTC	1 cut(s)	2028
Sau3AI	GATC	9 cut(s)	469, 487, 1039, 1219, 1447, 2587, 2641, 3079, 3102
Sau96I	GGNCC	2 cut(s)	57, 2517
ScaI	AGTACT	2 cut(s)	1895, 2017
SchI	GAGTC	5 cut(s)	74, 81, 899, 1754, 3166
ScrFI	CCNGG	6 cut(s)	110, 1193, 1790, 2073, 2405, 2596
SduI	GDGCHC	2 cut(s)	30, 348
SfaNI	GCATC	7 cut(s)	253, 782, 1726, 1835, 2107, 2803, 2899
SfcI	CTRYAG	3 cut(s)	40, 312, 357
SfuI	TTCGAA	1 cut(s)	1521
SinI	GGWCC	2 cut(s)	57, 2517
SmiMI	CAYNNNNRTG	2 cut(s)	159, 441
SmlI	CTYRAG	4 cut(s)	781, 1460, 3039, 3128
SmoI	CTYRAG	4 cut(s)	781, 1460, 3039, 3128
SphI	GCATGC	2 cut(s)	299, 2627
SspI	AATATT	1 cut(s)	1648
SspMI	CTAG	7 cut(s)	332, 636, 1745, 1757, 1991, 2277, 2796
SstI	GAGCTC	2 cut(s)	30, 348
StyD4I	CCNGG	6 cut(s)	108, 1191, 1788, 2071, 2403, 2594
StyI	CCWWGG	6 cut(s)	60, 573, 1131, 1227, 2145, 2473
TaaI	ACNGT	6 cut(s)	506, 963, 1841, 2316, 3000, 3076
TaiI	ACGT	1 cut(s)	2619
TaqI	TCGA	9 cut(s)	24, 78, 195, 958, 1521, 1665, 2183, 3054, 3101
TaqII	GACCGA	1 cut(s)	2230
TatI	WGTACW	4 cut(s)	638, 1818, 1893, 2015
TauI	GCSGC	1 cut(s)	2383
TfiI	GAWTC	8 cut(s)	425, 509, 629, 761, 1877, 1961, 2232, 3098
TscAI	CASTG	4 cut(s)	511, 523, 1846, 2370
TseFI	GTSAC	3 cut(s)	884, 2002, 2399
Tsp45I	GTSAC	3 cut(s)	884, 2002, 2399
TspDTI	ATGAA	8 cut(s)	515, 737, 741, 774, 1002, 1284, 2558, 2820
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	4 cut(s)	511, 523, 1846, 2370
Van91I	CCANNNNNTGG	1 cut(s)	2151
Vha464I	CTTAAG	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	57, 2517
XapI	RAATTY	7 cut(s)	924, 1199, 1249, 1453, 1844, 2506, 2807
XceI	RCATGY	6 cut(s)	164, 299, 440, 550, 774, 2627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2255
XmiI	GTMKAC	3 cut(s)	1585, 2876, 3054
XmnI	GAANNNNTTC	1 cut(s)	1527
XspI	CTAG	7 cut(s)	332, 636, 1745, 1757, 1991, 2277, 2796
ZrmI	AGTACT	2 cut(s)	1895, 2017
Zsp2I	ATGCAT	2 cut(s)	301, 2625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.