Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Forward (+)

11121588 .. 11124736

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAGCAATCTCAGAGCGAGTCGAGCTCGCTAAGATTTGCAGCTCGCCCGACTGGTCCAAGGCAATCCTAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCAGGACATCTGCAACAAAGCCTTCTGTTACAGCCAATTGGAGTTGCACAAGCATGTGGTCAAGATTGTGATAGGGCGCTTCAGCTCGACCCCGCGCTGCTTCAAGCTTACATCCTCAAAGGATGAAAAGGTGGTTGCTTTTCAAGACATCAAAGCTGCTGCTATAAGATTGAAGCAAGGAAATGACCACTTGAAGGCTCAAATAGAATTTTTTGAGGGGATTTCTGGAACAGATGAGTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

117

Amino Acids

12.96

Weight (kDa)

7.68

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	202
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	5 cut(s)	105, 211, 251, 280, 301
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	28, 45, 192, 214, 263
AluI	AGCT	5 cut(s)	28, 45, 192, 214, 263
Alw21I	GWGCWC	1 cut(s)	30
ApeKI	GCWGC	5 cut(s)	5, 42, 204, 263, 266
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	186, 204
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	5 cut(s)	17, 54, 191, 250, 253
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	5 cut(s)	6, 43, 205, 264, 267
BlsI	GCNGC	5 cut(s)	7, 44, 206, 265, 268
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	59, 94
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	218, 235
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	59, 94
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	17, 54, 191, 250, 253
Bsh1236I	CGCG	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	59, 94
BssECI	CCNNGG	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	30, 47
BstDEI	CTNAG	2 cut(s)	13, 33
BstF5I	GGATG	2 cut(s)	218, 235
BstFNI	CGCG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	186, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	5 cut(s)	17, 54, 191, 250, 253
BtsCI	GGATG	2 cut(s)	218, 235
Cac8I	GCNNGC	2 cut(s)	30, 47
CfoI	GCGC	2 cut(s)	186, 204
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	8 cut(s)	28, 45, 128, 141, 192, 214, 263, 305
CviKI_1	RGCY	8 cut(s)	28, 45, 128, 141, 192, 214, 263, 305
DdeI	CTNAG	2 cut(s)	13, 33
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	164
FaiI	YATR	2 cut(s)	162, 272
FatI	CATG	1 cut(s)	160
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	6, 43, 205, 264, 267
FokI	GGATG	2 cut(s)	205, 242
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	6, 43, 205, 264, 267
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	2 cut(s)	185, 203
GluI	GCNGC	5 cut(s)	6, 43, 205, 264, 267
HaeII	RGCGCY	1 cut(s)	187
HhaI	GCGC	2 cut(s)	186, 204
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	2 cut(s)	184, 202
HinP1I	GCGC	2 cut(s)	184, 202
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	21, 80
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	169, 251, 333
HpyAV	CCTTC	2 cut(s)	139, 295
HpyCH4V	TGCA	3 cut(s)	42, 120, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	13, 33
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	2 cut(s)	184, 202
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	5 cut(s)	40, 95, 107, 122, 318
Lsp1109I	GCAGC	5 cut(s)	17, 54, 191, 250, 253
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	134
MboII	GAAGA	1 cut(s)	93
MfeI	CAATTG	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	143, 314
MlyI	GAGTC	2 cut(s)	30, 74
MnlI	CCTC	5 cut(s)	86, 98, 109, 232, 316
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	164
NspI	RCATGY	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	7, 44, 206, 265, 268
PleI	GAGTC	2 cut(s)	29, 74
PpsI	GAGTC	2 cut(s)	29, 74
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	5 cut(s)	6, 43, 205, 264, 267
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	30, 74
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 47, 194, 216, 240, 265
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	143, 314
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	3 cut(s)	24, 78, 194
TasI	AATT	2 cut(s)	143, 314
TseI	GCWGC	5 cut(s)	5, 42, 204, 263, 266
TspDTI	ATGAA	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.