Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006359

Physical Location & Seq

Genomic Coordinates Reverse (-)

71259622 .. 71261729

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG412800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCAGCAATCTCCGAGCGAGTCGAGCTCGCCAAGATCTGCAGCTCGTGCGACTGGTCCAAGGCAATCCGAGTCCTCGACTCGCTCCTCAACCAGTCCTCTTCAATCCAGGACATCTGCAACAGAACCTTCTGTTACAGCCAATTGGAGCTGCACAAGCATGTGGTCAAGGATTGTGATAGGGCGCTTCAGCTCGACCCCACGCTGCTTCAAGCTTACATCCTTAAAGGGCATATTATTGGATGGCACTACAATTGCAGGCAACTCTTTTCAAAATCAAAGCGAGGAAATCGCGAGTTTGTGAATGAAGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0032947 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045892 GO:0045934 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_7 TPR_8

Protein Analysis

105

Amino Acids

12.07

Weight (kDa)

8.58

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37460 AT4G37460
fragaria_vesca	FvH4_1g17100 FvH4_1g17100 FvH4_1g17100
malus_domestica	MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1
prunus_persica	Prupe.6G225100_v2.0.a1
pyrus_communis	pycom02g14710 pycom15g25540
rosa_chinensis	RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271
rosa_laevigata	RLG00000017566
rosa_roxburghii	Rroxscaffold_2G00136490 Rroxscaffold_5G00354870
rosa_rugosa	Rorug02G0141400 Rorug02G0141400
rosa_samantha	Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800
rosa_wichuraiana	Rw2G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	105, 212, 273
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	28, 45, 151, 193, 215
AluI	AGCT	5 cut(s)	28, 45, 151, 193, 215
Alw21I	GWGCWC	1 cut(s)	30
ApeKI	GCWGC	4 cut(s)	5, 42, 151, 205
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	17, 54, 138, 192
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	4 cut(s)	6, 43, 152, 206
BlsI	GCNGC	4 cut(s)	7, 44, 153, 207
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	59, 94
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	219, 248
BseNI	ACTGG	2 cut(s)	59, 94
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	17, 54, 138, 192
BsgI	GTGCAG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	36
Bsp68I	TCGCGA	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	59, 94
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	30, 260
BstF5I	GGATG	2 cut(s)	219, 248
BstFNI	CGCG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	17, 54, 138, 192
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	219, 248
BtuMI	TCGCGA	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	30, 260
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	2 cut(s)	161, 315
CviJI	RGCY	6 cut(s)	28, 45, 141, 151, 193, 215
CviKI_1	RGCY	6 cut(s)	28, 45, 141, 151, 193, 215
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	164, 318
FaiI	YATR	3 cut(s)	162, 234, 316
FatI	CATG	2 cut(s)	160, 314
Fnu4HI	GCNGC	4 cut(s)	6, 43, 152, 206
FokI	GGATG	2 cut(s)	206, 255
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	6, 43, 152, 206
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	6, 43, 152, 206
HaeII	RGCGCY	1 cut(s)	188
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	164, 318
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	3 cut(s)	21, 72, 80
Hpy188I	TCNGA	2 cut(s)	16, 71
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	42, 120, 154, 258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
Hsp92II	CATG	2 cut(s)	164, 318
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	90, 148
LpnPI	CCDG	5 cut(s)	40, 95, 107, 122, 244
Lsp1109I	GCAGC	4 cut(s)	17, 54, 138, 192
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	93
MfeI	CAATTG	2 cut(s)	143, 253
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	143, 253
MlyI	GAGTC	3 cut(s)	30, 74, 81
MnlI	CCTC	4 cut(s)	86, 98, 109, 278
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	143, 253
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	25, 48, 157
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	164, 318
NruI	TCGCGA	1 cut(s)	294
NspI	RCATGY	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	7, 44, 153, 207
PleI	GAGTC	3 cut(s)	29, 74, 80
PpsI	GAGTC	3 cut(s)	29, 74, 80
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	36
RruI	TCGCGA	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	4 cut(s)	6, 43, 152, 206
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	3 cut(s)	30, 74, 81
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 47, 131, 153, 195, 217
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	143, 253
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	3 cut(s)	24, 78, 195
TasI	AATT	2 cut(s)	143, 253
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	4 cut(s)	5, 42, 151, 205
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.