Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37460 AT4G37460 |
| fragaria_vesca | FvH4_1g17100 FvH4_1g17100 FvH4_1g17100 |
| malus_domestica | MD02G1181200.v1.1 MD15G1292200.v1.1 MD15G1292300.v1.1 |
| prunus_persica | Prupe.6G225100_v2.0.a1 |
| pyrus_communis | pycom02g14710 pycom15g25540 |
| rosa_chinensis | RchiOBHm_Chr1g0315291 RchiOBHm_Chr2g0107271 |
| rosa_laevigata | RLG00000017566 |
| rosa_roxburghii | Rroxscaffold_2G00136490 Rroxscaffold_5G00354870 |
| rosa_rugosa | Rorug02G0141400 Rorug02G0141400 |
| rosa_samantha | Rh2AG192200 Rh2BG204100 Rh2CG197500 Rh2DG199500 Rh3CG136000 Rh3DG316900 Rh4DG318400 Rh5AG412800 |
| rosa_wichuraiana | Rw2G015210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3222 |
| AbsI | CCTCGAGG | 1 cut(s) | 1472 |
| AccI | GTMKAC | 2 cut(s) | 1597, 2882 |
| AccII | CGCG | 3 cut(s) | 49, 51, 203 |
| AccIII | TCCGGA | 1 cut(s) | 3163 |
| AclI | AACGTT | 1 cut(s) | 3081 |
| AclWI | GGATC | 9 cut(s) | 477, 1046, 1059, 1467, 2408, 2964, 2977, 3080, 3181 |
| AcoI | YGGCCR | 1 cut(s) | 2341 |
| AcsI | RAATTY | 5 cut(s) | 1211, 1261, 1465, 2518, 2813 |
| AcuI | CTGAAG | 4 cut(s) | 173, 613, 798, 1526 |
| AfaI | GTAC | 8 cut(s) | 466, 1832, 1907, 2029, 2654, 2701, 2794, 2945 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1525, 2712, 2762, 3170 |
| AflII | CTTAAG | 1 cut(s) | 793 |
| AflIII | ACRYGT | 1 cut(s) | 436 |
| AjnI | CCWGG | 3 cut(s) | 108, 1800, 2083 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1289, 1321 |
| Alw21I | GWGCWC | 2 cut(s) | 30, 348 |
| Alw26I | GTCTC | 2 cut(s) | 2218, 2472 |
| AlwI | GGATC | 9 cut(s) | 477, 1046, 1059, 1467, 2408, 2964, 2977, 3080, 3181 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1166, 2381 |
| Ama87I | CYCGRG | 1 cut(s) | 1472 |
| Aor13HI | TCCGGA | 1 cut(s) | 3163 |
| AoxI | GGCC | 5 cut(s) | 576, 1140, 1221, 2341, 2590 |
| ApoI | RAATTY | 5 cut(s) | 1211, 1261, 1465, 2518, 2813 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 935, 967 |
| AspLEI | GCGC | 5 cut(s) | 51, 187, 205, 1438, 2645 |
| AspS9I | GGNCC | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 5 cut(s) | 575, 630, 1424, 2678, 2879 |
| AvaI | CYCGRG | 1 cut(s) | 1472 |
| AvaII | GGWCC | 1 cut(s) | 57 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 402, 435 |
| BamHI | GGATCC | 2 cut(s) | 1051, 2969 |
| BanII | GRGCYC | 2 cut(s) | 30, 348 |
| BauI | CACGAG | 1 cut(s) | 1194 |
| BbsI | GAAGAC | 2 cut(s) | 1338, 1532 |
| Bbv12I | GWGCWC | 2 cut(s) | 30, 348 |
| BbvCI | CCTCAGC | 2 cut(s) | 1167, 1428 |
| BccI | CCATC | 8 cut(s) | 605, 1165, 1556, 1606, 1871, 2582, 2799, 3136 |
| BceAI | ACGGC | 3 cut(s) | 1736, 1851, 2328 |
| BciT130I | CCWGG | 3 cut(s) | 110, 1802, 2085 |
| BclI | TGATCA | 1 cut(s) | 487 |
| BcoDI | GTCTC | 2 cut(s) | 2218, 2472 |
| BfaI | CTAG | 6 cut(s) | 332, 933, 1769, 2003, 2289, 2802 |
| BfmI | CTRYAG | 3 cut(s) | 40, 312, 320 |
| BfoI | RGCGCY | 1 cut(s) | 188 |
| BfrI | CTTAAG | 1 cut(s) | 793 |
| BglII | AGATCT | 1 cut(s) | 316 |
| BmcAI | AGTACT | 3 cut(s) | 1907, 2029, 2701 |
| Bme1390I | CCNGG | 3 cut(s) | 110, 1802, 2085 |
| Bme18I | GGWCC | 1 cut(s) | 57 |
| BmeT110I | CYCGRG | 1 cut(s) | 1472 |
| BmgT120I | GGNCC | 1 cut(s) | 57 |
| BmiI | GGNNCC | 2 cut(s) | 1053, 2971 |
| BmrFI | CCNGG | 3 cut(s) | 110, 1802, 2085 |
| BmrI | ACTGGG | 3 cut(s) | 1489, 1659, 3073 |
| BmuI | ACTGGG | 3 cut(s) | 1489, 1659, 3073 |
| BpiI | GAAGAC | 2 cut(s) | 1338, 1532 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 12, 44, 2017, 2049 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1167, 1428 |
| BpuEI | CTTGAG | 3 cut(s) | 1759, 3030, 3119 |
| BsaAI | YACGTR | 1 cut(s) | 896 |
| BsaI | GGTCTC | 2 cut(s) | 2218, 2472 |
| BsaJI | CCNNGG | 7 cut(s) | 60, 1143, 1204, 1218, 2083, 2228, 2485 |
| BsaWI | WCCGGW | 1 cut(s) | 3163 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 272, 302, 1895, 1925 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1525, 2712, 2762, 3170 |
| Bse118I | RCCGGY | 1 cut(s) | 1953 |
| Bse1I | ACTGG | 8 cut(s) | 59, 94, 1495, 1654, 1913, 2344, 2945, 3068 |
| Bse3DI | GCAATG | 6 cut(s) | 299, 565, 691, 1802, 2838, 2860 |
| BseAI | TCCGGA | 1 cut(s) | 3163 |
| BseBI | CCWGG | 3 cut(s) | 110, 1802, 2085 |
| BseDI | CCNNGG | 7 cut(s) | 60, 1143, 1204, 1218, 2083, 2228, 2485 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1525, 2712, 2762, 3170 |
| BseMI | GCAATG | 6 cut(s) | 299, 565, 691, 1802, 2838, 2860 |
| BseMII | CTCAG | 5 cut(s) | 516, 642, 1158, 1419, 2313 |
| BseNI | ACTGG | 8 cut(s) | 59, 94, 1495, 1654, 1913, 2344, 2945, 3068 |
| BseRI | GAGGAG | 4 cut(s) | 77, 1445, 2245, 2287 |
| BseYI | CCCAGC | 1 cut(s) | 2276 |
| BsgI | GTGCAG | 2 cut(s) | 137, 1505 |
| Bsh1236I | CGCG | 3 cut(s) | 49, 51, 203 |
| BshFI | GGCC | 5 cut(s) | 578, 1142, 1223, 2343, 2592 |
| BsiHKAI | GWGCWC | 2 cut(s) | 30, 348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1472 |
| BsiSI | CCGG | 3 cut(s) | 1954, 2756, 3164 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1525, 2712, 2762, 3170 |
| BsmAI | GTCTC | 2 cut(s) | 2218, 2472 |
| BsnI | GGCC | 5 cut(s) | 578, 1142, 1223, 2343, 2592 |
| Bso31I | GGTCTC | 2 cut(s) | 2218, 2472 |
| BsoBI | CYCGRG | 1 cut(s) | 1472 |
| Bsp1286I | GDGCHC | 2 cut(s) | 30, 348 |
| Bsp13I | TCCGGA | 1 cut(s) | 3163 |
| Bsp1407I | TGTACA | 2 cut(s) | 1830, 2792 |
| Bsp19I | CCATGG | 1 cut(s) | 1143 |
| BspANI | GGCC | 5 cut(s) | 578, 1142, 1223, 2343, 2592 |
| BspCNI | CTCAG | 5 cut(s) | 517, 643, 1159, 1420, 2312 |
| BspEI | TCCGGA | 1 cut(s) | 3163 |
| BspFNI | CGCG | 3 cut(s) | 49, 51, 203 |
| BspHI | TCATGA | 3 cut(s) | 745, 1279, 2553 |
| BspLI | GGNNCC | 2 cut(s) | 1053, 2971 |
| BspMAI | CTGCAG | 3 cut(s) | 44, 316, 324 |
| BspPI | GGATC | 9 cut(s) | 477, 1046, 1059, 1467, 2408, 2964, 2977, 3080, 3181 |
| BspQI | GCTCTTC | 2 cut(s) | 1979, 2040 |
| BspTI | CTTAAG | 1 cut(s) | 793 |
| BspTNI | GGTCTC | 2 cut(s) | 2218, 2472 |
| BsrDI | GCAATG | 6 cut(s) | 299, 565, 691, 1802, 2838, 2860 |
| BsrFI | RCCGGY | 1 cut(s) | 1953 |
| BsrGI | TGTACA | 2 cut(s) | 1830, 2792 |
| BsrI | ACTGG | 8 cut(s) | 59, 94, 1495, 1654, 1913, 2344, 2945, 3068 |
| BssAI | RCCGGY | 1 cut(s) | 1953 |
| BssECI | CCNNGG | 7 cut(s) | 60, 1143, 1204, 1218, 2083, 2228, 2485 |
| BssSI | CACGAG | 1 cut(s) | 1194 |
| BssT1I | CCWWGG | 4 cut(s) | 60, 1143, 1204, 2485 |
| Bst2BI | CACGAG | 1 cut(s) | 1194 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 1802, 2085 |
| Bst4CI | ACNGT | 3 cut(s) | 506, 975, 1853 |
| Bst6I | CTCTTC | 6 cut(s) | 106, 1075, 1979, 2040, 2439, 3186 |
| BstAFI | CTTAAG | 1 cut(s) | 793 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 242, 301, 328, 1199 |
| BstAUI | TGTACA | 2 cut(s) | 1830, 2792 |
| BstBAI | YACGTR | 1 cut(s) | 896 |
| BstDEI | CTNAG | 7 cut(s) | 525, 651, 1167, 1428, 2299, 2438, 3212 |
| BstDSI | CCRYGG | 1 cut(s) | 1143 |
| BstFNI | CGCG | 3 cut(s) | 49, 51, 203 |
| BstH2I | RGCGCY | 1 cut(s) | 188 |
| BstHHI | GCGC | 5 cut(s) | 51, 187, 205, 1438, 2645 |
| BstMAI | GTCTC | 2 cut(s) | 2218, 2472 |
| BstNI | CCWGG | 3 cut(s) | 110, 1802, 2085 |
| BstNSI | RCATGY | 5 cut(s) | 164, 299, 440, 786, 2633 |
| BstSCI | CCNGG | 3 cut(s) | 108, 1800, 2083 |
| BstSFI | CTRYAG | 3 cut(s) | 40, 312, 320 |
| BstUI | CGCG | 3 cut(s) | 49, 51, 203 |
| BstV2I | GAAGAC | 2 cut(s) | 1338, 1532 |
| BstX2I | RGATCY | 3 cut(s) | 316, 1051, 2969 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 611 |
| BstYI | RGATCY | 3 cut(s) | 316, 1051, 2969 |
| BsuRI | GGCC | 5 cut(s) | 578, 1142, 1223, 2343, 2592 |
| BtgI | CCRYGG | 1 cut(s) | 1143 |
| BtsIMutI | CAGTG | 4 cut(s) | 511, 637, 1858, 2382 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1166, 2381 |
| CciI | TCATGA | 3 cut(s) | 745, 1279, 2553 |
| CfoI | GCGC | 5 cut(s) | 51, 187, 205, 1438, 2645 |
| Cfr10I | RCCGGY | 1 cut(s) | 1953 |
| Cfr13I | GGNCC | 1 cut(s) | 57 |
| CseI | GACGC | 1 cut(s) | 293 |
| Csp6I | GTAC | 8 cut(s) | 465, 1831, 1906, 2028, 2653, 2700, 2793, 2944 |
| CviQI | GTAC | 8 cut(s) | 465, 1831, 1906, 2028, 2653, 2700, 2793, 2944 |
| DdeI | CTNAG | 7 cut(s) | 525, 651, 1167, 1428, 2299, 2438, 3212 |
| DraI | TTTAAA | 2 cut(s) | 1443, 1980 |
| EaeI | YGGCCR | 1 cut(s) | 2341 |
| Eam1104I | CTCTTC | 6 cut(s) | 106, 1075, 1979, 2040, 2439, 3186 |
| EarI | CTCTTC | 6 cut(s) | 106, 1075, 1979, 2040, 2439, 3186 |
| Ecl136II | GAGCTC | 2 cut(s) | 28, 346 |
| Eco130I | CCWWGG | 4 cut(s) | 60, 1143, 1204, 2485 |
| Eco24I | GRGCYC | 2 cut(s) | 30, 348 |
| Eco31I | GGTCTC | 2 cut(s) | 2218, 2472 |
| Eco32I | GATATC | 1 cut(s) | 450 |
| Eco47I | GGWCC | 1 cut(s) | 57 |
| Eco53kI | GAGCTC | 2 cut(s) | 28, 346 |
| Eco57I | CTGAAG | 4 cut(s) | 173, 613, 798, 1526 |
| Eco88I | CYCGRG | 1 cut(s) | 1472 |
| EcoICRI | GAGCTC | 2 cut(s) | 28, 346 |
| EcoRII | CCWGG | 3 cut(s) | 108, 1800, 2083 |
| EcoRV | GATATC | 1 cut(s) | 450 |
| EcoT14I | CCWWGG | 4 cut(s) | 60, 1143, 1204, 2485 |
| EcoT22I | ATGCAT | 2 cut(s) | 301, 2631 |
| EcoT38I | GRGCYC | 2 cut(s) | 30, 348 |
| ErhI | CCWWGG | 4 cut(s) | 60, 1143, 1204, 2485 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 445, 477, 911, 943 |
| FauI | CCCGC | 2 cut(s) | 208, 1686 |
| FauNDI | CATATG | 3 cut(s) | 554, 1093, 2314 |
| FbaI | TGATCA | 1 cut(s) | 487 |
| FblI | GTMKAC | 2 cut(s) | 1597, 2882 |
| FriOI | GRGCYC | 2 cut(s) | 30, 348 |
| FspBI | CTAG | 6 cut(s) | 332, 933, 1769, 2003, 2289, 2802 |
| GlaI | GCGC | 5 cut(s) | 50, 186, 204, 1437, 2644 |
| GsaI | CCCAGC | 1 cut(s) | 2280 |
| HaeII | RGCGCY | 1 cut(s) | 188 |
| HaeIII | GGCC | 5 cut(s) | 578, 1142, 1223, 2343, 2592 |
| HapII | CCGG | 3 cut(s) | 1954, 2756, 3164 |
| HgaI | GACGC | 1 cut(s) | 293 |
| HhaI | GCGC | 5 cut(s) | 51, 187, 205, 1438, 2645 |
| Hin6I | GCGC | 5 cut(s) | 49, 185, 203, 1436, 2643 |
| HinP1I | GCGC | 5 cut(s) | 49, 185, 203, 1436, 2643 |
| HincII | GTYRAC | 2 cut(s) | 997, 1647 |
| HindII | GTYRAC | 2 cut(s) | 997, 1647 |
| HindIII | AAGCTT | 3 cut(s) | 213, 593, 1991 |
| HpaI | GTTAAC | 1 cut(s) | 997 |
| HpaII | CCGG | 3 cut(s) | 1954, 2756, 3164 |
| HphI | GGTGA | 5 cut(s) | 575, 630, 1424, 2678, 2879 |
| HpyAV | CCTTC | 9 cut(s) | 139, 246, 995, 1234, 2143, 2229, 2551, 2720, 2808 |
| HpyCH4III | ACNGT | 3 cut(s) | 506, 975, 1853 |
| HpyCH4IV | ACGT | 2 cut(s) | 895, 3081 |
| HpyF3I | CTNAG | 7 cut(s) | 525, 651, 1167, 1428, 2299, 2438, 3212 |
| HpySE526I | ACGT | 2 cut(s) | 895, 3081 |
| HspAI | GCGC | 5 cut(s) | 49, 185, 203, 1436, 2643 |
| Kpn2I | TCCGGA | 1 cut(s) | 3163 |
| Ksp22I | TGATCA | 1 cut(s) | 487 |
| KspAI | GTTAAC | 1 cut(s) | 997 |
| LguI | GCTCTTC | 2 cut(s) | 1979, 2040 |
| LmnI | GCTCC | 5 cut(s) | 90, 148, 280, 2758, 3035 |
| MaeI | CTAG | 6 cut(s) | 332, 933, 1769, 2003, 2289, 2802 |
| MaeII | ACGT | 2 cut(s) | 895, 3081 |
| MaeIII | GTNAC | 4 cut(s) | 134, 391, 2014, 3139 |
| MfeI | CAATTG | 3 cut(s) | 143, 326, 354 |
| MflI | RGATCY | 3 cut(s) | 316, 1051, 2969 |
| MhlI | GDGCHC | 2 cut(s) | 30, 348 |
| MlyI | GAGTC | 8 cut(s) | 30, 74, 81, 767, 911, 1766, 2297, 3172 |
| MmeI | TCCRAC | 1 cut(s) | 1126 |
| Mph1103I | ATGCAT | 2 cut(s) | 301, 2631 |
| MroI | TCCGGA | 1 cut(s) | 3163 |
| MslI | CAYNNNNRTG | 2 cut(s) | 159, 441 |
| MspA1I | CMGCKG | 4 cut(s) | 1163, 1456, 1733, 2978 |
| MspCI | CTTAAG | 1 cut(s) | 793 |
| MspI | CCGG | 3 cut(s) | 1954, 2756, 3164 |
| MspR9I | CCNGG | 3 cut(s) | 110, 1802, 2085 |
| MunI | CAATTG | 3 cut(s) | 143, 326, 354 |
| MvaI | CCWGG | 3 cut(s) | 110, 1802, 2085 |
| MvnI | CGCG | 3 cut(s) | 49, 51, 203 |
| NcoI | CCATGG | 1 cut(s) | 1143 |
| NdeI | CATATG | 3 cut(s) | 554, 1093, 2314 |
| NlaIV | GGNNCC | 2 cut(s) | 1053, 2971 |
| NmuCI | GTSAC | 1 cut(s) | 2014 |
| NsiI | ATGCAT | 2 cut(s) | 301, 2631 |
| NspI | RCATGY | 5 cut(s) | 164, 299, 440, 786, 2633 |
| PaeI | GCATGC | 2 cut(s) | 299, 2633 |
| PaeR7I | CTCGAG | 1 cut(s) | 1472 |
| PagI | TCATGA | 3 cut(s) | 745, 1279, 2553 |
| PciI | ACATGT | 1 cut(s) | 436 |
| PciSI | GCTCTTC | 2 cut(s) | 1979, 2040 |
| PfeI | GAWTC | 7 cut(s) | 425, 509, 635, 1889, 1973, 2244, 3104 |
| PflFI | GACNNNGTC | 1 cut(s) | 949 |
| PfoI | TCCNGGA | 1 cut(s) | 108 |
| PleI | GAGTC | 8 cut(s) | 29, 74, 80, 767, 910, 1766, 2297, 3172 |
| PpsI | GAGTC | 8 cut(s) | 29, 74, 80, 767, 910, 1766, 2297, 3172 |
| Ppu21I | YACGTR | 1 cut(s) | 896 |
| PscI | ACATGT | 1 cut(s) | 436 |
| PsiI | TTATAA | 1 cut(s) | 3222 |
| Psp124BI | GAGCTC | 2 cut(s) | 30, 348 |
| Psp1406I | AACGTT | 1 cut(s) | 3081 |
| Psp6I | CCWGG | 3 cut(s) | 108, 1800, 2083 |
| PspFI | CCCAGC | 1 cut(s) | 2276 |
| PspGI | CCWGG | 3 cut(s) | 108, 1800, 2083 |
| PspN4I | GGNNCC | 2 cut(s) | 1053, 2971 |
| PspPI | GGNCC | 1 cut(s) | 57 |
| PspXI | VCTCGAGB | 1 cut(s) | 1472 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2722, 2754, 2776, 2808 |
| PstI | CTGCAG | 3 cut(s) | 44, 316, 324 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1166, 2381 |
| PsuI | RGATCY | 3 cut(s) | 316, 1051, 2969 |
| PsyI | GACNNNGTC | 1 cut(s) | 949 |
| PvuII | CAGCTG | 3 cut(s) | 1163, 1456, 2978 |
| RsaI | GTAC | 8 cut(s) | 466, 1832, 1907, 2029, 2654, 2701, 2794, 2945 |
| RsaNI | GTAC | 8 cut(s) | 465, 1831, 1906, 2028, 2653, 2700, 2793, 2944 |
| RseI | CAYNNNNRTG | 2 cut(s) | 159, 441 |
| SacI | GAGCTC | 2 cut(s) | 30, 348 |
| SapI | GCTCTTC | 2 cut(s) | 1979, 2040 |
| Sau96I | GGNCC | 1 cut(s) | 57 |
| ScaI | AGTACT | 3 cut(s) | 1907, 2029, 2701 |
| SchI | GAGTC | 8 cut(s) | 30, 74, 81, 767, 911, 1766, 2297, 3172 |
| ScrFI | CCNGG | 3 cut(s) | 110, 1802, 2085 |
| SduI | GDGCHC | 2 cut(s) | 30, 348 |
| SfcI | CTRYAG | 3 cut(s) | 40, 312, 320 |
| Sfr274I | CTCGAG | 1 cut(s) | 1472 |
| SinI | GGWCC | 1 cut(s) | 57 |
| SlaI | CTCGAG | 1 cut(s) | 1472 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 159, 441 |
| SmlI | CTYRAG | 5 cut(s) | 793, 1472, 1774, 3045, 3134 |
| SmoI | CTYRAG | 5 cut(s) | 793, 1472, 1774, 3045, 3134 |
| SphI | GCATGC | 2 cut(s) | 299, 2633 |
| SspI | AATATT | 1 cut(s) | 1675 |
| SspMI | CTAG | 6 cut(s) | 332, 933, 1769, 2003, 2289, 2802 |
| SstI | GAGCTC | 2 cut(s) | 30, 348 |
| StyD4I | CCNGG | 3 cut(s) | 108, 1800, 2083 |
| StyI | CCWWGG | 4 cut(s) | 60, 1143, 1204, 2485 |
| TaaI | ACNGT | 3 cut(s) | 506, 975, 1853 |
| TaiI | ACGT | 2 cut(s) | 898, 3084 |
| TaqII | GACCGA | 1 cut(s) | 2242 |
| TatI | WGTACW | 5 cut(s) | 1830, 1905, 2027, 2699, 2792 |
| TauI | GCSGC | 1 cut(s) | 2395 |
| TfiI | GAWTC | 7 cut(s) | 425, 509, 635, 1889, 1973, 2244, 3104 |
| TscAI | CASTG | 4 cut(s) | 511, 637, 1858, 2382 |
| TseFI | GTSAC | 1 cut(s) | 2014 |
| Tsp45I | GTSAC | 1 cut(s) | 2014 |
| TspDTI | ATGAA | 8 cut(s) | 521, 749, 753, 1268, 1296, 2301, 2570, 2826 |
| TspGWI | ACGGA | 2 cut(s) | 482, 1195 |
| TspRI | CASTG | 4 cut(s) | 511, 637, 1858, 2382 |
| Tth111I | GACNNNGTC | 1 cut(s) | 949 |
| Vha464I | CTTAAG | 1 cut(s) | 793 |
| VpaK11BI | GGWCC | 1 cut(s) | 57 |
| XapI | RAATTY | 5 cut(s) | 1211, 1261, 1465, 2518, 2813 |
| XbaI | TCTAGA | 1 cut(s) | 2801 |
| XceI | RCATGY | 5 cut(s) | 164, 299, 440, 786, 2633 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2267 |
| XhoI | CTCGAG | 1 cut(s) | 1472 |
| XmiI | GTMKAC | 2 cut(s) | 1597, 2882 |
| XspI | CTAG | 6 cut(s) | 332, 933, 1769, 2003, 2289, 2802 |
| ZrmI | AGTACT | 3 cut(s) | 1907, 2029, 2701 |
| Zsp2I | ATGCAT | 2 cut(s) | 301, 2631 |